Braincase evolution in suchian archosaurs (Reptilia: Diapsida): evidence from the rauisuchian Batrachotomus kupferzellensis

The osteology of an almost complete braincase of the rauisuchian archosaur Batrachotomus kupferzellensis Gower from the Middle Triassic of Germany is described. There is a possibly discrete epiotic ossification, the metotic fissure is undivided by bone (i.e. there is a metotic foramen), the medial wall of the otic capsule is mostly ossified, the cerebral branch of the internal carotid artery entered the lateral surface of the parabasisphenoid, the ventral ramus of the opisthotic is more prominent laterally than a strong subvertical ridge on the exoccipital and basioccipital that lies posterior to the external foramen for the hypoglossal nerve, and the perilymphatic foramen faces away from the otic capsule in a posterior direction. Braincase morphology in the rauisuchians Saurosuchus galilei , Postosuchus kirkpatricki, and Tikisuchus romeri is reviewed. A matrix of 27 braincase characters for 12 archosaurian taxa is analysed. The most parsimonious hypothesis is consistent with the currently orthodox view of archosaurian phylogeny, except in that aetosaurians are more closely related to crocodylomorphs than is any rauisuchian. This phylogeny is used in a brief interpretation of the evolution of derived braincase features present in extant crocodilians. © 2002 The Linnean Society of London, Zoological Journal of the Linnean Society , 2002, 136 , 49–76.     

Phylogenetic implications of the morphology of the braincase of caecilian amphibians (Gymnophiona)

Caecilian morphology is strongly modified in association with their fossorial mode of life. Currently phylogenetic analyses of characters drawn from the morphology of caecilians lack resolution, as well as complementarity, with results of phylogenetic analyses that employ molecular data. Stemming from the hypothesis derived from the mammal literature that the braincase has the greatest potential (in comparison to other cranial units) to yield phylogenetic information, the braincase and intimately associated stapes of 27 species (23 genera) of extant caecilians were examined using images assembled via microcomputed tomography. Thirty‐four new morphological characters pertaining to the braincase and stapes were identified and tested for congruence with previously recognized morphological characters. The results reveal that when added to previous character matrices, characters of the braincase and stapes resolve generic‐level relationships in a way that is largely congruent with the results of molecular analyses. Analysis of a combined data set of molecular and morphological data provides a framework for conducting ancestral character state reconstructions, which resulted in the identification of 95 new synapomorphies for various clades and taxa, 27 of which appear to be unique for the taxa that possess them. Together these data demonstrate the utility of the application of characters of the braincase and stapes for resolving phylogenetic relationships for a group whose morphology is largely confounded by functional modifications. In addition this study provides evidence of the utility of the braincase in resolving problematic morphology‐based phylogeny outside of Amniota, in an amphibian group. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 160–201.     

The braincase and middle ear region of Dendrerpeton acadianum (Tetrapoda: Temnospondyli)

Dendrerpeton acadianum from the Westphalian A (Upper Carboniferous) of Joggins, Nova Scotia, is a phylogenetically and chronologically early temnospondyl. Its external cranial anatomy has been used previously to suggest the presence of a tympanic membrane, and thus of an ear adapted to the perception of airborne sound. However, supporting evidence provided by stapedial and braincase morphology has so far been lacking. The braincase and middle ear region have remained almost wholly unknown. CT scanning and 3-D computer reconstruction of BMNH R.436 have been used to shed light on these important areas. Both stapes prove to be present in the specimen; the right stapes is distorted, but the left stapes lies inside the cranial cavity and is perfectly preserved. The latter resembles the stapes of the relatively few other temnospondyls in which the bone has been described and is most similar to that of Doleserpeton . The morphology and orientation of the stapes provide strong evidence for the presence of an ear adapted to the perception of airborne sound, with similarities to the extant anuran condition. The reconstructed braincase shows a high degree of similarity to that of other adequately known temnospondyls. This gives supporting evidence that D. acadianum is correctly placed in the temnospondyl phylogeny and thus demonstrates one of the earliest hearing systems adapted to the perception of airborne sound that can be homologized with the extant anuran condition.  © 2005 The Trustees of the Natural History Museum, Zoological Journal of the Linnean Society , 2005, 143 , 577−597.     

Disparity and geometry of the skull in Archosauria (Reptilia: Diapsida)

A metric comparison of 155 fossil and extant species in lateral view based on the proportions of three homologous units (braincase, orbit and rostrum) reveals the existence of an archosaurian skull geometry. An empirical morphospace depicting skull proportions shows that the most variable unit is the rostrum. Three skull types based on rostral proportion are proposed: meso-, longi- and brevirostral. These types depend, on one hand, on a direct numerical relationship between the braincase and the orbit, with a mean ratio of 1:1; never surpassing a 2:1 or 1:2 ratio limit. On the other hand, skull types show a significant negative correlation between braincase and rostrum proportions. Close relationships have been obtained between orbit and the rostrum, although with lower significance and a geometric meaning specific to each group. Skull types depend mainly on the proportional relationship between the rostrum and the braincase. Mesorostral types account for more natural occurrences within morphospace, implying a plesiomorphic condition in Archosauria. Skulls with highest longirostral values (flying forms) display a more restrictive braincase–orbit ratio relationship. Brevirostrals are limited to the smallest skull lengths, up to approximately 180 mm. 85% of brevirostral modern birds have altricial post-hatchling development. General allometric pattern is very similar for all sampled archosaurs, although giant taxa (i.e. non-avian theropods) display a different type of skull proportional growth, closer to isometry. Results reveal the existence of a constructional skull geometry, highlighting the importance of the deviance of the structural design from adaptive explanations on craniofacial morphology in macroevolution.  © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 80, 67–88.     

A review of the platanaceous woods from the Eocene paratropical rainforest of south-east England

Small diameter pyritized axes, commonly referred to as 'twigs', of fossil platanaceous wood are described from the Lower Eocene London Clay Formation of south-east England. These twigs are characterized by solitary vessels with scalariform perforation plates, opposite intervessel pits, and tall, multiseriate rays that dilate in the phloem region. The wood anatomy supports close relationship to members of extant Platanaceae and the material is placed in the organ genus Plataninium Unger erected for fossil woods with close anatomical similarity to Platanus L. This material supplements the fossil record of platanaceous type wood from the Eocene London Clay and documents the first record of Plataninium decipiens Brett in the twig flora.  © 2002 The Linnean Society of London, Botanical Journal of the Linnean Society , 2002, 139 , 181–191.     

A phylogeny of the families of fossil and extant tetraodontiform fishes (Acanthomorpha, Tetraodontiformes), Upper Cretaceous to Recent

A data matrix is presented of 210 morphological characters (mostly osteological, some external) for 20 extant taxa of the ten Recent families of tetraodontiform fishes and 36 fossil tetraodontiforms. The oldest of these are from the Upper Cretaceous (95 Mya); most are from the Lower to Middle Eocene (50–58 Mya). There are two outgroup taxa (a zeiform and a caproid). A cladistic analysis of this matrix for only the extant taxa produced two equally parsimonious trees that call into question the monophyly of some of the previously accepted major higher-level tetraodontiform clades. Inclusion in the analysis of the large number of available fossil taxa helps to resolve relationships between family level clades. The new phylogenetic hypothesis, together with stratigraphic and biogeographical data, is used to discuss scenarios of the origin and evolution of the major clades of the order.  © 2003 The Linnean Society of London, Zoological Journal of the Linnean Society , 2003, 139 , 565−617.     

Functional morphology of neck musculature in the Tyrannosauridae (Dinosauria, Theropoda) as determined via a hierarchical inferential approach

With multiple well-preserved specimens, tyrannosaurid dinosaurs are ideal subjects for exploring the role of the neck for feeding in an extinct amniote clade. Detailed exploration of the morphology of avian and crocodilian neck muscles grounds phylogenetic inference of musculature of tyrannosaurids. Introduced methods of kinematic and physiological inference explicate action and function of tyrannosaurid neck muscles, and the explicit method of extant behavioural interpolation (EBI) allows inference of generalized behaviours. Anteriorly originating craniocervical muscles of tyrannosaurids, and insertions of the neck dorsiflexor m. transversospinalis cervicis, were similar to those of birds, while the major respective head dorsiflexor and lateroflexor, m. transversospinalis capitis and m. longissimus capitis superficialis, resembled their homologues in crocodilians. Because the proposed inferential methods are cumulative and emphasize mutual falsification, behavioural effects of muscle function become immediately testable rather than assumed. Kinematic inference of muscle moment topology, and bracketed and unipolar inference of muscle activity, facilitate EBI of rapid gaze shifts, lateral and sagittal strikes, inertial feeding, and tearing of flesh by specific permutational actions of tyrannosaurid neck muscles. Several examples of EBI are tested further through biomechanical considerations.  © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society , 2007, 151 , 759–808.     

Body size in proboscideans, with notes on elephant metabolism

Mass estimates for a number of fossil proboscideans were computed using regression analyses on appendicular bones to body mass, for seven specimens of modern elephants, for which body masses had been recorded prior to death. The marked differences in physical proportions between extant Loxodonta and Elephas , implying substantial differences in body mass at any given shoulder height, were not present in their long bone parameters. Length and least circumferences proved to be the best parameters for prediction of body mass. Some extinct proboscideans, notably certain Mammuthus and Deinotherium , were much larger than extant elephants. Both the basal and the field metabolic rates of extant elephants are lower than predicted for a hypothetical mammal, in accordance with their body size and subsistence on low-quality foods. The feeding quantities often ascribed to extant wild elephants are exaggerated, and would in fact have sufficed to nourish much larger species.  © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society , 2004, 140 , 523–549.     

Hymenaea mexicana sp. nov. (Leguminosae: Caesalpinioideae) from Mexican amber indicates Old World connections

Hymenaea mexicana sp. nov. is described in amber originating from mines of Chiapas, Mexico. The species is characterized by clawed showy petals with cordate bases and glabrous, verrucose ovaries with long hirsute hairs at their bases and margins on one side. This species is closely related to the extinct Hymenaea protera from Dominican amber, and together with it, is placed in the primitive section Trachylobium of the genus Hymenaea in the caesalpinoid legumes. The closest extant species to H. mexicana is H. verrucosa , a relict surviving in East Africa. These results challenge previous views that Mexican amber was produced by the South American species H. courbaril – H. intermedia , which belong to the advanced section of the genus.  © 2002 The Linnean Society of London, Botanical Journal of the Linnean Society , 2002, 139 , 125–132.     

THE BRAINCASE and JAWS OF CLADODUS FROM THE LOWER CARBONIFEROUS OF SCOTLAND

Abstract:  The jaws and an allegedly associated orbitotemporal region of a shark braincase are described from the Lower Carboniferous (Upper Viséan, Brigantian Stage, Clackmannan Group, Lower Limestone Formation) of Lugton, Ayrshire, Scotland. The braincase specimen is important because it is associated with a tooth of Cladodus elegans Newberry and Worthen, 1870, a form considered to be close to the type species Cladodus mirabilis Agassiz, 1843. An occipital fragment, a basicranium and a fragment of palatoquadrate from the same locality are also described. All the material probably represents the same species, and it is even possible that some of the material came from a single individual. The braincase resembles those of Cladodoide s and Tamiobatis , especially in the proportions of its otic region, the presence of an extensive dorsum sellae, and the arrangement of canals for major nerves and blood vessels. The internal structure of the occipital region is remarkably like that found in Tamiobatis braincases in having a prominent subnotochordal septum and paired subnotochordal and paroccipital chambers. Cladodus is no longer regarded as a nomen dubium , since only a few species founded on isolated teeth are now retained in the re-diagnosed genus, and one of these ( C. elegans ) is now associated with skeletal remains. The best systematic placement for Cladodus sensu stricto is among the Ctenacanthiformes or even the Ctenacanthidae. Cladodus may be a synonym of Ctenacanthus , but this cannot be confirmed with the available material.     

AN ALMOST COMPLETE JUVENILE SPECIMEN OF THE CHELONIID TURTLE CTENOCHELYS STENOPORUS (HAY, 1905) FROM THE UPPER CRETACEOUS NIOBRARA FORMATION OF KANSAS,USA

Abstract: A new, unusually well‐preserved juvenile specimen of Ctenochelys stenoporus from the Niobrara Formation is described. The skull has come apart at its sutures and all bones of the braincase and ear region are preserved three‐dimensionally. This allows a detailed reconstruction of the important brain structures of a basal juvenile cheloniid turtle. It is compared with adult Ctenochelys specimens, and the major ontogenetic changes in the skull and postcranial skeleton are described. Furthermore, the specimen is compared with other fossil and extant cheloniids with well‐known braincases and the differences between basal and advanced cheloniids turtles are specified.     

An integrative phylogenetic and extrapolatory approach to the reconstruction of dromaeosaur (Theropoda: Eumaniraptora) shoulder musculature

Dromaeosauridae is the sister taxon of the Avialae; thus, an investigation of dromaeosaur shoulder girdle musculature and forelimb function provides substantial information regarding changes in the size and performance of the theropod shoulder girdle musculature leading to avian powered flight. Twenty-two shoulder girdle muscles were reconstructed for the dromaeosaurid shoulder apparatus, based on phylogenetic inference, which involves the comparison of lepidosaurian, crocodilian and avian musculature, and extrapolatory inference, which involves a secondary comparison with functional analogues of theropods. In addition to these comparative methodologies, osteological correlates of shoulder musculature preserved in eumaniraptorans are identified, and comparisons with those of extant archosaurs allow these muscles to be definitively inferred in dromaeosaurids. This muscle reconstruction provides a foundation for subsequent investigation of differences in muscular attachment and function, based on scapulocoracoid morphology, across the theropod lineage leading to birds.  © 2006 The Linnean Society of London, Zoological Journal of the Linnean Society , 2006, 146 , 301–344.     

Revisiting the contribution of larval characters to an analysis of phylogenetic relationships of basal anurans

The higher-level relationships of anurans have been explored by numerous studies, producing a variety of hypotheses. The relationships of the basal anurans ('archaeobatrachians') are, however, poorly known . In part, this may be because the adult morphology of basal anurans is derived and therefore may not provide suitable phylogenetic signal. Recently, several authors have shown the phylogenetic utility of information derived from anuran larvae. In this paper we conduct separate and combined analyses of anuran relationships based on adult and larval morphology. Our combined results suggest that anurans form two major clades − the pipoids and all other frogs. Evidence also suggests that, taken together, Neobatrachia and Pelobatoidea form a monophyletic group. We discuss support for various groupings as shown by the different data sets. We also comment on the consequences of our phylogenetic hypothesis for the interpretation of reduction of vertebral elements and evolution of Orton's tadpole types in anurans.  © 2003 The Linnean Society of London, Zoological Journal of the Linnean Society, 2003, 139 , 129−155.     

Comparative morphology of the dermal palate in squamate reptiles, with comments on phylogenetic implications

The differentiation of the dermal palate and of the septomaxilla in extant squamate reptiles is reviewed in terms of Lakjer's distinctions of a palaeochoanate, incomplete neochoanate, and neochoanate condition. The differentiation of the bones surrounding the mushroom body, Jacobson's organ, and the internal naris (choana) supports a number of clades including Squamata, Scleroglossa, and Autarchoglossa, with Serpentes nested within Autarchoglossa. Dermal palate morphology and the differentiation of the septomaxilla in squamates reflect the evolution of the chemosensory system in general, and the vomeronasal system in particular, and strongly contradict a recent hypothesis of squamate phylogeny based on molecular data.  © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society , 2008, 152 , 131–152.     

The old wasp and the tree: fossils, phylogeny and biogeography in the Orussidae (Insecta, Hymenoptera)

The phylogenetic relationships of the fossil orussid taxa Mesorussus taimyrensis and Minyorussus luzzi are examined by analysing them together with a large data set compiled previously for the extant Orussidae. The fossils are placed in an unresolved trichotomy with the extant Orussidae. The phylogeny is used for evaluating the hypothesis that the ancestors of the family had reduced body size; the results of this analysis are inconclusive. The biogeographical history of the Orussidae is explored. The common ancestor of the family was probably widespread, the initial splitting events taking place prior to or coinciding with the separation of Laurasia from Gondwana. Later putative vicariance events can be correlated with the gradual breakup of Gondwana. However, the biogeographical history of the Orussidae is dominated by speciation within regions and dispersal. The minimum age of the common ancestor of the Orussidae is >180 Myr when estimated from the biogeographical pattern, >95 Myr when estimated from the phylogenetic position of the fossils; the earlier date is considered to be the most likely.  © 2004 The Linnean Society of London , Biological Journal of the Linnean Society , 2004, 82 , 139–160.     

Relationships among extant and fossil echimyids (Rodentia: Hystricognathi)

The echimyid rodents are the most diverse group of Neotropical hystricognaths, with approximately 40 extant and fossil genera. Craniodental characters are proposed in order to formulate hypotheses of phylogenetic relationships within the Echimyidae. A data matrix of 54 taxa and 50 characters is constructed and submitted to parsimony analyses using PAUP and WinClada programs. Analysis of the complete data set results in 47 448 most parsimonious trees 107 steps long. These trees are summarized in a strict consensus tree, which is taken as the main phylogenetic hypothesis resulting from this study. The monophyly of several currently recognized supraspecific taxa is not corroborated. These are: the subfamilies Eumysopinae, Echimyinae, Myocastorinae and Adelphomyinae; and the genera Proechimys , Echimys and Makalata . Conversely, the monophyly of Dactylomyinae and Trinomys is supported. New associations are proposed: (1) a clade comprising the extant Carterodon , Clyomys and Euryzygomatomys and the fossil Pampamys and Theridomysops placed at the base of the crown-group Echimyidae; (2) a clade uniting Proechimys , Hoplomys and Trinomys , which is the sister-taxon of (3) a clade including Mesomys , Lonchothrix , Myocastor and a clade with extant dactylomyines and echimyines and associated fossil taxa. Based on this phylogenetic hypothesis, patterns of tooth evolution in Echimyidae are discussed, and minimum ages for the divergence events within the family are estimated.  © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society , 2004, 142 , 445–477.