Diversity of wood-inhabiting Agaricomycotina on wood of different size classes in riparian forests of Uruguay

Many Agaricomycotina species are saprobes, playing a fundamental role in nutrient cycling in forest ecosystems by decomposing wood. Little is known about factors affecting diversity of wood-inhabiting fungi in the neotropical, warm temperate native forests of Uruguay. Most of these native forests are riparian harboring about 300 tree species. In this study, we assessed the diversity of wood-inhabiting fungi on wood of different size classes in riparian forests of Uruguay. We recovered 186 species of Agaricomycotina, including 113 corticioid and 58 polyporoid taxa. Eleven taxa accounted for 38% of the all the samples. The highest number of species was found on fine woody debris (FWD, 2–10 cm diam) than coarse woody debris (CWD, >10 cm diam) and very fine woody debris (VFWD, <2 cm diam). Species-accumulation curves did not reach an asymptote for any of the groups or wood diameter classes studied. Polyporoids were more frequently recorded on CWD (61% of collections) and corticioids on VFWD (77%). Species richness estimated by non-parametric estimators indicates an Agaricomycotina species richness between 450 and 700 taxa. Our results show that Uruguayan riparian forests, despite its limited area and fragmentation, support a wood-inhabiting Agaricomycotina diversity comparable to less fragmented forests with more plant diversity.     

Diversity and ecology of wood-inhabiting aphyllophoroid basidiomycetes on fallen woody debris in various forest types in Switzerland

This study on the ecology of aphyllophoroid wood-inhabiting basidiomycetes in Switzerland showed a remarkably high species diversity of both saprophytes and mycorrhiza-forming species. Phlebiella vaga, a saprophytic species, and Amphinema byssoides, a mycorrhizal symbiont, were the two most abundant species. A total of 3339 samples of fungal fruitbodies in 86 plots distributed all over Switzerland belonged to 238 species. The five main biogeographical regions of Switzerland showed different pattern of fungal species richness: while the Plateau at lower altitudes was found to be rather rich, the Northern Alps and Central Alps, with the highest amount of forests cover, yielded less species. Although the Southern Alps exhibited the lowest species richness, this region harbours a specific species set. These findings encourage for further studies in Central Europe, where many species of aphyllophoroid wood-inhabiting basidiomycetes seem to be highly under-investigated.     

Disturbance and diversity of wood-inhabiting fungi: effects of canopy gaps and downed woody debris

Experimental canopy gap formation and additions of coarse woody debris (CWD) are techniques intended to mimic the disturbance regime and accelerate the development of northern hardwood forests. The effects of these techniques on biodiversity and ecosystem functioning were investigated by surveying the abundance and diversity of wood-inhabiting fungi in six treatments: (i) unharvested control, (ii) control + fenced to exclude deer, (iii) gap creation + fenced to exclude deer, (iv) gap creation, (v) gap creation + CWD addition, and (vi) CWD addition under closed-canopy. A total of 1,885 fungal occurrences (polyporoid and corticoid fruiting bodies) representing 130 species were recorded on 11 tree species, with eight fungal species accounting for 52 % of all observations. A linear mixed model demonstrated significant differences in the abundance and diversity of wood-inhabiting fungi by treatment, with the gap creation + CWD addition treatment supporting the highest abundance and richness of fungal species. Non-metric multidimensional scaling demonstrated that stumps, sugar maple substrates, medium (20 to <25 cm) and large-diameter (>40 cm) substrates most strongly influenced fungal species occurrences. Rarefaction curves indicated that smaller diameter substrates (<20 cm) supported a rich fungal community, yet substrates in the largest diameter class (>40 cm) supported nearly 25 % of all fungal species detected. Rarefaction curves also highlighted the importance of well-decayed substrates and minor host tree species. A subset of fungal species was significantly more abundant in gap treatments. The results indicate that wood-inhabiting fungi are responsive to forest management intended to promote the structural attributes of old-growth northern hardwood forests.     

Application of species richness estimators for the assessment of fungal diversity

Species richness and distribution patterns of wood-inhabiting fungi and mycetozoans (slime moulds) were investigated in the canopy of a Central European temperate mixed deciduous forest. Species richness was described with diversity indices and species-accumulation curves. Nonmetrical multidimensional scaling was used to assess fungal species composition on different tree species. Different species richness estimators were used to extrapolate species richness beyond our own data. The reliability of the abundance-based coverage estimator, Chao, Jackknife and other estimators of species richness was evaluated for mycological surveys. While the species-accumulation curve of mycetozoans came close to saturation, that of wood-inhabiting fungi was continuously rising. The Chao 2 richness estimator was considered most appropriate to predict the number of species at the investigation site if sampling were continued. Gray's predictor of species richness should be used if statements of the number of species in larger areas are required. Multivariate analysis revealed the importance of different tree species for the conservation and maintenance of fungal diversity within forests, because each tree species possessed a characteristic fungal community. The described mathematical approaches of estimating species richness possess great potential to address fungal diversity on a regional, national, and global scale.     

Structures determining bryophyte species richness in a managed forest landscape in boreo-nemoral Europe

Forest patches with high biological value are protected as woodland key habitats (WKH), which are identified by the presence of forest structures and indicator species. However, management for conservation needs to consider also managed forests as habitats for species. In this respect, there is a need to set quantitative targets for species and structures at different landscape scales. Due to non-intensive methods of forest management used prior to 1940 in Latvia, it might be expected that large areas of forest have developed structures that can support many species characteristic of natural forests. The aim of the study was to create a model that best described the richness of bryophyte species that are characteristic of natural forests, using forest structures as explanatory factors. The structures and bryophyte communities on living trees and coarse woody debris (CWD) were described in plots along transects blindly placed in areas dominated by State forests under commercial management. Explanatory variables related to tree species composition and tree size explained 54% of the variation in WKH indicator species richness on living trees. The best explanatory factors were maximum diameter of deciduous tree species and CWD. Low richness of total bryophyte and indicator species was found on dead wood, and the amount of variation in bryophyte species richness on CWD explained by explanatory variables was low. The study indicates the importance of deciduous tree substrate in managed forests in maintaining the spatial continuity of epiphytic species diversity. However, the forests in the managed forest landscape did not support high diversity of epixylic species, even in the WKHs, due to low diversity of suitable dead wood substrate.     

Cryptogam communities on decaying deciduous wood – does tree species diversity matter?

Bryophyte and fungal communities were investigated on fallen trees representing seven deciduous tree species in a mixed near natural nemoral forest. Bryophytes were represented by 41 taxa, including several very frequent species. Of the 296 fungal species, most were recorded with very low frequency and the share of high frequent species was much lower than among the bryophytes. Species turnover was bigger in the fungal communities, compared to the bryophyte communities, and related to a higher extent to measured differences in environmental conditions. Tree species diversity was found to be an important factor for fungal species composition, while only small differences in bryophyte species composition were found between the different tree species. On the other hand bryophyte species richness showed distinct relations to tree species and microclimatic variables, a tendency which was not evident for fungal diversity. It is concluded that the two organism groups to some extent differ in their conservation demands. Thus, conservation of wood-inhabiting bryophytes requires prioritising of large, coherent forest stands in which a stable humid microclimate and a reasonable supply of dead wood is secured. Successful conservation of fungi requires that substantial amounts of dead wood are left for natural decay in a variety of natural forest environments representing different tree species, so that heterogeneity in dead wood types is secured.     

Assemblages of wood-inhabiting fungi along the gradients of succession and naturalness in boreal pine-dominated forests in Fennoscandia

In boreal forests, the level of naturalness and the stage of succession explain most of the variation in forest structure within a particular forest type. Thus, these two factors should also have a major effect on species assemblages in forests, at least on species groups associated with wood. The present study is the first attempt to analyze empirically the simultaneous effects of forest succession and naturalness on wood-inhabiting fungi, a taxonomic group of special ecological importance. The study area was situated in eastern Finland, middle boreal zone. A total of 41 study plots were established in Pinus sylvestris forests representing three levels of forest naturalness: natural, seminatural and intensively managed forests. Five stages of succession were distinguished according to the age of the dominating tree layer (<10, 40, 70, 110, and >150 yr old), except in managed forests where only four stages were available. A total of 5328 records of 195 species of fungi were made. The first, open stage of succession was clearly the most species-rich period of succession in all levels of forest naturalness. In natural and seminatural forests, the first stage of succession was also very distinctive in its fungal composition, and thus of special value in protecting biodiversity in boreal forests. In the succession following the first stage, the level of naturalness had more effect on assemblages of fungi than did the stage of succession. Intensive forest management affects threatened species particularly. In conclusion, natural young stages of succession should also be included in the network of boreal forest reserves.     

Substrate specialization of wood-decay aphyllophoroid fungi in the pine forests of the right riverside of the Ob headwaters

Substrate specialization of 196 species of wood-decay aphyllophoroid fungi has been studied in the pine forests of the right riverside of the Ob headwaters. Distribution of fungi species on deciduous and coniferous trees is bearing on the types of rot caused by them and on the character of substrate. The largest number of the species of wood-deacay fungi develop on forest-forming tree species. The majority of fungi, chiefly causing white rot develop on deciduous tress.     

Response of wood-inhabiting fungal community to fragmentation in a beech forest landscape

Fragmentation of natural habitats has become one of the main causes of the loss of biodiversity. To assess the effects of forest fragmentation on wood-inhabiting fungal community in a beech-dominated landscape, 15 differently shaped beech forest fragments were examined in northern Spain. This work covers all the wood-inhabiting macromycetes, including Basidiomycota and Ascomycota. A modelling approach was used to examine the predictability of the fungal community in a fragmented beech forest landscape. In the beech forest patches, a large proportion of edge, low tree densities and low levels of variety of woody debris caused a decrease of wood-inhabiting fungal richness. The fungal community composition proved complex to model due to its specific traits: it is made up of many species, most of which are rare, and each fungal group responds differently to environmental variables. Nevertheless, the dead wood availability and the exposure to light significantly affected the fungal community composition.     

Fungal endophyte communities in two tropical forests of southern India: diversity and host affiliation

Fifteen tree species from a tropical dry thorn forest and fifteen tree species from a tropical dry deciduous forest in the Mudumalai Wildlife Sanctuary, Nilgiri Biosphere Reserve, southern India, were surveyed for their foliar endophyte communities during the dry and wet seasons. Surface sterilized leaf segments of uniform dimension were plated on nutrient agar and culturable endophytes growing from the segments were identified. Endophyte diversity was greater in the dry thorn forest than in the dry deciduous forest in the dry season. Although the isolation frequency of culturable endophytes increased for both forests during the wet season, the assemblages were represented not by any unique fungal species but by the commonly occurring ones. Furthermore, although individual leaves were densely colonized by endophytes, only a few species of endophytes colonized the whole leaves; and, only a few fungal species dominated the foliar endophytic communities and were common for both forests during both dry and wet seasons. Thus, even under wet conditions that favour dispersal and infection by fungi, the endophyte diversity increased only marginally, an indication that certain tropical forests are not hyperdiverse with reference to fungal endophytes. This should be considered when using culturable endophyte diversity as a surrogate for estimating global fungal diversity.     

Community Turnover of Wood-Inhabiting Fungi across Hierarchical Spatial Scales

For efficient use of conservation resources it is important to determine how species diversity changes across spatial scales. In many poorly known species groups little is known about at which spatial scales the conservation efforts should be focused. Here we examined how the community turnover of wood-inhabiting fungi is realised at three hierarchical levels, and how much of community variation is explained by variation in resource composition and spatial proximity. The hierarchical study design consisted of management type (fixed factor), forest site (random factor, nested within management type) and study plots (randomly placed plots within each study site). To examine how species richness varied across the three hierarchical scales, randomized species accumulation curves and additive partitioning of species richness were applied. To analyse variation in wood-inhabiting species and dead wood composition at each scale, linear and Permanova modelling approaches were used. Wood-inhabiting fungal communities were dominated by rare and infrequent species. The similarity of fungal communities was higher within sites and within management categories than among sites or between the two management categories, and it decreased with increasing distance among the sampling plots and with decreasing similarity of dead wood resources. However, only a small part of community variation could be explained by these factors. The species present in managed forests were in a large extent a subset of those species present in natural forests. Our results suggest that in particular the protection of rare species requires a large total area. As managed forests have only little additional value complementing the diversity of natural forests, the conservation of natural forests is the key to ecologically effective conservation. As the dissimilarity of fungal communities increases with distance, the conserved natural forest sites should be broadly distributed in space, yet the individual conserved areas should be large enough to ensure local persistence.     

Bryophyte species richness and composition in young forests regenerated after clear-cut logging versus after wildfire and spruce budworm outbreak

The disturbance regime in mixed-wood forests of eastern Canada is characterized by both natural disturbances including wildfires and insect outbreaks as well as forestry. The understanding of how understorey plant assemblages respond to different disturbances is mostly limited to short-term wildfire-logging comparisons of vascular plants. Here, we compare patterns of species richness and composition of four bryophyte guilds in young forests (approx. 40 years old) regenerating after clear-cut logging, wildfire, and spruce budworm outbreak. In addition, young forests were compared with mature spruce-fir dominated stands (approx. 90 years old). Although similar in overall species richness at the scale of 1,000 m² all young forest types were compositionally distinct with fewer species than mature forests. Stands developed after spruce budworm outbreaks had the highest canopy cover values and the highest surface area of coarse woody debris. These stands had similar numbers of woody debris species as mature forests and were closest to mature forests in species composition. Wildfire-disturbed sites were dominated by deciduous trees and a high number of treebase species. Finally, young managed forest had the highest number of forest floor bryophytes at the scale of 100 m² among the three young forest types, but was compositionally far from mature forests in their woody debris flora. In conclusion, young forests regenerating after natural disturbances are distinctly different from young forests regenerated after clear-cutting and if natural disturbances are eliminated certain species (e.g., epixylic and treebase species) might become more restricted to older stands in the landscape.     

Saproxylic beetle assemblages related to silvicultural management intensity and stand structures in a beech forest in Southern Germany

Compared to agricultural land and spruce plantations, central European beech-oak forests are often relatively close to natural conditions. However, forest management may alter these conditions. In Steigerwald, southern Germany, a large beech-dominated forest area, three management intensities were applied during the past 30–70 years. Here, we examined the influence of management intensity on saproxylic beetles in >100-year old mature stands at 69 sampling plots in 2004. We sampled beetles using flight-window traps and time standard direct searches. The community structure based on presence/absence data changed remarkably along the gradient from unmanaged to low-intensity to high-intensity management, but these differences were not evident using abundance data from flight interception traps. Saproxylic species richness decreased in intensively managed forests. Elateridae and threatened species richness peaked in unmanaged forests and in forests under low-intensity management. Saproxylic species richness was dependent on certain micro-habitat factors. These factors were (1) the amount of dead wood for Elateridae, overall and threatened saproxylic beetle richness; (2) the amount of flowering plants for Cerambycidae; (3) the richness of wood-inhabiting fungi for Staphylinidae, Melandryidae and overall saproxylic beetle richness; and (4) the frequency of Fomes fomentarius for threatened species. Species richness was better explained by plot factors, such as dead wood or fungi, than by management intensity. These results suggest that the natural variation of dead wood niches (decay stages, snag sizes, tree cavities and wood-inhabiting fungi species) must be maintained to efficiently conserve the whole saproxylic beetle fauna of beech forests. Also, intensive management may alter the specialised saproxylic beetle community even if the initial tree-species composition is maintained, which was the case in our study. For monitoring the ecological sustainability of forest management we must focus on threatened species. If structures alone are sampled then the amount of dead wood is the best indicator for a rich saproxylic beetle fauna.     

A meta‐analysis of bird and mammal response to short‐rotation woody crops

Short‐rotation woody cropping (SRWC) refers to silvicultural systems designed to produce woody biomass using short harvest cycles (1–15 years), intensive silvicultural techniques, high‐yielding varieties, and often coppice regeneration. Recent emphasis on alternatives to fossil fuels has spurred interest in producing SRWC on privately owned and intensively managed forests of North America. We examined potential bird and small mammal response at the stand level to conversion of existing, intensively managed forests to SRWCs using meta‐analysis of existing studies. We found 257 effect sizes for birds (243 effect sizes) and mammals (14 effect sizes) from 8 studies involving Populus spp. plantations. Diversity and abundance of bird guilds were lower on short‐rotation plantations compared with reference woodlands, while abundance of individual bird species was more variable and not consistently higher or lower on SRWC plantations. Shrub‐associated birds were more abundant on SRWC plantations, but forest‐associated and cavity‐nesting birds were less abundant. Effects on birds appeared to decrease with age of the SRWC plantation, but plantation age was also confounded with variation in the type of reference forest used for comparison. Both guilds and species of mammals were less abundant on SRWC plantations. These conclusions are tentative because none of these studies directly compared SRWC plantations to intensively managed forests. Plantations of SRWCs could contribute to overall landscape diversity in forest‐dominated landscapes by providing shrubby habitat structure for nonforest species. However, extensive conversion of mature or intensively managed forests to SRWC would likely decrease overall diversity, especially if they replace habitat types of high conservation value.     

Linking wood-decay fungal communities to decay rates: Using a long-term experimental manipulation of deadwood and canopy gaps

Decomposition transfers carbon (C) from detrital organic matter to soil and atmospheric pools. In forested ecosystems, deadwood accounts for a large proportion of the detrital C pool and is primarily decomposed by wood-inhabiting fungi (WIF). Deadwood reductions linked to forest harvesting may alter WIF richness and composition, thus indirectly influencing the persistence of deadwood and its contribution to C and nutrient cycling. Forest structure was enhanced via canopy gap creation and coarse woody debris (CWD) addition that mimic natural disturbance by windfall within a deciduous northern hardwood forest (Wisconsin, USA) to examine its effect on deadwood-associated biodiversity and function. Experimental sugar maple (Acer saccharum) logs were sampled, for DNA extraction, ten years after placement to determine the assembly of fungal community composition and its relationship to wood decay rates.Our findings suggest that the WIF community responded to gap disturbance by favoring species able to persist under more extreme microclimates caused by gaps. CWD addition under closed canopy tended to favor a different species assemblage from gap creation treatments and the control, where canopy was undisturbed and CWD was not added. This was presumably due to consistent microclimatic conditions and the abundance of CWD substrates for host specialists. Fungal OTU richness was significantly and inversely related to CWD decay rates, likely due to competition for resources. In contrast, fungal OTU composition was not significantly related to CWD decay rates, canopy openness or CWD addition amounts. Our study site represents a diverse fungal community in which complex interactions among wood-inhabiting organisms and abiotic factors are likely to slow CWD decomposition, which suggests that maintaining a biodiverse and microsite-rich ecosystem may enhance the capacity for C storage within temperate forests.     

Diversity and ecology of aphyllophoroid fungi on driftwood logs on the shores of the Baltic Sea

Driftwood is woody debris that is floating on the sea or brought onto the shore by the sea. It can have a natural origin but often it originates from human activities. Driftwood has a significant ecological role as a microhabitat for a large range of species. Dead-wood-associated aphyllophoroid fungi on driftwood have been studied rather little globally, and there are hardly any studies conducted in the Baltic Sea. We studied the diversity and ecology of polypores and corticioids growing on driftwood (man-made logs) on the shores of the Finnish SW-archipelago. In total, 394 driftwood logs were surveyed for visible fungal sporocarps. We found altogether 145 species (1023 records) of which approximately three-fourths were corticioids. The driftwood logs hosted several rare and noteworthy species, such as one new corticioid species, 16 nationally rare species, and 40 new species to the region. The five most common species accounted for one-third of all observations, whereas 82 species (11% of all records) were recorded only once or twice. Larger logs hosted, on average, more species compared to small-diameter logs. The mean number of species increased significantly when comparing the logs in the first and the middle stages of decay. Our results show that driftwood logs can host a wide variety of species and they provide an important substrate for many dead-wood-associated fungi, including species of conservation concern and species with restricted ecological requirements. Driftwood hosted several species that have not been previously found in the archipelago forests, and the logs clearly enrich the fungal diversity in the area. Our results encourage to increase dead wood for fungi in coastal forests where it has been dramatically decreased as a result of strong hemeroby.     

Markedly Divergent Tree Assemblage Responses to Tropical Forest Loss and Fragmentation across a Strong Seasonality Gradient

We examine the effects of forest fragmentation on the structure and composition of tree assemblages within three seasonal and aseasonal forest types of southern Brazil, including evergreen, Araucaria, and deciduous forests. We sampled three southernmost Atlantic Forest landscapes, including the largest continuous forest protected areas within each forest type. Tree assemblages in each forest type were sampled within 10 plots of 0.1 ha in both continuous forests and 10 adjacent forest fragments. All trees within each plot were assigned to trait categories describing their regeneration strategy, vertical stratification, seed-dispersal mode, seed size, and wood density. We detected differences among both forest types and landscape contexts in terms of overall tree species richness, and the density and species richness of different functional groups in terms of regeneration strategy, seed dispersal mode and woody density. Overall, evergreen forest fragments exhibited the largest deviations from continuous forest plots in assemblage structure. Evergreen, Araucaria and deciduous forests diverge in the functional composition of tree floras, particularly in relation to regeneration strategy and stress tolerance. By supporting a more diversified light-demanding and stress-tolerant flora with reduced richness and abundance of shade-tolerant, old-growth species, both deciduous and Araucaria forest tree assemblages are more intrinsically resilient to contemporary human-disturbances, including fragmentation-induced edge effects, in terms of species erosion and functional shifts. We suggest that these intrinsic differences in the direction and magnitude of responses to changes in landscape structure between forest types should guide a wide range of conservation strategies in restoring fragmented tropical forest landscapes worldwide.     

Patterns in woody species diversity, richness and partitioning of diversity in forest communities of tropical deciduous forest biome

The regressive succession model hypothesizes tropical savanna-woodlands to be a degraded stage of primary deciduous forests. Species diversity, richness and evenness of woody species in savanna-woodlands, secondary deciduous forests and mature deciduous forests of central India were compared to test if the regressive succession explained pattern in species richness, diversity, functional diversity and basal area. At the plot scale (0.1 ha) secondary deciduous forests and savanna-woodlands had similar species diversity, a pattern not consistent with the regressive model of deciduous forest succession, and mature deciduous forests had greater species diversity and richness (p<0.05). When examined at a larger scale or community scale by pooling all plots within a community type, the trend in diversity persisted even with greater effort allocated to sampling of secondary deciduous forests. Species richness at the community scale was greatest in secondary deciduous forest as expected from species area relationship. The communities shared 28 woody species but the species composition was significantly different between the communities. I suggest that conservation of tropical deciduous forests based on regressive succession model is problematic.