Thin layer chromatography of commercial samples of amido black 10B

The tannic acid-phosphomolybdic acid-amido black (TPA) stain has been used primarily for staining hemoglobin. That different dye lots of amido black cause variable staining is documented in the literature. Nine commercial samples of amido black were investigated using thin layer chromatography; all of these dyes contained colored contaminants. Separation of contaminants was achieved using silica gel thin layer chromatography and a solvent system of 95% ethanol:90% phenol:concentrated NH4OH, 12:9:3. TPA staining of red blood cells was improved by using purified amido black.     

Thin Layer Chromatography of Commercial Samples of Amido Black 10B

The tannic acid-phosphomolybdic acid-amido black (TPA) stain has been used primarily for staining hemoglobin. That different dye lots of amido black cause variable staining is documented in the literature. Nine commercial samples of amido black were investigated using thin layer chromatography; all of these dyes contained colored contaminants. Separation of contaminants was achieved using silica gel thin layer chromatography and a solvent system of 95% ethanol:90% phenol:concentrated NH₄OH, 12:9:3. TPA staining of red blood cells was improved by using purified amido black.     

Purity of commercial non-certified European samples of Pyronin Y

Summary The purity of six European non-certified samples of Pyronin Y was compared with that of two American samples certified by the Biological Stain Commission. The methods used were spectrophotometry and a Methyl Green-Pyronin staining test (both as applied by the Biological Stain Commission), thin layer chromatography, mass spectrometry, determination of pH, and content of some electrolytes. It was found that none of the European batches of Pyronin Y passed the complete test as prescribed by the Biological Stain Commission. Their dye content was uniformly low (between 5 and 19%). Furthermore, thin layer chromatography and mass spectrometry revealed that two of the dye samples contained no Pyronin Y or only traces.It is concluded that assessment of an unknown sample of a dye labelled Pyronin Y should be initiated with thin layer chromatography. The pH and content of electrolytes in an aqueous solution of the dye should also be determined in order to obtain reproducible staining results. Finally, the value of the work performed by the Biological Stain Commission is underlined, although more sophisticated methods are necessary for testing the purity of dyestuffs.     

Analytical and preparative chromatographic procedures for obtaining pure cresyl violet and cresyl red from commercial cresyl violet

Abstract

Cresyl violet and cresyl red, components of commercial cresyl violet acetate, were separated and purified using preparative column liquid chromatography. The stationary phase was silica gel and gradient elution was carried out using chloroform:methanol. The purified dyes were obtained in high yield; 51% of the original lot was recovered as cresyl violet and 40% as cresyl red. Separated materials were characterized by nuclear magnetic resonance and mass spectroscopy; UV-visible and Fourier-transform infrared spectra also were obtained for samples of pure cresyl violet and cresyl red. The colored constituents of the commercial dye lot were identified using thin layer chromatography and reverse phase high performance liquid chromatography. Both methodologies were suitable for routine testing; reverse phase high performance liquid chromatography is an appropriate tool for quality control and high resolution identification of these compounds.     

Agar Gel Electrophoresis: an Advantageous Technique for the Investigation of Certain Biological Stains

The agar gel method can be used to study direct dyes, for which paper can not be used because such dyes have a high affinity for the paper. A 1% gel made up with a buffer in the range of pH 9-4, of ionic strength 0.05, and spread on 8 × 10 cm lantern slides provides suitable conditions. Dyes to be tested are placed in 1.5 mm wells made in the agar and subjected to a current of 2.5 ma/cm width, at a potential of about 115 v. Separations, if any, occur in about 20 min. Mobility is affected by ionic strength; values above 0.05 may be less satisfactory by reducing mobility and allowing excessive diffusion of the dye. The method allows resolution of dyes whose molecular charges differ by only one unit. Photographic recording is sharp, since the gel is transparent. The method can be recommended as generally useful for studying both acid and direct dyes.     

Analysis of sugars in traditional Chinese drugs

This review is presented of chromatography and electromigration methods currently in use to determine sugars in traditional Chinese drugs: gas chromatography (GC), high-performance liquid chromatography (HPLC), ion-exchange chromatography, gel column chromatography (GCC), paper chromatography (PC) and thin layer chromatography (TLC), capillary electrophoresis (CE) and gel electrophoresis (GEP). The detection methods combined with above separation methods including ultra-violet, mass spectra, fluorescent light, refractive index (RI), electrochemical detection are also described. For the complicacy of structural analysis of polysaccharides in traditional Chinese drugs, the hyphenation procedures concerned with this analysis are introduced in this article too.     

An investigation of new commercial samples of Methyl Green and Pyronin Y

Summary New commercial samples of Methyl Green (Gurr Certistain), Pyronine G (Gurr Certistain) and Pyronin Y (Polysciences) have been investigated using spectrophotometry, thin layer chromatography and nuclear magnetic resonance, in addition to standardized simultaneous and sequential staining methods using purified Ethyl Green and pure Pyronin Y as reference dyes.The Methyl Green was found to be Ethyl Green contaminated with Crystal Violet. It did not have any advantages compared with Ethyl Green supplied by American dye companies. The Pyronine G sample was Pyronin Y with a high dye content that gave good staining results when used with purified Ethyl Green. Pyronin Y from Polysciences was found to be essentially pure Pyronin Y.     

Isoelectric focusing following by electrophoresis of proteins for visualizing their titration curves by zymogram and immunofixation

After isoelectric focusing followed by electrophoresis at right angles in the same gel slab, it is possible to visualize the titration curve of proteins by zymograms or immunofixation even of an unpurified sample. This information can be very useful for the selection of the proper purification strategy by charge-dependent methods, e.g. ion-exchange chromatography, zone and disc electrophoresis and isotachophoresis. The titration curve also gives information on the stability of the protein as a function of the prevailing pH of the medium, in the pH 3-10 range. A region of instability is found for most proteins in acidic conditions, below pH 4.5, while most proteins are stable in the alkaline pH region, at least up to pH 10. The best method for developing zymograms and immunoprints appears to pH 10. The best method for developing zymograms and immunoprints appears to be the 'sandwich technique', by which a thin agarose slab, cast on an hydrophilic polyester sheet, and impregnated with appropriate reagents, is left in contact with a polyacrylamide gel thin layer used to generate the titration curves.     

Comparison of historic Grübler dyes with modern counterparts using thin layer chromatography.

The aniline dye industry was created in 1856 when William Perkin prepared the dye, mauve, from coal tar. Following that discovery, several dye manufacturing businesses were formed in Western Europe, most successfully in Germany. It was to these companies that early investigators turned to obtain these new dyes for the developing field of biology. In 1880, Dr. Georg Grübler started a company in Germany to supply the needs of biologists. Grübler dyes developed a reputation for excellence. In the study reported here, 29 samples of 12 Grübler dyes were compared to modern counterparts using thin layer chromatography. The dyes studied were basic fuchsine, acid fuchsine, safranine, pyronine, aniline blue, ponceau, gentian violet, methylene blue, orange G, malachite green, and Sudan III and IV. I found that these early Grübler dyes closely resembled modern day counterparts; however, the use of synonyms was confusing and some of the fat stains were mislabeled by modern criteria. The chromatograms of some dyes exhibited smearing, probably representing multiple closely related dye species. The study of old dyes provides interesting comparisons with modern counterparts as the center of dye manufacturing is moving from Europe and the United States to Asia.     

Comparison of historic Grübler dyes with modern counterparts using thin layer chromatography

The aniline dye industry was created in 1856 when William Perkin prepared the dye, mauve, from coal tar. Following that discovery, several dye manufacturing businesses were formed in Western Europe, most successfully in Germany. It was to these companies that early investigators turned to obtain these new dyes for the developing field of biology. In 1880, Dr. Georg Grübler started a company in Germany to supply the needs of biologists. Grübler dyes developed a reputation for excellence. In the study reported here, 29 samples of 12 Grübler dyes were compared to modern counterparts using thin layer chromatography. The dyes studied were basic fuchsine, acid fuchsine, safranine, pyronine, aniline blue, ponceau, gentian violet, methylene blue, orange G, malachite green, and Sudan III and IV. I found that these early Grübler dyes closely resembled modern day counterparts; however, the use of synonyms was confusing and some of the fat stains were mislabeled by modern criteria. The chromatograms of some dyes exhibited smearing, probably representing multiple closely related dye species. The study of old dyes provides interesting comparisons with modern counterparts as the center of dye manufacturing is moving from Europe and the United States to Asia.     

枯草芽孢杆菌内切木聚糖酶的分离纯化与鉴定

目的：建立一种简便、快速的木聚糖酶分离和提取方法。方法：采用活性聚丙烯酰胺凝胶电泳和均质提取法相结合,分离纯化枯草芽孢杆菌(Bacillus subtilis)固体培养基发酵产物中的木聚糖酶,进一步用薄层色谱和高压液相色谱对木聚糖酶进行鉴定。结果：采用活性聚丙烯酰胺凝胶电泳和均质提取法相结合,从枯草芽孢杆菌(Bacillus subtilis)固体培养基发酵产物中分离得到了两种内切木聚糖酶,酶解桦木木聚糖的产要产物以木二糖和木三糖为主。结论：活性聚丙烯酰胺凝胶电泳和均质提取法相结合是一种新的分离纯化木聚糖酶的简便、有效方法。     

The improved method in agarose gel electrophoresis of nucleic acid

In most molecular experiments, nucleic acids are subjected to agarose gel electrophoresis to determine the size of the molecule. The addition of a nucleic acid dye allows the nucleic acid to be detected under the UV image system after running the gel, so the nucleic acid dye is an integral part of the electrophoresis experiment. But when considering the mutagenicity and toxicity of nucleic acid dyes, one must be careful to insure the proper disposal of experimental waste. In this article, a new usage of nucleic acid dye in agarose gel electrophoresis is described where the nucleic acid dyes were added to the loading buffer and nucleic acid marker buffer. The results show that this method has advantages as: a smaller amount of dye can be used, there is less time in contact with the dye, and its operation is easier and reduces toxicity damage. Also the bands showed a much clearer image, having a lower background value. The improved method shows better results with lower toxicity and is superior to the traditional method.     

Plasma proteomics of lung cancer by a linkage of multi-dimensional liquid chromatography and two-dimensional difference gel electrophoresis

To investigate aberrant plasma proteins in lung cancer, we compared the proteomic profiles of serum from five lung cancer patients and from four healthy volunteers. Immuno-affinity chromatography was used to deplete highly abundant plasma proteins, and the resulting plasma samples were separated into eight fractions by anion-exchange chromatography. Quantitative protein profiles of the fractionated samples were generated by two-dimensional difference gel electrophoresis, in which the experimental samples and the internal control samples were labeled with different dyes and co-separated by two-dimensional polyacrylamide gel electrophoresis. This approach succeeded in resolving 3890 protein spots. For 364 of the protein spots, the expression level in lung cancer was more than twofold different from that in the healthy volunteers. These differences were statistically significant (Student's t-test, p-value less than 0.05). Mass spectrometric protein identification revealed that the 364 protein spots corresponded to 58 gene products, including the classical plasma proteins and the tissue-leakage proteins catalase, clusterin, ficolin, gelsolin, lumican, tetranectin, triosephosphate isomerase and vitronectin. The combination of multi-dimensional liquid chromatography and two-dimensional difference gel electrophoresis provides a valuable tool for serum proteomics in lung cancer.     

Cationic dye binding by hyaluronate fragments: dependence on hyaluronate chain length

Sodium hyaluronate, digested with bovine testicular hyaluronidase, yielded a mixture of oligosaccharides with identical repeating disaccharide structures and differing molecular weights. The oligosaccharides were separated into a ladder-like series of bands by electrophoresis on a 10% polyacrylamide gel matrix. Coelectrophoresis of purified oligosaccharides has established that adjacent bands differ in chain length by one disaccharide unit. This procedure formed the basis for a rapid screening method in which the binding of cationic dyes by hyaluronate oligosaccharides may be assayed. As a function of chain length, the oligosaccharides showed a marked change in dye binding. Species containing less than seven repeating disaccharide units are not detected by any dye tested, even at very high sample loads. Larger oligosaccharides show an increase in dye binding. The chain length at which constant maximal dye binding is reached depends on the dye structure and solvent conditions, varying from approximately 12 to 30 disaccharide units. The hyaluronate fragments of sufficient chain length to duplicate polymer behavior should be useful models for the study of hyaluronate structure and interactions in solution.     

Standardization of the Feulgen-Schiff technique. Staining characteristics of pure fuchsin dyes; a cytophotometric investigation

Four fuchsin analogues (Pararosaniline, Rosaniline. Magenta II and New Fuchsin) usually found in Basic Fuchsin have been applied as chemically pure dyes to the Feulgen-technique. Total nuclear absorption and wavelength of the absorption maximum were measured by microspectrophotometry in Feulgen stained cytological and plastic embedded histological liver samples, and in lymphocyte nuclei in human peripheral blood smears; absorption spectra of Feulgen stained DNA-polyacrylamide films were determined by spectrophotometry. The grey value distribution of tetraploid liver cell nuclei was calculated with an image analyzer. The staining characteristics of the pure dyes were compared to commercial fuchsin samples from various suppliers. Reverse phase thin layer chromatography was used for characterization and qualitative separation of commercial batches. Pure fuchsin analogues were all equally suitable for Feulgen staining: with respect of staining intensity all pure fuchsin dyes gave nearly identical results with a bathochromic shift of the absorption maximum from Pararosaniline to New Fuchsin of about 8 microns. Differences in staining results observed among the commercial dyes were due to varying dye content, contamination with an acridine-like fluorescent compound or simply mislabelling of samples. Pure Pararosaniline is recommended for a standard Feulgen technique.     

Characterization of five commercially available samples of acridine yellow

Commercial samples of acridine yellow, all labeled C.I. 46025, have been analyzed by thin layer chromatography, UV and visible light spectroscopy, mass spectrometry, and photodynamic efficiency in the inactivation of bacteriophage phi X174. Three types of sample were clearly delineated: i) true acridine yellow (3,6-diamino-2,7-dimethylacridine) whose spectral and chromatographic properties are very close to those of proflavine (3,6-diaminoacridine); ii) a pure but different dye tentatively identified as euchrysine (3,6-diamino-2,7,9-trimethylacridine), since on the basis of mass spectral data, it contains an additional methyl group not fixed on the amino groups; and iii) a complex dye with its own special properties and whose main yellow component has a molecular weight and a mass spectrum compatible with an overall formula of C16H16N2S. The three types of dye could be distinguished on the basis of simple tests. Acridine yellow is photodynamically almost as efficient as proflavine, but the two other dyes are very poor sensitizers.     

Novel method for purification of staphylococcal enterotoxin A

A novel single-step procedure for the purification of staphylococcal enterotoxin A (SEA), namely, dye ligand affinity chromatography with the triazine dye Red A, was developed. SEA purified by this method produced a single band when subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The yield from 5 liters of culture supernatant was 0.113 g, corresponding to an overall yield of 55%. In some instances, purification of SEA from culture supernatants by dye ligand affinity chromatography produced two enterotoxin peaks that could be eluted from the column with 300 and 500 mM phosphate buffer (pH 6.8). Enterotoxin from these peaks produced a single band when subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, but multiple bands were observed on isoelectric focusing gels. This method of purification represents a significant improvement in time, yields, and purity of enterotoxin over previously published purification methods.     

Novel method for purification of staphylococcal enterotoxin A.

A novel single-step procedure for the purification of staphylococcal enterotoxin A (SEA), namely, dye ligand affinity chromatography with the triazine dye Red A, was developed. SEA purified by this method produced a single band when subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The yield from 5 liters of culture supernatant was 0.113 g, corresponding to an overall yield of 55%. In some instances, purification of SEA from culture supernatants by dye ligand affinity chromatography produced two enterotoxin peaks that could be eluted from the column with 300 and 500 mM phosphate buffer (pH 6.8). Enterotoxin from these peaks produced a single band when subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, but multiple bands were observed on isoelectric focusing gels. This method of purification represents a significant improvement in time, yields, and purity of enterotoxin over previously published purification methods.     

Proteomic analysis of redox- and ErbB2-dependent changes in mammary luminal epithelial cells using cysteine- and lysine-labelling two-dimensional difference gel electrophoresis

Differential protein expression analysis based on modification of selected amino acids with labelling reagents has become the major method of choice for quantitative proteomics. One such methodology, two-dimensional difference gel electrophoresis (2-D DIGE), uses a matched set of fluorescent N-hydroxysuccinimidyl (NHS) ester cyanine dyes to label lysine residues in different samples which can be run simultaneously on the same gels. Here we report the use of iodoacetylated cyanine (ICy) dyes (for labelling of cysteine thiols, for 2-D DIGE-based redox proteomics. Characterisation of ICy dye labelling in relation to its stoichiometry, sensitivity and specificity is described, as well as comparison of ICy dye with NHS-Cy dye labelling and several protein staining methods. We have optimised conditions for labelling of nonreduced, denatured samples and report increased sensitivity for a subset of thiol-containing proteins, allowing accurate monitoring of redox-dependent thiol modifications and expression changes. Cysteine labelling was then combined with lysine labelling in a multiplex 2-D DIGE proteomic study of redox-dependent and ErbB2-dependent changes in epithelial cells exposed to oxidative stress. This study identifies differentially modified proteins involved in cellular redox regulation, protein folding, proliferative suppression, glycolysis and cytoskeletal organisation, revealing the complexity of the response to oxidative stress and the impact that overexpression of ErbB2 has on this response.     

Thin layer gel chromatography of dextrans

Microgram quantities of soluble dextran fractions have been separated by thin layer gel chromatography. The dextrans are first combined with a triazine dye to render them visible during the chromatography and to facilitate the densitometric evaluation of the chromatograms. The method allows the determination of dextran molecular weights up to approximately 100 000 and can also be used in studying the polydispersity of the fractions.