New remains of Hyaenodontidae (Creodonta,Mammalia) from the Oligocene of Central Mongolia

New specimens of hyaenodontid creodonts are described which were unearthed in Mongolia by the Austrian–Mongolian Paleontological expeditions. Five taxa are identified: Hyaenodon eminus, Hyaenodon pervagus, Hyaenodon cf. incertus, Hyaenodon cf. mongoliensis, and cf. Hyaenodon gigas. Hitherto unknown morphological details are reported for most of these species. The implications to systematic of the species and the genus Hyaenodon are discussed. These Hyaenodon remains suggest a separate evolutionary lineage, with different species in Europe and Asia, even if the genus is also known from contemporary faunas of Europe and North America.     

Forensic and population genetic analyses of the GlobalFiler STR loci in the Mongolian population

We have analyzed 24 loci including autosomal and Y-chromosomal short tandem repeats (STRs), Y-indel, and sex-determining marker in a sample of 267 unrelated individuals from the Mongolian population using the GlobalFiler? PCR Amplification Kit to provide an expanded and more reliable forensic database. Khalkh among 15 Mongolian minor-groups accounts for about 80% of the entire Mongolian population. A total of 267 different DNA profiles were found in this work. The highest gene diversity was observed in the SE33 (0.9376) locus, and the lowest value was found in the TPOX (0.6142) locus. Although individual power of discrimination estimates varied at the studied loci, combined probability of match from the 21 STR loci was estimated to be 1.139?×?10^?24, which is highly informative. Based on the results of pairwise F _ST genetic distances and multi-dimensional scaling plot showed that Mongolians were clustered into Europeans and Asians, although Mongolia is geographically located in Northeastern Asia. Thus, the present survey of the Mongolian population may help establish a comprehensive reference database for forensic and population genetic analyses.     

Molecular epidemiological survey of Babesia bovis,Babesia bigemina,and Babesia sp. Mymensingh infections in Mongolian cattle

Bovine babesiosis caused by Babesia species is an economically significant disease of cattle. Severe clinical babesiosis in cattle is caused by Babesia bovis, B. bigemina, and the recently discovered Babesia sp. Mymensingh. Mongolia is an agricultural country with a large cattle inventory. Although previous studies have detected active infections of B. bovis and B. bigemina in Mongolian cattle, only a few provinces were surveyed. Additionally, the endemicity of Babesia sp. Mymensingh in Mongolia remains unknown. We screened blood DNA samples from 725 cattle reared in 16 of the 21 Mongolian provinces using B. bovis-, B. bigemina-, and Babesia. sp. Mymensingh-specific PCR assays. The overall positive rates of B. bovis, B. bigemina, and Babesia sp. Mymensingh were 27.9% (n = 202), 23.6% (n = 171), and 5.4% (n = 39), respectively. B. bovis and B. bigemina were detected in cattle in all surveyed provinces; whereas Babesia sp. Mymensingh was detected in 11 of the 16 surveyed provinces. On a per province basis, the B. bovis- B. bigemina-, and Babesia sp. Mymensingh-positive rates were 5.9–52.0%, 9.1–76.3%, and 0–35.7%, respectively. In conclusion, this is the first report of Babesia sp. Mymensingh in Mongolia. In addition, we found that species of Babesia that are capable of causing bovine clinical babesiosis, including B. bovis, B. bigemina, and Babesia sp. Mymensingh, are widespread throughout the country.     

The Honey Bee Pathosphere of Mongolia: European Viruses in Central Asia

Parasites and pathogens are apparent key factors for the detrimental health of managed European honey bee subspecies, Apis mellifera. Apicultural trade is arguably the main factor for the almost global distribution of most honey bee diseases, thereby increasing chances for multiple infestations/infections of regions, apiaries, colonies and even individual bees. This imposes difficulties to evaluate the effects of pathogens in isolation, thereby creating demand to survey remote areas. Here, we conducted the first comprehensive survey for 14 honey bee pathogens in Mongolia (N = 3 regions, N = 9 locations, N = 151 colonies), where honey bee colonies depend on humans to overwinter. In Mongolia, honey bees, Apis spp., are not native and colonies of European A. mellifera subspecies have been introduced ~60 years ago. Despite the high detection power and large sample size across Mongolian regions with beekeeping, the mite Acarapis woodi, the bacteria Melissococcus plutonius and Paenibacillus larvae, the microsporidian Nosema apis, Acute bee paralysis virus, Kashmir bee virus, Israeli acute paralysis virus and Lake Sinai virus strain 2 were not detected, suggesting that they are either very rare or absent. The mite Varroa destructor, Nosema ceranae and four viruses (Sacbrood virus, Black queen cell virus, Deformed wing virus (DWV) and Chronic bee paralysis virus) were found with different prevalence. Despite the positive correlation between the prevalence of V. destructor mites and DWV, some areas had only mites, but not DWV, which is most likely due to the exceptional isolation of apiaries (up to 600 km). Phylogenetic analyses of the detected viruses reveal their clustering and European origin, thereby supporting the role of trade for pathogen spread and the isolation of Mongolia from South-Asian countries. In conclusion, this survey reveals the distinctive honey bee pathosphere of Mongolia, which offers opportunities for exciting future research.     

Genomic Analysis of Natural Selection and Phenotypic Variation in High-Altitude Mongolians

Deedu (DU) Mongolians, who migrated from the Mongolian steppes to the Qinghai-Tibetan Plateau approximately 500 years ago, are challenged by environmental conditions similar to native Tibetan highlanders. Identification of adaptive genetic factors in this population could provide insight into coordinated physiological responses to this environment. Here we examine genomic and phenotypic variation in this unique population and present the first complete analysis of a Mongolian whole-genome sequence. High-density SNP array data demonstrate that DU Mongolians share genetic ancestry with other Mongolian as well as Tibetan populations, specifically in genomic regions related with adaptation to high altitude. Several selection candidate genes identified in DU Mongolians are shared with other Asian groups (e.g., EDAR), neighboring Tibetan populations (including high-altitude candidates EPAS1, PKLR, and CYP2E1), as well as genes previously hypothesized to be associated with metabolic adaptation (e.g., PPARG). Hemoglobin concentration, a trait associated with high-altitude adaptation in Tibetans, is at an intermediate level in DU Mongolians compared to Tibetans and Han Chinese at comparable altitude. Whole-genome sequence from a DU Mongolian (Tianjiao1) shows that about 2% of the genomic variants, including more than 300 protein-coding changes, are specific to this individual. Our analyses of DU Mongolians and the first Mongolian genome provide valuable insight into genetic adaptation to extreme environments.     

Graylings (Thymallidae) of water bodies in western Mongolia: Morphological and genetic diversity

Morphological characters, the pattern on the dorsal fin, some biological parameters, and variations of mtDNA control region were studied in graylings of the upper reaches of the Khovd River (western Mongolia). Obtained results demonstrated that grayling of this part of the river was presented by great (predatory) and small (benthophagous) forms of Mongolian grayling Thymallus brevirostris. The last form was erroneously equated to Arctic grayling Thymallus arcticus. However, genetic unity of great and small forms, homogeneity by meristic characters, and similarity in varying the color of scales and pattern on the dorsal fin attest their belonging to the same species. Water bodies of the Central Asian basin are also populated with populations of Mongolian grayling with mixed type of feeding and signs of external structure, which are typical for both forms in a different degree.     

Psammophytic woodlands of the steppe zone in Inner Mongolia

Originated from various vegetation types, psammophytic woodlands on sandy dunes of the steppe zone in Inner Mongolia are rather diverse. The commonest types are woodlands with Pinus sylvestris var. mongolica, P. tabulaeformis, Picea meyeri, Juniperus rigida, Populus davidiana, and Betula platyphylla. In Daqinggou of Horqin sandy land, a mixed broad-leaved woodland consists of Quercus, Acer, Fraxinus, Juglans, Chosenia, Populus, and Ulmus. Palaeoecological evidence demonstrates that these woodland stands are Middle Holocene remnants. The plant communities of psammophytic woodlands are simplified in floristic composition and structure. The relict woodland stands play an important role in the conservation and restoration of vegetation in Inner Mongolia. Only three nature reserves of relict woodland types in Inner Mongolia have been established. Based on this study, an additional reserve is suggested to conserve the complex of psammophytic woodlands.     

Molecular Detection and Seroprevalence of Babesia microti among Stock Farmers in Khutul City,Selenge Province,Mongolia

Babesiosis is an emerging tick-borne disease in humans worldwide; however, little is known about the frequency of infection or prevalence of this disease in other parts of the world, excluding North America. In this study, we aimed to investigate Babesia microti infection frequency in a human population in Mongolia. One hundred blood samples were collected from stock farmers living in Khutul city of Selenge province, Mongolia. The sera and DNA from blood samples were evaluated for the presence of B. microti infection by using indirect fluorescent antibody (IFA) tests and PCR. The positive detection rates obtained using the IFA tests and PCR assays were 7% and 3%, respectively. This study is the first to detect of B. microti infections based on antibody seroprevalence or PCR assays for the presence of B. microti DNA in a Mongolian population.     

Species-specific growth-climate responses of Dahurian larch (Larix gmelinii) and Mongolian pine (Pinus sylvestris var. mongolica) in the Greater Khingan Range,northeast China

Responses of tree growth to climate are usually spatially heterogeneous. Besides regionally varying external environments, species specificity is a crucial factor in determining said spatial heterogeneity. A better understanding of this species specificity would improve our estimations of the warming effects on forests. In this study, we selected two widely-distributed boreal conifers, Dahurian larch (Larix gmelinii) and Mongolian pine (Pinus sylvestris var. mongolica), to compare their growth-climate responses, including long-term growth-climate correlations and short-term growth resilience to drought. We sampled 160 trees and 481 tree-ring cores from the two species in two pure and two mixed forests, located in the Greater Khingan Range, northeast China. We found that Dahurian larch was generally positively correlated with spring temperature and negatively correlated with summer temperature. In contrast, Mongolian pine was more sensitive to summer moisture. Our results suggest that the main climatic limitations were low spring temperatures for Dahurian larch and summer moisture deficits for Mongolian pine. Dahurian larch represented higher growth resistance to drought, while Mongolia pine represented higher recovery. Based on this, we inferred that Dahurian larch was more vulnerable to extreme droughts, while Mongolian pine was more vulnerable to frequent droughts. We also demonstrated the effects of forest type on growth-climate responses. The negative effects of summer temperatures on Mongolian pine seemed to be more significant in mixed forests. As warming continued, Mongolian pine in this area would suffer severer moisture deficits, especially when coexisting with Dahurian larch. Our results suggest that Dahurian larch gained an advantage in the competition with Mongolian pine during high moisture stress. Driven by the warming trends, the species specificity in growth response would ultimately promote the separation of the two species in distribution. This study will help improve our estimations of the warming effects on forests and develop more species-targeted forest management practices.     

Genome-wide analysis reveals population structure and selection in Chinese indigenous sheep breeds

Background

Traditionally, Chinese indigenous sheep were classified geographically and morphologically into three groups: Mongolian, Kazakh and Tibetan. Herein, we aimed to evaluate the population structure and genome selection among 140 individuals from ten representative Chinese indigenous sheep breeds: Ujimqin, Hu, Tong, Large-Tailed Han and Lop breed (Mongolian group); Duolang and Kazakh (Kazakh group); and Diqing, Plateau-type Tibetan, and Valley-type Tibetan breed (Tibetan group).

Results

We analyzed the population using principal component analysis (PCA), STRUCTURE and a Neighbor-Joining (NJ)-tree. In PCA plot, the Tibetan and Mongolian groups were clustered as expected; however, Duolang and Kazakh (Kazakh group) were segregated. STRUCTURE analyses suggested two subpopulations: one from North China (Kazakh and Mongolian groups) and the other from the Southwest (Tibetan group). In the NJ-tree, the Tibetan group formed an independent branch and the Kazakh and Mongolian groups were mixed. We then used the d_i statistic approach to reveal selection in Chinese indigenous sheep breeds. Among the 599 genome sequence windows analyzed, sixteen (2.7%) exhibited signatures of selection in four or more breeds. We detected three strong selection windows involving three functional genes: RXFP2, PPP1CC and PDGFD. PDGFD, one of the four subfamilies of PDGF, which promotes proliferation and inhibits differentiation of preadipocytes, was significantly selected in fat type breeds by the Rsb (across pairs of populations) approach. Two consecutive selection regions in Duolang sheep were obviously different to other breeds. One region was in OAR2 including three genes (NPR2, SPAG8 and HINT2) the influence growth traits. The other region was in OAR 6 including four genes (PKD2, SPP1, MEPE, and IBSP) associated with a milk production quantitative trait locus. We also identified known candidate genes such as BMPR1B, MSRB3, and three genes (KIT, MC1R, and FRY) that influence lambing percentage, ear size and coat phenotypes, respectively.

Conclusions

Based on the results presented here, we propose that Chinese native sheep can be divided into two genetic groups: the thin type (Tibetan group), and the fat type (Mongolian and Kazakh group). We also identified important genes that drive valuable phenotypes in Chinese indigenous sheep, especially PDGFD, which may influence fat deposition in fat type sheep.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1384-9) contains supplementary material, which is available to authorized users.     

Effect of termite mound material on the physical properties of sandy soil and on the growth characteristics of tomato (Solanum lycopersicum L.) in semi-arid Niger

This investigation assessed the effects of termite mound material (TMM) on the physical properties of sandy soil and on tomato (Solanum lycopersicum L.) growth characteristics and water use efficiency. TMM combined with organic manure, TMM combined with rice straw mulching and organic manure, organic manure alone (OM) and unamended (T0) were the treatments used. Results showed that soil treated with TMM had more clay sized particles and organic carbon content than T0 and OM. In TMM-treated soil, more water was being retained at both field capacity and permanent wilting point. The application of TMM did not affect the amount of plant available water. Saturated hydraulic conductivity also remained unaffected by the TMM application, but increased with the organic matter treatment. Tomatoes grown in TMM amended soils had greater plant height and more leaves, fruit and biomass. No specific rate of TMM application was better for all parameters being assessed. The amount of water used by the tomatoes was significantly correlated (P?<?0.01) with fresh fruit yield (r?=?0.82), leaf area index (r?=?0.82) and total dry matter production (r?=?0.68). While TMM did not specifically affect plant water-use efficiency, this parameter was generally improved in amended soils.     

Genetic Differentiation of the Daurian Ground Squirrel <Emphasis Type="Italic">Spermophilus dauricus</Emphasis> Brandt, 1843 according to Variability of the Mitochondrial DNA Control Region

Nucleotide sequences of the mtDNA control region were studied in 64 Daurian ground squirrels of the Spermophilus dauricus dauricus subspecies from 20 localities from the territory of Mongolia and Transbaikalia of the Russian Federation. A large number of slightly different haplotypes were detected. It was found that genetic polymorphism is not associated with geographical variability. It seems that the Kherlen River is not an ecological and geographical barrier for Daurian ground squirrels, while an exchange between Mongolian and Chinese populations probably occurs within the southwest end of the Greater Khingan Range. By comparative analysis of a number of molecular genetic markers, it was found that the mitochondrial genome numbered KR534854 (GenBank NCBI) belongs not to S. dauricus, but to one of the members of the Sciurus genus.     

荒漠破碎化生境中长爪沙鼠集合种群野外验证研究

近年来,人类活动和自然干扰,导致内蒙古阿拉善荒漠区生境的破碎化,出现了长爪沙鼠在不同斑块间的不连续分布,每一斑块内可能存在一个局域种群,而集合种群建立的前提条件,是局域种群斑块状分布在离散的栖息地环境中。2002~2012年每年的4~10月,在阿拉善荒漠区禁牧、轮牧、过牧和开垦4种人为不同利用方式形成的生境斑块中,采用标志重捕法对长爪沙鼠（Meriones unguiculatus）种群进行定点监测。通过分析长爪沙鼠种群动态,计算各局域种群的灭绝风险,利用Spearman秩相关系数检验种群动态的空间同步性,同时以种群周转率对长爪沙鼠扩散能力进行评估,以检验阿拉善荒漠区长爪沙鼠种群空间结构是否具有经典集合种群的功能。结果表明：（1） 不同生境斑块可被长爪沙鼠局域种群占据,11年间捕获长爪沙鼠2~7次不等;（2） 长爪沙鼠所有局域种群均具有灭绝风险,在轮牧区和禁牧区灭绝率高达1.000 0,开垦区灭绝率最低,也达到0.333 4,而本研究期间最大局域种群（2008年过牧区,26只/hm²）,在2010年发生了局域灭绝;（3） 不同生境斑块间没有明显的空间隔离而阻碍局域种群的重新建立,长爪沙鼠扩散能力较强,绝大部分月份的种群周转率在50.0%以上,特别是周转率达到100.0%的月份较多;（4） 不同生境斑块间仅轮牧区和禁牧区中长爪沙鼠种群密度显著正相关（P<0.05）,而其他生境斑块间相关性均不显著（P >0.05）,长爪沙鼠局域种群整体显示出明显的非同步空间动态。阿拉善荒漠区长爪沙鼠种群满足作为经典集合种群物种区域续存的4个条件,具有作为研究小哺乳动物集合种群的潜在价值。     

Increasing nitrogen deposition enhances post-drought recovery of grassland productivity in the Mongolian steppe

Arid regions are prone to drought because annual rainfall accumulation depends on a few rainfall events. Natural plant communities are damaged by drought, but atmospheric nitrogen (N) deposition may enhance the recovery of plant productivity after drought. Here, we investigated the effect of increasing N deposition on post-drought recovery of grassland productivity in the Mongolian steppe, and we examined the influence of grazing in this recovery. We added different amounts of N to a Mongolian grassland during two sequential drought years (2006 and 2007) and the subsequent 3 years of normal rainfall (2008–2010) under grazed and nongrazed conditions. Aboveground biomass and number of shoots were surveyed annually for each species. Nitrogen addition increased grassland productivity after drought irrespective of the grazing regime. The increase in grassland productivity was associated with an increase in the size of an annual, Salsola collina, under grazed conditions, and with an increase in shoot emergence of a perennial, Artemisia adamsii, under nongrazed conditions. The addition of low N content simulating N deposition around the study area by the year 2050 did not significantly increase grassland productivity. Our results suggest that increasing N deposition can enhance grassland recovery after a drought even in arid environments, such as the Mongolian steppe. This enhancement may be accompanied by a loss of grassland quality caused by an increase in the unpalatable species A. adamsii and largely depends on future human activities and the consequent deposition of N in Mongolia.     

Fragmentation of the Habitat of Wild Ungulates by Anthropogenic Barriers in Mongolia

Habitat loss and habitat fragmentation caused by anthropogenic activities are the main factors that constrain long-distance movement of ungulates. Mongolian gazelles (Procapra gutturosa) and Asiatic wild asses (Equus hemionus) in Mongolia are facing habitat fragmentation and loss. To better understand how their movements respond to potential anthropogenic and natural barriers, we tracked 24 Mongolian gazelles and 12 wild asses near the Ulaanbaatar–Beijing Railroad and the fenced international border between Mongolia and China between 2002 and 2012. None of the tracked gazelles crossed the railroad, even though gazelles were captured on both sides of the tracks at the start of the study. Similarly, we did not observe cross-border movements between Mongolia and China for either species, even though some animals used areas adjacent to the border. The both species used close areas to the anthropogenic barriers more frequently during winter than summer. These results suggest strong impacts by the artificial barriers. The construction of new railroads and roads to permit mining and other resource development therefore creates the threat of further habitat fragmentation, because the planned routes will divide the remaining non-fragmented habitats of the ungulates into smaller pieces. To conserve long-distance movement of the ungulates in this area, it will be necessary to remove or mitigate the barrier effects of the existing and planned roads and railroads and to adopt a landscape-level approach to allow access by ungulates to wide ranges throughout their distribution.     

Discussion of the Early Devonian rhynchonellid brachiopod genus Borealirhynchia Su, 1976

The Early Devonian brachiopod genus Borealirhynchia was established by Su, 1976. Phylum Brachiopoda (Cambrian to Devonian). In: Paleontological Atlas of North China, Inner Mongolia Volume 1. Geological Publishing House Beijing, pp. 155-227 (in Chinese). It has not been previously described in detail, nor have transverse serial sections of the internal features of Borealirhynchia delerensis, the type species, been published. In this paper Borealirhynchia, along with a few species previously assigned to it, is analysed and discussed. Detailed transverse serial sections of the internal features of B.? lata Su, 1976, are provided, based on well-preserved specimens collected from the Lower Devonian strata of Dong Ujimqin Qi, northeastern Inner Mongolia. Borealirhynchia? gigantea Su, 1976 and Latonotoechia multicosta Su, 1976 are considered to be synonyms of B.? lata Su with the same external and internal characters present in all three species. Some Lower Devonian strata, in which Borealirhynchia was found and reported, from Dong Ujimqin Qi, northeastern Inner Mongolia, are fully described.     

Association of ADAM33 gene polymorphisms with asthma in Mongolian and Han groups in Inner Mongolia

Polymorphisms in the gene encoding for A disintegrin and metalloprotease 33 (ADAM33) are closely associated with the risk of bronchial asthma attacks in different populations. We collected blood samples from 248 asthma patients – 130 of the Han ethnic group and 118 of the Mongolian ethnic group – living in the Inner Mongolia region of China, and analyzed the single nuclear polymorphisms (SNPs) of the T1, T2 and V4 loci of the ADAM33 gene using PCR-RFLP (restriction fragment length polymorphism). In addition, we also tested 256 healthy controls (134 and 122 from the Han and Mongolian ethnic groups respectively) for the same SNPs. Three genotypes of the T1, T2 and V4 loci were predominantly detected: while polymorphisms in the T1 locus were significantly associated with asthma risk in both Mongolian and Han ethnicities (P?<?0.05, 1P?<?0.05), that in the V4 locus were relevant only in the Mongolian patients (P?<?0.05, 1P?>?0.05). In contrast, polymorphisms in the T2 locus showed no significant association with asthma risk in either ethnic group (P?>?0.05, 1P?>?0.05).     

Is literature data useful for identifying enzyme catalysts for new substrates? A case study on reduction of 1-aryl-2-alkanoates

The use of literature data to identify catalysts for a novel transformation is a commonly used approach. Herein, we have evaluated if this is a viable strategy in enzyme catalysis, using asymmetric reduction of 1-aryl-2-alkanoates as a model system. The study, which includes data from 24 ketone substrates and 108 enzymes, clearly identifies pitfalls with this approach, but anyhow shows that literature data is highly useful for identification of enantioselective catalysts. By combining data for selectivity and rate useful catalyst for converting different substrates to their corresponding (R)- and (S)-enantiomers are highlighted.     

Comparable High Rates of Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli in Birds of Prey from Germany and Mongolia

Frequent contact with human waste and liquid manure from intensive livestock breeding, and the increased loads of antibiotic-resistant bacteria that result, are believed to be responsible for the high carriage rates of ESBL-producing E. coli found in birds of prey (raptors) in Central Europe. To test this hypothesis against the influence of avian migration, we initiated a comparative analysis of faecal samples from wild birds found in Saxony-Anhalt in Germany and the Gobi-Desert in Mongolia, regions of dissimilar human and livestock population characteristics and agricultural practices. We sampled a total of 281 wild birds, mostly raptors with primarily north-to-south migration routes. We determined antimicrobial resistance, focusing on ESBL production, and unravelled the phylogenetic and clonal relatedness of identified ESBL-producing E. coli isolates using multi-locus sequence typing (MLST) and macrorestriction analyses. Surprisingly, the overall carriage rates (approximately 5%) and the proportion of ESBL-producers among E. coli (Germany: 13.8%, Mongolia: 10.8%) were similar in both regions. Whereas bla _CTX-M-1 predominated among German isolates (100%), bla _CTX-M-9 was the most prevalent in Mongolian isolates (75%). We identified sequence types (STs) that are well known in human and veterinary clinical ESBL-producing E. coli (ST12, ST117, ST167, ST648) and observed clonal relatedness between a Mongolian avian ESBL-E. coli (ST167) and a clinical isolate of the same ST that originated in a hospitalised patient in Europe. Our data suggest the influence of avian migratory species in the transmission of ESBL-producing E. coli and challenge the prevailing assumption that reducing human influence alone invariably leads to lower rates of antimicrobial resistance.