高效降解环己酮的无色杆菌JDM-3-03株的分离和鉴定

目的：分离、鉴定高耐受和高效降解环己酮的菌株。方法：从采自岳阳巴陵石化公司环己酮生产车间总出水口的污泥中,通过逐步驯化筛选环己酮降解菌株;通过形态观察、生理生化特征检测和基于16S rRNA基因序列的系统发育分析对分离到的菌株进行初步鉴定。结果：分离得到一株环己酮降解菌株JDM-3-03,初步鉴定其为无色杆菌Achromobacter insolitus的一个菌株;该菌能以环己酮为惟一碳源,且能耐受5000mg/L的环己酮;当环己酮的质量浓度为2000mg/L时,在温度为30℃、转速为150r/min的条件下,72h内该菌株对环己酮的降解率达到90.17%。结论：菌株JDM-3-03是一株可高效降解环己酮的无色杆菌。     

一株纤维素降解细菌的筛选、鉴定及产酶条件分析

目的筛选高活性的纤维素降解细菌,并进行初步鉴定和产纤维素酶条件分析。方法采集吉首旗帜山松树林的土壤样品,通过富集培养和刚果红平板染色法筛选分离纤维素降解细菌;通过形态观察、生理生化特性检测和基于16S rRNA基因序列的系统发育分析对分离的菌株进行初步鉴定。利用单因素实验对产纤维素酶条件进行优化。结果分离获得1株高活性纤维素降解细菌JDM11,初步鉴定其为Bacillus velezensis;菌株JMD11产纤维素酶最佳培养温度、最适初始pH和培养时间分别为28℃、7.0～7.5和32h,在该条件下其滤纸酶(FPase)和羧甲基纤维素酶(CMCase)活力分别为260.32U/ml和651.75U/ml。结论菌株JDM11是1株高活性纤维素降解的Bacillus velezensis。     

美洲大蠊成虫肠道可培养细菌多样性研究

【目的】了解美洲大蠊成虫肠道可培养细菌的多样性。【方法】运用纯培养法、数值分类和16S rRNA基因序列的系统发育分析对样品中可培养细菌多样性进行研究。【结果】从NA培养基中分离得到54株细菌,根据形态观察和部分生理生化特性,选取32个代表性菌株进行16S rRNA基因序列的系统发育多样性分析。结果表明,数值分类中的代表菌株在82%相似水平上可分为12个表观群;这些分离菌株代表20个物种,属于4个大的系统发育类群(Proteobacteria,Bacteroidetes,Firmicutes,Actinobacteria)的10个科、15个属。多数菌株属于Proteobacteria门(15株,占46.9%)和Bacteroidetes门(10株,占31.3%)。【结论】美洲大蠊成虫肠道内存在较为丰富的细菌多样性。     

一株菊酯类农药降解菌的分离鉴定及其降解酶基因的克隆

摘要：【目的】筛选分离高效降解菊酯类农药的光合细菌,研究其降解特性,并对该菌株中降解酶基因进行克隆与初步分析。【方法】根据分离菌株的细胞形态结构、活细胞光吸收特征、生理生化特征及其16S rDNA序列系统发育分析鉴定降解菌,气相色谱法测定该菌株降解菊酯类农药的能力,PCR方法克隆降解酶基因。【结果】菌株PSB07-21属红假单胞菌属（Rhodopseudomonas sp.）,其降解最佳条件为3000 lx、35℃、pH 7,在此条件下培养15 d对600 mg/L甲氰菊酯、氯氰菊酯、联苯菊酯降解率分别为     

全氟辛烷磺酸降解菌的分离与鉴定

目的筛选和分离降解全氟辛烷磺酸(PFOS)的细菌,并进行初步鉴定和降解效率分析。方法采集全氟化工厂周边土壤,利用PFOS为唯一碳源的无机盐培养基进行驯化和富集培养,分离降解PFOS的细菌;通过形态观察、生理生化特性检测和基于16SrRNA基因序列的系统发育分析对分离菌株进行鉴定;采用GC-MS检测其降解PFOS的能力。结果分离获得3株能降解PFOS的细菌YSB1、YSB2和YSB3,初步鉴定分属于鞘酯菌属(Sphingobiumsp.)、中华根瘤菌属(Sinorhizobiumsp.)和苍白杆菌属(Ochrobactrumsp.)。菌株YSB1、YSB2和YSB3在以PFOS为唯一碳源生长的无机盐培养基中生长良好,其对PFOS最大降解率分别为18.4%、10.1%和14.1%。结论自然界存在较丰富的降解持久性有机污染物PFOS的微生物资源。     

大西洋洋中脊深海多环芳烃降解菌群的优势菌分析

摘要：【目的】为了分析大西洋洋中脊深海海水及表层沉积物中多环芳烃(PAHs)降解菌群中的优势菌。【方法】采用富集培养法和平板涂布法从深海样品中分离可培养细菌及PAHs降解菌。通过16S rRNA基因测序完成系统发育分析。采用变性梯度凝胶电泳（DGGE）及DNA测序分析降解菌群中的优势菌。【结果】总共分离到16株细菌,包括一株PAHs降解菌Novosphingobium sp. 4D。系统发育分析发现,可培养细菌中两个最大的类群分别与Alcanivorax dieselolei NO1A（5/16）和Tistrella mobilis TISTR 1108T（5/16）亲缘关系最近。DGGE结果表明,在菌群MC2D中菌株4L（以及4M、4N, Alcanivorax dieselolei NO1A, 99.21％）、4D（Novosphingobium pentaromativorans US6-1T,97.07％）和4B（以及4E、4H、4K,Tistrella mobilis TISTR 1108T,＞99％）是降解菌群中的优势菌。而降解菌群MC3CO中的优势菌是菌株5C（以及5H,Alcanivorax dieselolei NO1A,＞99％）、条带5-8代表的未培养菌株（Novosphingobium aromaticivorans DSM 12444T,99.41%）、5J（Tistrella mobilis TISTR 1108T,99.52％）和5F（以及5G,Thalassospira lucentensis DSM 14000T,＜97％）。【结论】本研究发现在大西洋洋中脊深海海水及表层沉积物中Alcanivorax、Novosphingobium、Thalassospira、Tistrella属的细菌是PAHs降解菌群中的优势菌,其中的主要降解菌是Novosphingobium属的细菌。     

降解菜籽饼粗蛋白耐盐菌的筛选、鉴定及固体发酵的初步研究

从保存6个月含菜籽饼的堆肥样品中筛选到3株耐盐菌株A2、A4、A7,这些菌株能以菜籽饼为氮源生长,最高耐盐浓度达到10%,经分子生物学及系统发育分析,A2、A4为解淀粉芽孢杆菌,A7为栗褐芽孢杆菌,通过单一菌株固体发酵菜籽饼试验,这些细菌均对菜籽饼表现出了一定的降解能力。     

天山冻土产低温脂肪酶菌株的筛选及其多样性分析

【目的】通过天山冻土细菌的分离和产低温脂肪酶菌株的筛选,了解天山冻土微生物的物种多样性和产脂肪酶菌株的系统发育多样性,为高效低温脂肪酶生物技术奠定基础。【方法】采用稀浓度的R2A、TSB平板涂布分离天山冻土中可培养细菌,通过选择性培养基筛选产低温脂肪酶的菌株。采用细菌常规生理生化实验、最适生长温度、耐盐性、产酶性能对分离菌株的生理学进行研究,通过16S rRNA基因序列分析确定产脂肪酶菌种的系统进化地位,通过BOX-PCR指纹技术对16S rRNA基因高度同源性的菌株进一步区分。【结果】分离筛选到78株可培养低温菌,选择培养基显示有17株可产低温脂肪酶,其中8株在两种选择培养基中均可产脂肪酶和酯酶。17株产酶菌分别隶属于5个系统发育类群、6个属,其中假单胞菌属(Pseudomonas)占大多数(58.9%)。【结论】天山冻土中产低温脂肪酶的细菌具有较丰富的系统发育多样性,依据生长温度,均属于耐冷菌。     

二氯喹啉酸降解菌MC-10的筛选、鉴定及其降解特性

【目的】为治理稻-烟轮作田块上茬土壤中二氯喹啉酸残留问题,筛选高效降解细菌菌株。【方法】通过富集培养和选择培养,从常年施用二氯喹啉酸的水稻田中筛选可以降解二氯喹啉酸的细菌;对其进行形态学观察、生理生化特征测定和16S r DNA序列系统发育鉴定。【结果】分离的降解菌株MC-10被鉴定为节杆属菌株(Arthrobacter sp.)。菌株MC-10在5%接种量p H 7、28℃时,对初始浓度为20 mg/L二氯喹啉酸7 d可降解90%以上。该降解菌的最佳降解条件为p H 7、30℃,二氯喹啉酸初始浓度在1-100mg/L间均有良好的降解效果;菌株MC-10在土壤中对二氯喹啉酸同样有良好的降解效果,温室内7 d对二氯喹啉酸污染土壤的修复率可达70%。【结论】菌株MC-10在二氯喹啉酸污染土壤和水质治理中具有潜在的应用前景。     

一株菲降解细菌的分离鉴定及其特性

通过选择性富集培养,从沈抚灌区石油污染土壤中分离到1株菲降解细菌.试验证明该菌株能以菲为唯一碳源和能源生长.经形态学、生理生化鉴定和16S rRNA基因序列比对分析,确定该菌株属于不动杆菌属,命名为Acinetobacter sp. L2. 系统发育进化分析发现,L2菌株与Acinetobacter sp. DG880［AY258108］亲源关系最近.L2菌株培养7 d后对菲的降解率达96.3%.邻苯二酚2,3-双加氧酶活力测定表明,L2菌株可能含有菲降解基因.     

岱山盐场可培养嗜盐菌的多样性及其产酶活性筛选

从岱山盐场采集样品,利用选择性培养基分离培养嗜盐菌,对盐田环境中可培养嗜盐菌的多样性及产酶活性进行研究.共分离得到181株嗜盐菌菌株,通过真细菌和古生菌两对通用引物扩增其16S rRNA 基因,并采用限制性内切酶Hinf I进行ARDRA(amplified rDNA restriction analysis)多态性分析,共分为21个不同的操作分类单元(operation taxonomy units, OTUs),其中嗜盐细菌有12个OTUs,嗜盐古菌有9个OTUs.选取具有不同酶切图谱的代表菌株进行克隆测序,BLAST 比对及系统发育分析将嗜盐细菌归于7个属,其中嗜盐单胞菌属(Halomonas)的菌株数占优势,是嗜盐细菌总数的46.8%;嗜盐古菌归于4个属,盐盒菌属(Haloarcula)的菌株数占优势,是嗜盐古菌总数的49.1%.对分离菌株的产酶活性进行检测表明,岱山盐田环境蕴含丰富的产淀粉酶、蛋白酶和脂肪酶等生物活性酶的嗜盐菌, 其中盐盒菌属产酶菌株数最丰富.研究结果表明,岱山盐田环境中具有较为丰富的嗜盐菌多样性,是筛选产酶菌株的重要资源库.     

Studies on the resistance of activated sludge bacteria to high concentrations of methanol, butanol, glycol, cyclohexanone and cyclohexylamine

The resistance of bacterial strains isolated from activated sludge purifying petrochemical wastewaters to high concentrations of methanol, butanol, glycol, cyclohexanone and cyclohexylamine was examined. The strains were found to be resistant to up to 5000 mg/l of methanol, butanol and glycol. Cyclohexylamine in concentration 1500 mg/l completely inhibited the growth of all examined strains whereas cyclohexanone even at concentration 4500 mg/l eliminated only about half of the isolated strains. The highest resistance to cyclohexane derivatives was shown by bacteria belonging to Pseudomonas III. None of the studied strains was, however, able to utilize cyclohexanone and cyclohexylamine as a source of barbon and energy.     

Polyphasic classification of 0.2 microm filterable bacteria from the western Mediterranean Sea

The 0.2 microm filtration of sea water samples from the Mediterranean Sea (Bay of Calvi, Corsica), collected from 10 m and 35 m depth led to the isolation of several gram-negative bacterial strains able to grow on full-strength media as well as on diluted media. The analysis of the 16S rRNA gene sequences and estimation of the phylogenetic relationships of these facultative oligotrophic bacteria indicated that they grouped into two phylogenetic branches. The strains RE10F/2, RE10F/5 (10 m depth samples) and RE35/F12 (35 m depth samples) were assigned to the gamma-subclass, while RE35F/1 (35m depth sample) was assigned to the alpha-4-subclass of the Proteobacteria. The strains RE10/F2 and RE10/F5 were most closely related to species and strains of the Pseudoalteromonas group, whereas the strain RE35F/12 placed adjacent to the family Vibrionaceae. The phylogenetic analysis of strain RE35F/1 revealed that this bacterium clusters with marine strains and species of the aerobic anoxygenic phototrophic bacteria Erythrobacter as well as Erythromicrobium and more distantly to Sphingomonas spp. Supplementary to those genotypic classifications the chemotaxonomic signatures including the major respiratory lipoquinone systems, the cellular fatty acid compositions as well as the polyamine contents of the bacteria were investigated. The isolated organisms displayed differences in their physiological and biochemical properties to already described strains belonging to the same genera or families, as revealed by the comparative 16S rRNA analysis. Despite the fact that these bacteria were isolated from a 0.2 microm filtrate, the cultured organisms which were all rod-shaped, displayed width dimensions ranging from 0.4 up to 0.7 microm, indicating that these bacteria were starvation forms at the time of isolation and not ultramicrobacteria as defined by Torella and Morita (1981) or by Schut et al. (1993). Because our isolated strains represent potentially new taxa, this first investigation on 0.2 pm filterable bacteria from the Western Mediterranean Sea supports the hypothesis that this bacterial fraction contributes to the diversity of marine bacteria.     

宁夏黄土高原马铃薯连作栽培对土壤可培养细菌遗传多样性的影响

采用平板培养、BOXAIR-PCR和16S rDNA RFLP技术对宁夏黄土高原马铃薯连作栽培土壤可培养细菌遗传多样性进行研究。结果表明,4个连作年限2个生育期8份土样共分离到91株细菌菌株, BOXAIR-PCR分析发现,91株细菌菌株的遗传相似系数为0.531～0.939,相同连作年限不同生育期根际土细菌菌群分布不同,不同连作年限同一生育期根际土细菌菌群的分布也不同,随着连作年限增加,可培养细菌遗传多样性呈现下降趋势;结合16S rDNA 的序列分析,从91株菌株中筛选出的41个代表菌株可分为23个物种,分属于细菌域的12个属,其中,芽孢杆菌属（Bacillus）占同一连作年限菌株数的53.6%。连作导致土壤细菌菌群结构发生变化,出现各自特有的菌属。系统发育分析表明,23个细菌物种分布于6个系统发育群。     

新疆伊犁地区原牛乳中乳酸菌的多样性分析

【目的】对新疆伊犁地区原牛奶中乳酸细菌的遗传多样性进行分析。【方法】采用菌落培养、Rep-PCR(Repetitive genomic fingerprinting)指纹图谱和16S r RNA基因序列分析相结合的方法研究牛乳内乳酸菌的遗传多样性。【结果】从5份原牛乳中分离出乳酸菌29株,基因序列分析和系统进化分析显示29株乳酸菌隶属于5个属,分别为:Lactococcus、Lactobacillus、Leuconostoc、Pediococcus和Enterococcus。优势属为Leuconostoc(27.6%),其次为Lactococcus(24.0%)。【结论】新疆伊犁地区原牛乳中乳酸菌多样性丰富,为开发新疆地区益生乳酸菌提供了丰富的活性资源。     

小蓬竹根际土壤微生物及内生真菌多样性分析

为了解喀斯特典型物种-小蓬竹根际土壤微生物及不同部位内生真菌多样性,采用沿等高线等距离取样法采集小蓬竹根际土壤及健康植株,通过可培养对根际土微生物及内生菌进行分离,利用分子技术对其进行鉴定,根据鉴定结果构建系统发育树,并计算小蓬竹根际土壤微生物和根茎叶内生真菌多样性。结果如下：（1）共从根际土壤、根、茎、叶分离得到139个真菌菌株,隶属于27属,其中根际土壤分离得到34个真菌菌株隶属于12属,根部分离得到的63个内生真菌菌株隶属于17个属,茎部分离得到的14个内生真菌菌株隶属于8个属,叶部分离得到28个内生真菌菌株隶属于9个属;（2）根际土壤共分离得到41株细菌菌株,隶属于7个属26个种,20株放线菌菌株,隶属于1属15种;从Shannon-Wiener多样性指数、均匀度指数、Simpson指数排序来看,真菌主要表现为根 > 根际土壤 > 茎 > 叶,细菌和放线菌多样性均较低。（3）按层次聚类分析可分别将真菌、细菌、放线菌聚为3支。小蓬竹根际土壤、根、茎和叶具有丰富的微生物多样性,不同部位菌群组成存在差异性（P<0.05）,且存在以假单胞菌属、芽孢杆菌属等为优势属的抗盐耐旱菌群,这有助于揭示小蓬竹对喀斯特生境的适应性,以及为微生物-植物群落之间相互关系提供一定基础数据,为后期寻找小蓬竹相关耐性功能菌奠定基础。     

Geographical distribution of milky disease bacteria in the eastern United States based on phylogeny

A phylogenetic grouping of 48 different isolates of milky disease bacteria isolated in the United States was determined using genomic RFLP analysis and 16S rDNA sequence comparison. A clear distinction between Paenibacillus popilliae isolates and Paenibacillus lentimorbus isolates was evident from the results of each procedure. The P. popilliae isolates segregated into two phylogenetic groups and the P. lentimorbus isolates segregated into three phylogenetic groups. In the United States, P. popilliae group 1 was generally isolated from insects collected west of the Appalachian Mountains. P. popilliae group 2 was only isolated from insects collected east of the Appalachian Mountains. P. lentimorbus groups 1 and 2 were obtained from insects collected west and south of the Appalachians. P. lentimorbus group 3 was identified in insects collected east of the mountains. From five different locations in Connecticut, 12 milky disease bacterial isolates were classified as P. popilliae and three were classified as P. lentimorbus. Except for one isolate, all P. popilliae isolates were of phylogenetic group 2. The three P. lentimorbus strains were isolated from diseased insects that had been collected from a localized area in the state. These three strains formed a separate phylogenetic grouping (i.e., group 3) of P. lentimorbus and, based on 16S rDNA sequence comparisons, were most similar to the newly identified P. lentimorbus Semadara strain recently isolated in Japan. All milky disease bacteria that had been isolated from commercially available insecticide preparations were identified as P. popilliae group 1.     

巴里坤湖和玛纳斯湖嗜盐菌的分离及功能酶的筛选

目的:了解新疆巴里坤湖与马纳斯湖中嗜盐菌及功能酶的多样性。方法:从两湖中采集水样进行菌种分离,采用PCR方法扩增出其16S rRNA基因(16S rDNA),并测定了基因的序列。对分离菌株进行了蛋白酶、淀粉酶、酯酶、脂肪酶、以及纤维素酶的筛选。结果:从两湖水样共分离得到51株嗜盐菌。基于16SrDNA序列的同源性比较和系统发育学分析,发现从两湖分离获得的中度嗜盐菌分别属于Planococcaceae、Bacillacea、Staphylococcus、Halomonadaceae、Salicolaceae以及Pseudomonadacaeae 6个属。分离得到的极端嗜盐古菌属于Halobacteriaceae属。功能酶筛选结果表明产蛋白酶的嗜盐菌共有15株,产酯酶的共有23株,产淀粉酶的共有8株,未获得产脂肪酶和纤维素酶的嗜盐菌。结论:新疆巴里坤湖和马纳斯湖中有丰富的嗜盐微生物资源及酶资源,有重要的研究意义和应用前景。     

江苏盐城盐场中度嗜盐菌的分离与鉴定

采用高盐的牛肉膏蛋白胨培养基(盐浓度为8%NaCl),研究江苏省盐城市盐场土壤里中度嗜盐菌的分布情况及种群特征。从盐城市的射阳、新滩、灌东三处盐场土壤中共采集和分离得到13株中度嗜盐菌。通过形态观察、生理生化分析、16S rRNA序列分析和系统进化分析等方法进行初步鉴定,结果表明:分离到的中度嗜盐菌分属3个属,Virgibacillus属4株、Halomonas属7株和Marinobacter属2株。研究结果揭示盐城市的盐场存在较为丰富的中度嗜盐菌,具有较高的研究和利用价值。