Species distribution models for predicting the habitat suitability of Chinese fire‐bellied newt Cynops orientalis under climate change

Climate change influences species geographical distribution and diversity pattern. The Chinese fire‐bellied newt (Cynops orientalis) is an endemic species distributed in East‐central China, which has been classified as near‐threatened species recently due to habitat destruction and degradation and illegal trade in the domestic and international pet markets. So far, little is known about the spatial distribution of the species. Based on bioclimatic data of the current and future climate projections, we modeled the change in suitable habitat for C. orientalis by ten algorithms, evaluated the importance of environmental factors in shaping their distribution, and identified distribution shifts under climate change scenarios. In this study, 46 records of C. orientalis from East China and 8 bioclimatic variables were used. Among the ten modeling algorithms, four (GAM, GBM, Maxent, and RF) were selected according to their predictive abilities. The current habitat suitability showed that C. orientalis had a relatively wide but fragmented distribution, and it encompassed 41,862 km². The models suggested that precipitation of warmest quarter (bio18) and mean temperature of wettest quarter (bio6) had the highest contribution to the model. This study revealed that C. orientalis is sensitive to climate change, which will lead to a large range shift. The projected spatial and temporal pattern of range shifts for C. orientalis should provide a useful reference for implementing long‐term conservation and management strategies for amphibians in East China.     

Regional Insect Inventories Require Long Time,Extensive Spatial Sampling and Good Will

Understanding how faunistic knowledge develops is of paramount importance to correctly evaluate completeness of insect inventories and to plan future research at regional scale, yet this is an unexplored issue. Aim of this paper was to investigate the processes that lead to a complete species inventory at a regional level for a beetle family. The tenebionid beetles of Latium region (Italy) were analysed as a case study representative of general situations. A comprehensive faunistic database including 3,561 records spanning from 1871 to 2010 was realized examining 25,349 museum specimens and published data. Accumulation curves and non-parametric estimators of species richness were applied to model increase in faunistic knowledge over time, through space and by collectors’ number. Long time, large spatial extent and contribution of many collectors were needed to obtain a reliable species inventory. Massive sampling was not effective in recovering more species. Amateur naturalists (here called parafaunists) were more efficient collectors than professional entomologists. Museum materials collected by parafaunists over long periods and large spatial extent resulted to be a cost effective source of faunistic information with small number of collected individuals. It is therefore important to valuate and facilitate the work of parafaunists as already suggested for parataxonomists. By contrast, massive collections by standardized techniques for ecological research seem to be of scarce utility in improving faunistic knowledge, but their value for faunistic studies may be enhanced if they are conducted in poorly surveyed areas.     

Checklist of tortoise beetles (Coleoptera,Chrysomelidae, Cassidinae) from Colombia with new data and description of a new species

A new tortoise beetle species, Cyrtonota abrili, is described from the Antioquia and Caldas departments in Colombia. New faunistic data are provided for 87 species, including 16 new additions to the country’s fauna. A checklist of the known 238 species of tortoise beetles recorded from Colombia is given.     

The Diversity of Flower Flies (Diptera: Syrphidae) in Colombia and Their Neotropical Distribution

In Colombia, like most Neotropical countries, faunistic studies on flower flies have been occasional and most of them have been primarily focused on taxonomy. Colombia is the second-most species-rich country in flower fly diversity in the Neotropics after Brazil, and has one of the highest numbers of species per unit area (2.49 per 10,000?km²), based on a review of literature and national collections. Including new data presented here, a total of 47 genera and 300 species are recorded in Colombia. The genera Scaeva Fabricius and Lycastrirhyncha Bigot, as well as 101 species are recorded here for the first time. The altitudinal range and the distribution of the flower fly genera in Colombia are presented. A preliminary comparison of the fauna of Colombia with that of other Neotropical countries is given. A historical perspective is also provided in order to illustrate how Colombian Syrphidae knowledge has progressed over the last 168?years. Information presented here will be useful for ongoing and future biodiversity research as well as conservation projects on Syrphidae in the Neotropical region.     

细花萤科分类概述与中国种类名录（鞘翅目：郭公总科）

介绍了细花萤科的识别特征,总结了该科分类历史,提供了属级检索表,编制了中国已知种类名录。基于标本检视信息,对一些物种地理分布地进行了补充,包括 Lobonyx guerryi (Pic, 1920)、Prionocerus bicolor Redtenbacher, 1868、P. coeruleipennis Perty,1831、Idgia deusta Fairmaire,1878和I. flavirostris Pascoe,1860。     

Environmental correlates of species richness of European springtails (Hexapoda: Collembola)

Our knowledge about environmental correlates of the spatial distribution of animal species stems mostly from the study of well known vertebrate and a few invertebrate taxa. The poor spatial resolution of faunistic data and undersampling prohibit detailed spatial modeling for the vast majority of arthropods. However, many such models are necessary for a comparative approach to the impact of environmental factors on the spatial distribution of species of different taxa. Here we use recent compilations of species richness of 35 European countries and larger islands and linear spatial autocorrelation modeling to infer the influence of area and environmental variables on the number of springtail (Collembola) species in Europe. We show that area, winter length and annual temperature difference are major predictors of species richness. We also detected a significant negative longitudinal gradient in the number of springtail species towards Eastern Europe that might be caused by postglacial colonization. In turn, environmental heterogeneity and vascular plant species richness did not significantly contribute to model performance. Contrary to theoretical expectations, climate and longitude corrected species–area relationships of Collembola did not significantly differ between islands and mainlands.     

A catalogue of Lithuanian beetles (Insecta, Coleoptera)

This paper presents the first complete and updated list of all 3597 species of beetles (Insecta: Coleoptera) belonging to 92 familiesfound and published in Lithuania until 2011, with comments also provided on the main systematic and nomenclatural changes since the last monographic treatment in two volumes (Pileckis and Monsevičius 1995, 1997). The introductory section provides a general overview of the main features of the territory of Lithuania, the origins and formation of the beetle fauna and their conservation, the faunistic investigations in Lithuania to date revealing the most important stages of the faunistic research process with reference to the most prominent scientists, an overview of their work, and their contribution to Lithuanian coleopteran faunal research.Species recorded in Lithuania by some authors without reliable evidence and requiring further confirmation with new data are presented in a separate list, consisting of 183 species. For the first time, analysis of errors in works of Lithuanian authors concerning data on coleopteran fauna has been conducted and these errors have been corrected. All available published and Internet sources on beetles found in Lithuania have been considered in the current study. Over 630 literature sources on species composition of beetles, their distribution in Lithuania and neighbouring countries, and taxonomic revisions and changes are reviewed and cited. An alphabetical list of these literature sources is presented. After revision of public beetle collections in Lithuania, the authors propose to remove 43 species from the beetle species list of the country on the grounds, that they have been wrongly identified or published by mistake. For reasons of clarity, 19 previously noted but later excluded species are included in the current checklist with comments. Based on faunal data from neighbouring countries, species expected to occur in Lithuania are matnioned. In total 1390 species are attributed to this category and data on their distribution in neighbouring countries is presented. Completion of this study provides evidence that the Lithuanian coleopteran fauna has yet to be completely investigated and it is estimated that approximately 28 % of beetle species remain undiscovered in Lithuania. More than 85% of beetle species expected for Lithuania have been found in the following families: Cerylonidae, Geotrupidae, Haliplidae, Kateridae, Lycidae, Lucanidae, Mycetophagidae, Scarabaeidae and Silphidae. In families with few species such as Alexiidae, Boridae, Byturidae, Dascilidae, Drilidae, Eucinetidae, Lampyridae, Lymexilidae, Megalopodidae, Nemonychidae, Nosodendridae, Noteridae, Orsodacnidae, Pyrochroidae, Pythidae, Psephenidae, Rhysodidae, Sphaeritidae, Sphaeriusidae, Sphindidae, Stenotrahelidae and Trogidae, all possible species have already been discovered. However in some beetle families such as Aderidae, Bothrideridae, Eucnemidae, Laemoploeidae, Mordellidae, Ptiliidae, Scraptidae and Throscidae less than 50% of all possible species are known. At present the beetle species recorded in Lithuania belong to 92 families, with species from 9 other families such as Agyrtidae, Biphylidae, Deradontidae, Mycteridae, Ochodaeidae, Phleophilidae, Phloeostichidae, Prostomidae, Trachypachidae are expected to be found.A bibliography and a index of subfamily and genus levels are provided. The information published in the monograph will serve to further faunistic and distribution research of beetles and will help to avoid confusion in the identificatation of coleopteran fauna of Lithuania.     

First Record of the Subgenus <Emphasis Type="Italic">Empis</Emphasis> (<Emphasis Type="Italic">Planempis</Emphasis>) (Diptera,Empididae) from Middle Asia,with Description of a New Species

A new species of the subgenus Planempis Frey, 1953 (Diptera: Empididae), Empis (Planempis) gussakovskiisp. n., is described from Tajikistan, being the first record of the subgenus from Middle Asia. The relationships of the new species within the subgenus Planempis are shortly discussed. An updated check-list of Planempis species is provided.     

Description of a New Species of the Genus Macromotettixoides Zheng (Orthoptera: Tetrigoidea: Metrodorinae) from China

A new species, Macromotettixoides lativertex Deng et al n. sp. is described with detailed illustrations of external morphology. Comparison between the species M. lativertex n. sp. and allied species is compiled into a table for identification. The distribution and an updated identification key to all known species of the genus is given.     

Genetic Pool Information Reflects Highly Suitable Areas: The Case of Two Parapatric Endangered Species of Tuco-tucos (Rodentia: Ctenomiydae)

Conservation of small mammals requires knowledge of the genetically and ecologically meaningful spatial scales at which species respond to habitat modifications. Conservation strategies can be improved through the use of ecological niche models and genetic data to classify areas of high environmental suitability. In this study, we applied a Maxent model integrated with genetic information (nucleotide diversity, haplotype diversity and Fu''s Fs neutrality tests) to evaluate potential genetic pool populations with highly suitable areas for two parapatric endangered species of tuco-tucos (Ctenomys minutus and C. lami). Our results demonstrated that both species were largely influenced by vegetation and soil variables at a landscape scale and inhabit a highly specific niche. Ctenomys minutus was also influenced by the variable altitude; the species was associated with low altitudes (sea level). Our model of genetic data associated with environmental suitability indicate that the genetic pool data were associated with highly suitable areas for C. minutus. This pattern was not evident for C. lami, but this outcome could be a consequence of the restricted range of the species. The preservation of species requires not only detailed knowledge of their natural history and genetic structure but also information on the availability of suitable areas where species can survive, and such knowledge can aid significantly in conservation planning. This finding reinforces the use of these two techniques for planning conservation actions.     

The Tannea Blackwelder Species of Ecuador with Description of New Species (Coleoptera: Staphylinidae: Osoriinae)

Two new species of the genus Tannea Blackwelder from Ecuador, Tannea hermani n. sp. and Tannea bellavistae n. sp. are herein described, and a complete list of records of all Tannea species found in Ecuador is provided together with a key to the species. Additionally, the geographic distribution of the Tannea species of Ecuador and their altitudinal distribution are discussed.     

Species Distribution 2.0: An Accurate Time- and Cost-Effective Method of Prospection Using Street View Imagery

Species occurrence data provide crucial information for biodiversity studies in the current context of global environmental changes. Such studies often rely on a limited number of occurrence data collected in the field and on pseudo-absences arbitrarily chosen within the study area, which reduces the value of these studies. To overcome this issue, we propose an alternative method of prospection using geo-located street view imagery (SVI). Following a standardised protocol of virtual prospection using both vertical (aerial photographs) and horizontal (SVI) perceptions, we have surveyed 1097 randomly selected cells across Spain (0.1x0.1 degree, i.e. 20% of Spain) for the presence of Arundo donax L. (Poaceae). In total we have detected A. donax in 345 cells, thus substantially expanding beyond the now two-centuries-old field-derived record, which described A. donax only 216 cells. Among the field occurrence cells, 81.1% were confirmed by SVI prospection to be consistent with species presence. In addition, we recorded, by SVI prospection, 752 absences, i.e. cells where A. donax was considered absent. We have also compared the outcomes of climatic niche modeling based on SVI data against those based on field data. Using generalized linear models fitted with bioclimatic predictors, we have found SVI data to provide far more compelling results in terms of niche modeling than does field data as classically used in SDM. This original, cost- and time-effective method provides the means to accurately locate highly visible taxa, reinforce absence data, and predict species distribution without long and expensive in situ prospection. At this time, the majority of available SVI data is restricted to human-disturbed environments that have road networks. However, SVI is becoming increasingly available in natural areas, which means the technique has considerable potential to become an important factor in future biodiversity studies.     

Species distribution models support the need of international cooperation towards successful management of plant invasions

To protect native biodiversity and habitats from the negative impacts of biological invasions, comprehensive studies and measures to anticipate invasions are required, especially across countries in a transfrontier context. Species distribution models (SDMs) can be particularly useful to integrate different types of data and predict the distribution of invasive species across borders, both for current conditions and under scenarios of future environmental changes. We used SDMs to test whether predicting invasions and potential spatial conflicts with protected areas in a transfrontier context, under current and future climatic conditions, would provide additional insights on the patterns and drivers of invasion when compared to models obtained from predictions for individual regions/countries (different modelling strategies). The framework was tested with the invasive alien plant Acacia dealbata in North of Portugal/NW Spain Euro-region, where the species is predicted to increase its distribution under future climatic conditions. While SDMs fitted in a transfrontier context and using “the national strategy (with Portugal calibration data) presented similar patterns, the distribution of the invasive species was higher in the former. The transfrontier strategy expectedly allowed to capture a more complete and accurate representation of the species’ niche. Predictions obtained in a transfrontier context are therefore more suitable to support resource prioritisation for anticipation and monitoring impacts of biological invasions, while also providing additional support for international cooperation when tackling issues of global change. Our proposed framework provided useful information on the potential patterns of invasion by A. dealbata in a transfrontier context, with an emphasis on protected areas. This information is crucial for decision-makers focusing on the prevention of invasions by alien species inside protected areas in a transfrontier context, opening a new way for collaborative management of invasions.     

New Records of Noctuoid Moths (Lepidoptera,Noctuoidea) in the Baikal Region

The results of long-term faunistic studies of the noctuoid moths in the Baikal region and the literature review are presented. An annotated check-list including 83 species of the families Notodontidae, Erebidae, Nolidae, and Noctuidae is given. Data on the previous records of the species from the study region are given. The Noctuoidea fauna of Irkutsk Province comprises 462 species, that of the Republic of Buryatia, 419 species, and that of the Baikal region as a whole, 510 species. The distribution limits are expanded for 17 species of the Noctuoidea complex: the new eastern range boundary is established for 11 species of Erebidae and Noctuidae, and the new western one is established for 5 representatives of Notodontidae, Erebidae and Noctuidae. Two species, Actebia confinis (Staudinger, 1881) and Actebia confusa (Alphéraky, 1882), are new to the Russian fauna. The trophic associations of Phidrimana amurensis (Staudinger, 1892) are established: the larvae of this Euro-Siberian species feed on the leaves of different species of elms (Ulmus japonica Rehder, Ulmus pumila L.). Three noctuid species, Calyptra lata (Butler, 1881), Bryophila granitalis (Butler, 1881) and Cosmia trapezinula (Filipjev, 1927), with large disjunctions of their ranges are reported; these moths are apparently relicts of the Atlantic Period of the Holocene.     

The Inadequacy of Morphology for Species and Genus Delineation in Microbial Eukaryotes: An Example from the Parabasalian Termite Symbiont Coronympha

Background

For the majority of microbial eukaryotes (protists, algae), there is no clearly superior species concept that is consistently applied. In the absence of a practical biological species concept, most species and genus level delineations have historically been based on morphology, which may lead to an underestimate of the diversity of microbial eukaryotes. Indeed, a growing body of molecular evidence, such as barcoding surveys, is beginning to support the conclusion that significant cryptic species diversity exists. This underestimate of diversity appears to be due to a combination of using morphology as the sole basis for assessing diversity and our inability to culture the vast majority of microbial life. Here we have used molecular markers to assess the species delineations in two related but morphologically distinct genera of uncultivated symbionts found in the hindgut of termites.

Methodology/Principal Findings

Using single-cell isolation and environmental PCR, we have used a barcoding approach to characterize the diversity of Coronympha and Metacoronympha symbionts in four species of Incisitermes termites, which were also examined using scanning electron microscopy and light microcopy. Despite the fact that these genera are significantly different in morphological complexity and structural organisation, we find they are two life history stages of the same species. At the same time, we show that the symbionts from different termite hosts show an equal or greater level of sequence diversity than do the hosts, despite the fact that the symbionts are all classified as one species.

Conclusions/Significance

The morphological information used to describe the diversity of these microbial symbionts is misleading at both the genus and species levels, and led to an underestimate of species level diversity as well as an overestimate of genus level diversity. The genus ‘Metacoronympha’ is invalid and appears to be a life history stage of Coronympha, while the single recognized species of Coronympha octonaria inhabiting these four termites is better described as four distinct species.     

New data on the changes in the abundance and distribution of several species of beetles (Coleoptera) in European Russia and the Caucasus

Changes in the abundance and distribution of selected species of beetles in European Russia and in the Caucasus are reported. Most of these species have been recorded from the Northwestern Caucasus in the last 10–15 years. The abundance and distribution during the last two years have changed most sharply in the introduced species, the Harlequin lady beetle Harmonia axyridis and two East Asian bruchids, Megabruchidius dorsalis and M. tonkineus. In 2016, the latter has been found in Georgia for the first time, and Harmonia axyridis was found in St. Petersburg. Abundance of the weevil Alcidodes karelinii with the range situated mostly east of the Caucasus and Volga River remains in Northwestern Caucasus at about the previous level. The flea-weevil species, a leaf miner on Ulmus pumila, misidentified previously as Orchestes mutabilis, is described in this paper as Orchestes steppensis sp. n. based on the material from Russia, Kazakhstan, Mongolia and Northern China; no its further distribution westward in 2015–2016 has been found. This species, rapidly widening its range in North America in the recent decade, is misidentified there as Orchestes alni. A key for differentiation of Orchestes alni, O. mutabilis and O. steppensis sp. n. is provided with photographs of adults of all three species. Magdalis armigera has increased abundance in Northwestern Caucasus in 2016 and was for the first time found in Northwestern Russia (Pskov Province) in 2015. Regular faunistic surveys during several decades provide a possibility of recording considerable changes in the abundance of some common species of Coleoptera, often associated with changes in their distribution.     

A Multilocus Species Delimitation Reveals a Striking Number of Species of Coralline Algae Forming Maerl in the OSPAR Maritime Area

Maerl beds are sensitive biogenic habitats built by an accumulation of loose-lying, non-geniculate coralline algae. While these habitats are considered hot-spots of marine biodiversity, the number and distribution of maerl-forming species is uncertain because homoplasy and plasticity of morphological characters are common. As a result, species discrimination based on morphological features is notoriously challenging, making these coralline algae the ideal candidates for a DNA barcoding study. Here, mitochondrial (COI-5P DNA barcode fragment) and plastidial (psbA gene) sequence data were used in a two-step approach to delimit species in 224 collections of maerl sampled from Svalbard (78°96’N) to the Canary Islands (28°64’N) that represented 10 morphospecies from four genera and two families. First, the COI-5P dataset was analyzed with two methods based on distinct criteria (ABGD and GMYC) to delineate 16 primary species hypotheses (PSHs) arranged into four major lineages. Second, chloroplast (psbA) sequence data served to consolidate these PSHs into 13 secondary species hypotheses (SSHs) that showed biologically plausible ranges. Using several lines of evidence (e.g. morphological characters, known species distributions, sequences from type and topotype material), six SSHs were assigned to available species names that included the geographically widespread Phymatolithon calcareum, Lithothamnion corallioides, and L. glaciale; possible identities of other SSHs are discussed. Concordance between SSHs and morphospecies was minimal, highlighting the convenience of DNA barcoding for an accurate identification of maerl specimens. Our survey indicated that a majority of maerl forming species have small distribution ranges and revealed a gradual replacement of species with latitude.     

Historical Land Use Explains Current Distribution of Calcareous Grassland Species

In this study we analyzed if characteristic calcareous grassland species persist in forest habitats after land use change. Furthermore, we investigated whether the current distribution of such species is related to historical land use of the mid-19th century. Current distributions of nine calcareous grassland species were recorded in a region of Upper Franconia, Germany. Historical (up to 1850) and current land-use data were analyzed using historical maps and aerial photographs. To study the effects of historical land use in current species distributions, we used Generalized Estimating Equations (GEE) and ANOVA, accounting for spatial autocorrelation. Variance partitioning was applied to separate the influence of historical versus current land use. On average 26% of the recorded grassland species occurrences are located in sub-optimal forest habitats. Grassland populations are likely to persist in forest for at least 50 years. Even though current land use explains a higher proportion of the variation in species distribution than historical land use alone, model fit could be significantly improved (P?<?0.001) considering the historical component. We conclude that consideration of historical land use is essential to understand the current grassland species distributions and may be of general importance for perennial species of temperate grasslands. In addition, historical legacy has far-reaching implications for conservation biology in terms of realistic assessments of species threat status in present landscapes.     

Predicting the Fate of Biodiversity Using Species�� Distribution Models: Enhancing Model Comparability and Repeatability

Species distribution modeling (SDM) is an increasingly important tool to predict the geographic distribution of species. Even though many problems associated with this method have been highlighted and solutions have been proposed, little has been done to increase comparability among studies. We reviewed recent publications applying SDMs and found that seventy nine percent failed to report methods that ensure comparability among studies, such as disclosing the maximum probability range produced by the models and reporting on the number of species occurrences used. We modeled six species of Falco from northern Europe and demonstrate that model results are altered by (1) spatial bias in species’ occurrence data, (2) differences in the geographic extent of the environmental data, and (3) the effects of transformation of model output to presence/absence data when applying thresholds. Depending on the modeling decisions, forecasts of the future geographic distribution of Falco ranged from range contraction in 80% of the species to no net loss in any species, with the best model predicting no net loss of habitat in Northern Europe. The fact that predictions of range changes in response to climate change in published studies may be influenced by decisions in the modeling process seriously hampers the possibility of making sound management recommendations. Thus, each of the decisions made in generating SDMs should be reported and evaluated to ensure conclusions and policies are based on the biology and ecology of the species being modeled.