Temporal covariation of epibacterial community and surface metabolome in the Mediterranean seaweed holobiont Taonia atomaria

An integrative multi-omics approach allowed monthly variations for a year of the surface metabolome and the epibacterial community of the Mediterranean Phaeophyceae Taonia atomaria to be investigated. The LC–MS-based metabolomics and 16S rDNA metabarcoding data sets were integrated in a multivariate meta-omics analysis (multi-block PLS-DA from the MixOmic DIABLO analysis) showing a strong seasonal covariation (Mantel test: p < 0.01). A network based on positive and negative correlations between the two data sets revealed two clusters of variables, one relative to the ‘spring period’ and a second to the ‘summer period’. The ‘spring period’ cluster was mainly characterized by dipeptides positively correlated with a single bacterial taxon of the Alteromonadaceae family (BD1-7 clade). Moreover, ‘summer’ dominant epibacterial taxa from the second cluster (including Erythrobacteraceae, Rhodospirillaceae, Oceanospirillaceae and Flammeovirgaceae) showed positive correlations with few metabolites known as macroalgal antifouling defences [e.g. dimethylsulphoniopropionate (DMSP) and proline] which exhibited a key role within the correlation network. Despite a core community that represents a significant part of the total epibacteria, changes in the microbiota structure associated with surface metabolome variations suggested that both environment and algal host shape the bacterial surface microbiota.     

How light and nutrients affect the relationship between autotrophic and heterotrophic biomass in a tropical black water periphyton community

This study examines how nutrients and light affect the relationship between autotrophic biomass and non-autotrophic periphyton organic matter in a tropical black water lake biofilm community. We hypothesized that there is no positive correlation between autotrophic and non-autotrophic organic matter in the periphytic community of a black water humic lake, where non-algal components of periphyton can rely on carbon sources external to the periphyton matrix and where nutrient availability is low. Second, we sought to test our hypothesis that non-autotrophic periphyton organic matter will benefit from nutrient enhancement in a lake where the availability of DOC is high. We performed a field experiment using in situ lake mesocosms to manipulate nutrient concentrations and light availability in a 2 × 2 factorial design. Control treatments (no nutrient added) and nutrient treatments (N + P) were compared in different light conditions: high light (near surface water) and low light (near bottom). No positive correlation was found between autotrophic biomass and non-autotrophic periphyton organic matter, but a negative correlation was observed in high nutrient and light conditions. The low C:P and N:P ratios revealed that the non-autotrophic organic matter mostly comprised a heterotrophic microbial biofilm. High levels of light and nutrients together caused significant changes in periphyton community properties. The non-autotrophic periphyton organic matter was negatively affected by nutrient addition, whereas autotrophic biomass was positively affected, especially in high light conditions. Our results strongly suggest that non-autotrophic periphyton organic matter in a humic lake is primarily comprised of a bacterial biofilm that directly competes for nutrients with autotrophs in the periphytic community. We also observed no effect of nutrient addition on periphyton growing in light-limited conditions. These results suggest that heterotrophic periphytic organisms might experience carbon limitation despite the high availability, but usually low quality, of dissolved carbon in the water column of humic lakes.     

Effect of a temperature gradient on Sphagnum fallax and its associated living microbial communities: a study under controlled conditions

Microbial communities living in Sphagnum are known to constitute early indicators of ecosystem disturbances, but little is known about their response (including their trophic relationships) to climate change. A microcosm experiment was designed to test the effects of a temperature gradient (15, 20, and 25°C) on microbial communities including different trophic groups (primary producers, decomposers, and unicellular predators) in Sphagnum segments (0-3 cm and 3-6 cm of the capitulum). Relationships between microbial communities and abiotic factors (pH, conductivity, temperature, and polyphenols) were also studied. The density and the biomass of testate amoebae in Sphagnum upper segments increased and their community structure changed in heated treatments. The biomass of testate amoebae was linked to the biomass of bacteria and to the total biomass of other groups added and, thus, suggests that indirect effects on the food web structure occurred. Redundancy analysis revealed that microbial assemblages differed strongly in Sphagnum upper segments along a temperature gradient in relation to abiotic factors. The sensitivity of these assemblages made them interesting indicators of climate change. Phenolic compounds represented an important explicative factor in microbial assemblages and outlined the potential direct and (or) indirect effects of phenolics on microbial communities.     

Conditionality of circadian rhythmicity: Synergistic action of light and temperature

Summary With cells which have been grown at 20°C, the circadian rhythm of bioluminescence inGonyaulax polyedra disappears at a critical temperature, which is about 12°C. The transition from the rhythmic to the arrhythmic state is very sharp with temperature: the two states are separated by only 1–2°C. Following a return to a higher temperature (20°C) under otherwise constant conditions, the rhythm resumes with its new phase defined by the time of the cool to warm transition. Loss of rhythmicity also occurs in constant bright light, with a similar resumption and phase determination upon transfer to darkness. The experiments described here show that the effects of light and low temperature are additive: rhythmicity is lost under combined low temperature and light intensity treatments which are ineffective individually.Abbreviations CT circadian time - ft-c footcandle - LD 12:12 12 h light/12 h dark cycle NIH Predoctoral Trainee in Biophysics, 2 T01 GM00782-16.     

Seasonal changes in light and temperature affect the balance between light harvesting and light utilisation components of photosynthesis in an evergreen understory shrub

In a temperate climate, evergreen species in the understory are exposed to large changes in photosynthetic photon flux density (PPFD) and temperature over the year. We determined the photosynthetic traits of leaves of an evergreen understory shrub Aucuba japonica at three sites at monthly intervals: understorys of a deciduous forest; an evergreen forest; and a gap in a mixed forest. This set up enabled us to separate the effects of seasonal change in PPFD and temperature on photosynthetic acclimation under natural conditions. The effects of PPFD and temperature were analysed by simple and multiple regression analyses. The amounts of light utilisation components (LU), represented by nitrogen and rubisco contents per area, were higher in winter, when temperature was low and PPFD was high. The LU relative to the amount of light harvesting components (LH), represented by chlorophyll a/b and rubisco/chlorophyll ratios, and the inverse of chlorophyll/nitrogen ratio were also higher in winter. We quantified the effects of PPFD and temperature on the LU and LH components. Across sites PPFD had stronger effects than air temperature, while within a site temperature had stronger effects on photosynthetic acclimation. We concluded that the photosynthetic apparatus is strongly affected by the prevailing PPFD at the time of leaf development. Within a given light regime, however, plants acclimated by increasing LU relative to LH primarily in response to temperature and to a lesser extent to PPFD.     

Nitrogen partitioning in the photosynthetic apparatus of Plantago asiatica leaves grown under different temperature and light conditions: similarities and differences between temperature and light acclimation

Effects of growth temperature and irradiance on nitrogen partitioning among photosynthetic components were studied. Plantago asiatica was grown under different temperature and light conditions. Growth conditions were regulated such that the Chl a/b ratio in leaves grown at a low temperature with a low irradiance was similar to that in leaves grown at a high temperature with a high irradiance, suggesting that the balance between acquisition and utilization of light energy in the photosynthetic apparatus was similar between the two growth conditions. When plotted against the leaf nitrogen content, the RuBP (ribulose-1,5-bisphosphate) carboxylase content did not significantly differ depending on growth conditions. Both high irradiance and low temperature decreased nitrogen partitioning to Chl-protein complexes. Low temperature increased nitrogen allocation to stroma FBPase (fructose-1,6-phosphatase) irrespective of growth irradiance. Gas exchange measurement indicated that the ratio of the electron transport (J(max)) to the maximum carboxylation rate (V(cmax)) was not affected by growth irradiance but by growth temperature. It is concluded that nitrogen partitioning between acquisition and utilization of light energy responds to both growth temperature and irradiance, while nitrogen partitioning between carboxylation and regeneration of RuBP responds only to growth temperature.     

蚂蚁群落与栖境关系研究进展及新趋势

生物群落与栖境的关系是生态学研究的核心之一,蚂蚁群落由于在陆地生态系统中的生物量、分布以及具备的生态功能的重要性,是研究这种关系的理想对象。在查阅大量文献的基础上,简述了蚂蚁物种多样性与栖境关系研究现状。介绍了蚂蚁功能群划分以及在不同尺度上与栖境关系的应用研究,评述了功能群应用的限制。阐明了功能特征的定义以及基于形态特征和营养级方面的蚂蚁群落功能特征与栖境的研究,并对功能特征的研究趋势进行了展望。     

Synergistic effects of abiotic stresses in plants: a case study of nitrogen limitation and saturating light intensity in Arabidopsis thaliana

Under natural conditions, plants are regularly exposed to combinations of stress factors. A common example is the conjunction between nitrogen (N) deficiency and excess light. The combined effect of stress factors is often ignored in studies using controlled conditions, possibly resulting in misleading conclusions. To address this issue, the present study examined the physiological behavior of Arabidopsis thaliana under the effect of varying nitrogen levels and light intensities. The joint influence of low N and excess light had an adverse effect on plant growth, chlorophyll and anthocyanin concentrations, photochemical capacity and the abundance of proteins involved in carbon assimilation and antioxidative metabolism. In contrast, no adverse physiological responses were observed for plants under either nitrogen limitation or high light (HL) intensity conditions (i.e. single stress). The underlying mechanisms for the increased growth in conditions of HL and sufficient nitrogen were a combination of chlorophyll accumulation and an increased number of proteins involved in C3 carbon assimilation, amino acids biosynthesis and chloroplast development. In contrast, combined stress conditions shifts plants from growth to survival by displaying anthocyanin accumulation and an increased number of proteins involved in catabolism of lipids and amino acids as energy substrates. Ultimately switching plants development from growth to survival. Our results suggest that an assessment of the physiological response to the combined effect of multiple stresses cannot be directly extrapolated from the physiological response to a single stress. Specifically, the synergistic interaction between N deficiency and saturating light in Arabidopsis plants could not have been modeled via only one of the stress factors.     

扎龙湿地硅藻植物群落季节变化及其对环境的响应

扎龙湿地位于黑龙江省西部、松嫩平原乌裕尔河下游,是我国北方同纬度地区最完整的湿地。于2012年春、夏、秋3季,对扎龙湿地6个代表性区域进行硅藻标本采集,经观察鉴定,发现硅藻植物140个分类单位,包括121种19变种,隶属于2纲6目9科30属。羽纹纲物种较丰富,占总种类数的95%。硅藻植物群落呈现明显的季节演替,秋季硅藻种类丰富度及相对丰度明显高于春、夏两季,优势种多以淡水、半咸水、喜弱碱的种类为主,优势种与水体的盐度和酸碱度存在一定的响应关系。应用典范对应分析(Canonical Correspondence Analysis,CCA)探讨硅藻植物群落变化与环境因子之间的关系。CCA结果显示在扎龙湿地中,水温、电导率、pH、溶解氧是影响硅藻群落结构变化的主要因素,此外总氮、总磷也是硅藻群落季节演替的重要驱动因子。结合硅藻植物多样性指数和硅藻商对扎龙湿地水质进行综合评价,结果显示扎龙湿地整体为中-寡污带水体,部分水域水质较清洁,少数样点受人为因素影响,呈轻污染。     

Polarized light therapy: Shining a light on the mechanism underlying its immunomodulatory effects

This study investigates the immunomodulatory effects of polychromatic polarized light therapy (PLT) on human monocyte cells. While there is some evidence demonstrating a clinical effect in the treatment of certain conditions, there is little research into its mechanism of action. Herein, U937 monocyte cells were cultured and exposed to PLT. The cells were then analyzed for change in expression of genes and cell surface markers relating to inflammation. It was noted that 6 hours of PLT reduced the expression of the CD14, MHC I and CD11b receptors, and increased the expression of CD86. It was also shown that PLT caused downregulation of the genes IL1B, CCL2, NLRP3 and NOD1, and upregulation of NFKBIA and TLR9. These findings imply that PLT has the capacity for immunomodulation in human immune cells, possibly exerting an anti‐inflammatory effect.     

The effects of different pretreatment conditions and fixation regimes on serotonin immunoreactivity: a quantitative light microscopic study

An investigation was designed to evaluate the effects of three different fixation regimes on the retention of serotonin-like immunoreactivity in rat midbrain tissue sections. The effects of pretreatment with pargyline-HCl and l-tryptophan on the volume fraction of serotonin-like immunoreactive processes were also examined. Rat brain tissue was fixed with 4% paraformaldehyde (Pf), 4% paraformaldehyde-0.2% picric acid-0.05% glutaraldehyde (Pf-Pa-G), or 4% paraformaldehyde-0.2% glutaraldehyde (Pf-G). Tissue was subsequently processed for immunohistochemistry using a modified peroxidase-antiperoxidase technique and quantified at the light microscopic level by point counting. Fixation with Pf resulted in higher volume fraction determinations of axonal serotonin immunoreactivity than did fixation with Pf-Pa-G or Pf-G. These results provide quantitative data which indicate that even low levels of glutaraldehyde in the fixative significantly decrease serotonin immunoreactivity. Pretreatment with pargyline and tryptophan increased the amount of serotonin immunoreactivity in tissue fixed with Pf-G but not in tissue fixed with Pf. Pretreatment with pargyline and tryptophan is thus recommended when using glutaraldehyde in the fixation process to assure adequate serotonin immunoreactivity. Pretreatment in conjunction with glutaraldehyde fixation, however, appears to cause differential increases in serotonin-like immunoreactivity within brain nuclei that may compromise the interpretation of results.     

The developing relationship between the study of fungal communities and community ecology theory

Plant and animal systems had a head start of several decades in community ecology and have largely created the theoretical framework for the field. I argue that the lag in fungal community ecology was largely due to the microscopic nature of fungi that makes observing species and counting their numbers difficult. Thus the basic patterns of fungal occurrence were, until recently, largely invisible. With the development of molecular methods, especially high-throughput sequencing, fungal communities can now be “seen”, and the field has grown dramatically in response. The results of these studies have given us unprecedented views of fungal communities in novel habitats and at broader scales. From these advances we now have the ability to see pattern, compare it to existing theory, and derive new hypotheses about the way communities are assembled, structured, and behave. But can fungal systems contribute to the development of theory in the broader realm of community ecology? The answer to this question is yes! In fact fungal systems already have contributed, because in addition to many important natural fungal communities, fungi also offer exceptional experimental communities that allow one to manipulate, control, isolate and test key mechanisms. I discuss five well-developed systems and some of the contributions they have made to community ecology, and I briefly mention one additional system that is amenable to development.     

Arbuscular mycorrhizal fungi affect plant community structure under various nutrient conditions and stabilize the community productivity

Soil biota could have a significant impact on plant productivity and diversity through benefiting plants and mediating plant–plant interaction. However, it is poorly understood how soil biotic factors interaction with abiotic environments affect plant community diversity and composition. Here, we investigate the community‐level consequences of arbuscular mycorrhizal fungi (AMF) interactions with multiple nutrients and their ecological stoichiometry. We conducted a greenhouse experiment manipulating nitrogen (N) and phosphorus (P) to create soil nutrient availability and N:P gradients for microcosm communities with and without AMF. We found that AMF suppressed plant diversity at low P levels, whereas it did not alter the diversity at high P levels because of trade‐offs in the abundance of the dominant and subordinate species. AMF reduced plant diversity at the intermediate N:P ratios, while AMF did not affect the diversity at low and high N:P ratios. P addition decreased the mycorrhizal contribution to community productivity, whereas N addition reduced the negative effects of AMF on productivity at high P levels. AMF decreased community productivity at low N:P ratios but increased it at high N:P ratios. AMF increased the stoichiometric homoeostasis of plant communities, which was positively correlated with the stability of productivity under variations in soil N:P ratios. Our study demonstrates that both resource availability and stoichiometry influence the effect of AMF on plant community productivity and diversity and suggests that AMF may increase the stability of plant communities under variations in the soil nutrients by increasing the stoichiometric homoeostasis of the plant community.     

A study of the relationship between aquatic insect growth and water temperature in a small stream

The growth of aquatic insects in a small mountain stream was studied with emphasis on water temperature. Growth of the five dominant species was examined in relation to degree-days. This measure accounts for time and the minimum temperature necessary for insect growth. All species showed reduced specific growth rates with lower temperatures, but some (Ephemerella dorothea, Leuctra tenella, Neumoura wui) did not stop growing at even the lowest water temperatures. Both Diplectrona modesta and Paraleptophlebia assimilis had minimum growth temperatures. Studies demonstrated that the growth of stream insects is directly proportional to the number of degree-days experienced by a population.     

Species traits and environmental conditions govern the relationship between biodiversity effects across trophic levels

Changing environments can have divergent effects on biodiversity–ecosystem function relationships at alternating trophic levels. Freshwater mussels fertilize stream foodwebs through nutrient excretion, and mussel species-specific excretion rates depend on environmental conditions. We asked how differences in mussel diversity in varying environments influence the dynamics between primary producers and consumers. We conducted field experiments manipulating mussel richness under summer (low flow, high temperature) and fall (moderate flow and temperature) conditions, measured nutrient limitation, algal biomass and grazing chironomid abundance, and analyzed the data with non-transgressive overyielding and tripartite biodiversity partitioning analyses. Algal biomass and chironomid abundance were best explained by trait-independent complementarity among mussel species, but the relationship between biodiversity effects across trophic levels (algae and grazers) depended on seasonal differences in mussel species’ trait expression (nutrient excretion and activity level). Both species identity and overall diversity effects were related to the magnitude of nutrient limitation. Our results demonstrate that biodiversity of a resource-provisioning (nutrients and habitat) group of species influences foodweb dynamics and that understanding species traits and environmental context are important for interpreting biodiversity experiments.     

A study on the relationship between Atlantic sea surface temperature and Amazonian greenness

The growth of tropical rainforest in Amazon is critically vulnerable to the change in rainfall and radiation than in temperature, and that amount of rainfall and cloudiness in the northeast region of South American is strongly affected by the Atlantic sea surface temperature (SST). Results from recent model experiments for future climate projection have indicated a reduction of Amazonian greenness by a weakening of tropical vapor circulation system related with the change in SST. Therefore, the observational investigation of the relations between the Amazon greenness and Atlantic SST is fundamental to understand the response of Amazonian tropical forest to climate change. In this study, the effect of Atlantic SST on the spatial and temporal change of the Normalized Difference Vegetation Index (NDVI) in the Amazonian region is examined by using satellite remote sensing data for the period of 1981–2001. A strong correlation between NDVI and SST is found for certain regions in Amazon during the periods of 1980s and 1990s, respectively. In addition, strong correlations with NDVI lagging behind SST for two months and one year, respectively, are also identified from the interannual December-to-February (rain season) variations during 1981–2001. Despite these findings, the mechanisms behind the identified correlation remain unclear. Further analyses using observed precipitation and radiation data are required to understand the potential changes of Amazonian rainforest in the context of global warming.