A national fish passage barrier inventory to support fish passage policy implementation and estimate river connectivity in New Zealand

Fragmentation of river systems is a key driver of freshwater biodiversity loss. Instream structure inventories are an essential component of delivering a strategic approach to restoring river connectivity. We used a range of data sources to collate the best available information on fish passage barriers and instream structures across the whole of New Zealand. To support implementation of new national policy objectives to maintain and improve river connectivity, the structure inventory has been integrated with a new fish passage assessment mobile application that allows river managers and asset owners to ground-truth, update and add records to the database. The data are provided open access and are being used for environmental reporting and to support strategic prioritisation of barrier mitigation actions. We used these data to quantify river connectivity at regional and national scales and demonstrated that at least half of New Zealand's river network is upstream of fish migration barriers. Limitations to our calculation of upstream river connectivity included the unknown influence of unrecorded structures, particularly on private land, missing information within recorded data, the large number of instream structures that have been identified but not yet assessed for their risk to fish passage, and spatial errors in the automated pairing of structures to a digital river network. A critical challenge for river managers is understanding the consequences of these uncertainties in the data for prioritisation and decision-making regarding barrier removal or mitigation.     

Fish habitat rehabilitation using wood in the world

To provide river managers and researchers with practical knowledge about fish rehabilitation, various studies of fish habitat rehabilitation that used wood were reviewed. The review focuses on fish responses, wood installation methods, and geomorphic features of the rehabilitation sites. Most studies were conducted in moderately sized (small and medium) streams with relatively high bed gradients and aimed to improve the habitats of salmonid species. In this stream type, structures spanning the full (log dam) and partial (log deflector) width of the river were most common, and wood structures that created pools and covers were successful in improving fish habitat. Some projects were conducted in moderately sized low-gradient streams, in which wooden devices used to create instream cover were effective for fish assemblages. There were few studies in other aquatic ecosystems. However, well-designed large wood structures, known as engineered log jams, were used in rehabilitation projects for large rivers. In slack-water or lentic systems such as side-channels, estuaries, and reservoirs, small and large wood structures that created cover were used to improve habitat for many fish species. For successful fish habitat rehabilitation projects, the hydrogeomorphic conditions of rehabilitation sites should be carefully examined to avoid physical failure of wood structures. Although artificial wood structures can be used to improve fish habitat in various aquatic ecosystems, they should be considered to be a complementary or interim habitat enhancement technique. The recovery of natural dynamic processes at the watershed scale is the ultimate target of restoration programs.     

A qualitative procedure for the assessment of the habitat integrity status of the Luvuvhu River (Limpopo system,South Africa)

The riparian zone and instream habitat integrity of the Luvuvhu River were assessed based on a qualitative rating of the impacts of major disturbance factors such as water abstraction, flow regulation, bed and channel modification, etc. A system was devised to assess the impact of these factors on the relative frequency and variability of habitats on a spatial and temporal scale gauged against habitat characteristics that could have been expected to occur under conditions not anthropogenically influenced. It was found that deterioration of habitat integrity can be ascribed primarily to water abstraction. This has resulted in the cessation of surface flow in a naturally perennial river during the dry season and during droughts with consequent tree deaths and a loss of fast flowing instream habitat types in the main stem of the river. The relatively small high rainfall area in the catchment, the highly variable rainfall pattern and the occurrence of sporadic severe droughts exacerbate the impact of water abstraction on the instream and riparian habitats with expected detrimental consequences for the associated biota. The effect of water abstraction is particularly severe in the lower part of the river which flows through the Kruger National Park as no perennial tributaries join the Luvuvhu River in this section. Other factors which affect the habitat integrity of the river are the removal of indigenous riparian vegetation in some river sections, encroachment by exotic vegetation, bank erosion and stream bed modification.     

Assessment of instream structures for habitat improvement for two critically endangered fish species

The number of fish habitat improvement schemes has greatly increased in response to the widespread degradation of aquatic ecosystems. However, many of these enhancement projects often fail to create expected habitat conditions, because they are rarely planned and executed with inputs from the species’ habitat requirements throughout their life histories, and it is frequently assumed that the implementation of a specific instream structure for habitat improvement will always benefit all species present. Using a 2D hydraulic model, the present study evaluates the potential habitat improvement for two critically endangered fish species—the Southwestern arched-mouth nase Iberochondrostoma almacai and the Arade chub Squalius aradensis—resulting from simulating the introduction of different instream structures (islands, lateral bays, and deflectors) in a modified Mediterranean river reach. The introduction of islands in the river channel was found to be the best improvement measure for YOY and juvenile nase and chub, as shown by increases in the mean annual Weighted Usable Area (WUA) of more than 100 and 50%, respectively, compared to the present conditions. On the other hand, the simulation with current deflectors proved to be the worst scenario, particularly for nase, with mean annual WUA decreasing by 3.6, 17.8 and 22.7% for YOY, juveniles and adults, respectively. The findings of this study point to the need to account for different species life-history stages when modelling the implementation of instream structures for habitat improvement and also provide a sound basis for future conservation-related studies conducted in Mediterranean rivers that harbour other threatened “sister” species.     

Spatial and temporal variation of fish assemblages and their associations to habitat variables in a mountain stream of north Tiaoxi River,China

The spatial and temporal variations of the fish assemblages in mountain streams of China are poorly understood. The relationships between the fish assemblage and selected habitat features were examined in the North Tiaoxi River, one of headwaters of Taihu Lake. A total of 3,348 individuals belonging to 5 orders, 11 families, 25 genera and 34 species were collected including 33 native species and one invasive species. Among those, about 20 species were endemic to China. Non-metric Multidimensional Scaling (NMDS) was applied to compare fish assemblage structures from upstream to downstream during four seasons. Species assemblages differed along the stream continuum, but there was little apparent change associated with the seasons. Species richness and Shannon-Weaver index (H′) tended to increase along the stream continuum from the upstream to downstream and the proportion of invertivorous fish tended to significantly decrease along the continuum with a parallel significant increase in the percentage of omnivores. Fish assemblages were significantly related to both water quality and habitat structure variables. Canonical Correspondence Analysis ordinations (CCA) revealed that 6 of the 14 selected environmental variables had significant relationships with the fish assemblage such as distance to source, stream width, altitude, pH, water depth, and water velocity and different sampling sites were associated with different environmental variables in different seasons. The main differences in fish assemblage structure and diversity within the whole watercourse are probably related to large-scale factors such distance to source, altitude and stream width. Differences of instream characteristics are likely to be caused by natural variability of the ecosystems but also, in some case, by anthropogenic influence like human settlements, agriculture and river embankment and pollution from small factory.     

Factors determining length distribution and abundance of the European eel, Anguilla anguilla, in the River Mondego (Portugal)

1. The distribution and abundance of the European eel, Anguilla anguilla, were investigated in the Mondego River, a strongly modified river in central Portugal. Nine freshwater sites, located below the first impassable obstacle to eel migration, were surveyed for 2 years. The study was conducted monthly during the first year and seasonally during the second year. Fish were caught by electric fishing and, physical and biotic variables potentially influencing eel length distribution and abundance were determined at each sampling session. 2. Canonical correspondence analysis (CCA) was used to explain the relationships between abiotic and biotic habitat variables, and eel length distribution. Spatial variation was strongly associated with distance from the sea, number of obstacles, river width and percentage of instream cover. Depth, river flow, water temperature and cannibalism had weaker effects on the longitudinal distribution, but contributed as explanatory variables for the model. The influence of spatial variables outweighed the importance of temporal variables as predictors in this model. 3. Length distribution changed in space from a dominance of small eels (<100 mm) closer to the sea to larger eels (≥250 mm) in the upper reaches of the river. The smallest length class (eels <100 mm) was strongly associated with wider stretches where instream cover, mainly composed of aquatic submerged macrophytes, was abundant (>75% area coverage). On the contrary, larger eels (≥250 mm) preferred deeper stretches with stronger river flow and less instream cover. 4. The effect of biotic interactions with conspecifics as well as with the non‐native red swamp crayfish Procambarus clarkii, in sites with poor instream cover, modified this general pattern of distribution leading to fewer eels <100 mm at some sites closer to the sea. Therefore, despite the ubiquity and plasticity shown by this species, there were clear ontogenetic variations in habitat use such that the first two canonical axes of a CCA accounted for 58.4% of the spatial variability in size structure.     

Responses of stream fish populations to farming intensity and water abstraction in an agricultural catchment

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The effect of river restoration on fish,macroinvertebrates and aquatic macrophytes: A meta-analysis

An increasing number of rivers have been restored over the past decades and several studies investigated the effect on biota. The published monitoring results have already been summarized in narrative reviews but there are few quantitative reviews and a comprehensive meta-analysis on different organism groups and factors influencing restoration effect is missing. We compiled monitoring results and information on catchment, river and project characteristics from peer-reviewed literature and unpublished databases to (i) quantify the effect of restoration measures on fish, macroinvertebrates and macrophytes, and (ii) identify predictors which influence restoration effect. Results indicated significant effects of restoration on all three organism groups, especially of widening projects on macrophyte richness/diversity, instream measures on fish and macroinvertebrates, and higher effects on abundance/biomass compared to richness/diversity. Restoration effect was most strongly affected by agricultural land use, river width and project age. Effects were smaller but restoration generally still increased richness/diversity and abundance/biomass in agricultural catchments. Since land use is a proxy for different pressures, the underlying causal relationships have to be investigated in more detail. Project age was the most important factor but had non-linear and even negative effects on restoration outcome, indicating that restoration effects may vanish over time. The meta-analysis indicated that river managers in general can expect an increase of richness/diversity and abundance/biomass of all three organism groups investigated, especially of macrophytes in widening projects and of fish and macroinvertebrates if instream measures are applied. However, variability was high, stressing the need for adaptive management approaches. Furthermore, the large but non-linear and different (even negative) effects of project age stressed the need for long-time monitoring to better understand the trajectories of change caused by restoration measures and to identify sustainable measures. The meta-analysis was restricted to metrics commonly reported in literature and future studies would greatly benefit from authorities and scientists reporting original monitoring data, which would allow to use functional metrics to investigate the effect of restoration measures and to infer causal relationships.     

On the use of climate covariates in aquatic species distribution models: are we at risk of throwing out the baby with the bath water?

Species distribution models (SDMs) in river ecosystems can incorporate climate information by using air temperature and precipitation as surrogate measures of instream conditions or by using independent models of water temperature and hydrology to link climate to instream habitat. The latter approach is preferable but constrained by the logistical burden of developing water temperature and hydrology models. We therefore assessed whether regional scale, freshwater SDM predictions are fundamentally different when climate data versus instream temperature and hydrology are used as covariates. Maximum entropy (MaxEnt) SDMs were built for 15 freshwater fishes using one of two covariate sets: 1) air temperature and precipitation (climate variables) in combination with physical habitat variables; or 2) water temperature, hydrology (instream variables) and physical habitat. Three procedures were then used to compare results from climate vs instream models. First, equivalence tests assessed average pairwise differences (site‐specific comparisons throughout each species’ range) among climate and instream models. Second, ‘congruence’ tests determined how often the same stream segments were assigned high habitat suitability by climate and instream models. Third, Schoener's D and Warren's I niche overlap statistics quantified range‐wide similarity in predicted habitat suitability from climate vs instream models. Equivalence tests revealed small, pairwise differences in habitat suitability between climate and instream models (mean pairwise differences in MaxEnt raw scores for all species < 3 × 10^–4). Congruence tests showed a strong tendency for climate and instream models to predict high habitat suitability at the same stream segments (median congruence = 68%). D and I statistics reflected a high margin of overlap among climate and instream models (median D = 0.78, median I = 0.96). Overall, we found little support for the hypothesis that SDM predictions are fundamentally different when climate versus instream covariates are used to model fish species’ distributions at the scale of the Columbia Basin.     

Success of Instream Habitat Structures After a 50-Year Flood in Gold Creek, Montana

Gold Creek, in western Montana, lost complexity and diversity of fish habitat following riparian logging activities, removal of instream wood, and subsequent scouring. In the 4.8-km study area, the stream was almost totally void of large woody debris (4.2 pieces/km) and associated pools (1.3 pools/km). We constructed 66 structures made of natural materials (rock and wood) that resulted in 61 new pools in the study area in an attempt to restore salmonid habitat in the fall of 1996. An estimated 50-year recurrence interval flood occurred in the following spring. Of the original 66 structures, 55 (85%) remained intact and stable. Laterally confined reaches retained significantly more pools than laterally extended reaches. Owing to a history of anthropogenic impacts in forested streams in the intermountain west, restoration efforts are needed. If instream structures are tailored to specific morphologic channel types, fish habitat restoration can be successful and withstand major floods.     

Quantifying the direct and indirect effects of flow‐related disturbance on stream fish assemblages

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High‐resolution riparian vegetation mapping to prioritize conservation and restoration in an impaired desert river

In highly impaired watersheds, it is critical to identify both areas with desirable habitat as conservation zones and impaired areas with the highest likelihood of improvement as restoration zones. We present how detailed riparian vegetation mapping can be used to prioritize conservation and restoration sites within a riparian and instream habitat restoration program targeting 3 native fish species on the San Rafael River, a desert river in southeastern Utah, United States. We classified vegetation using a combination of object‐based image analysis (OBIA) on high‐resolution (0.5 m), multispectral, satellite imagery with oblique aerial photography and field‐based data collection. The OBIA approach is objective, repeatable, and applicable to large areas. The overall accuracy of the classification was 80% (Cohen's κ = 0.77). We used this high‐resolution vegetation classification alongside existing data on habitat condition and aquatic species' distributions to identify reaches' conservation value and restoration potential to guide management actions. Specifically, cottonwood (Populus fremontii) and tamarisk (Tamarix ramosissima) density layers helped to establish broad restoration and conservation reach classes. The high‐resolution vegetation mapping precisely identified individual cottonwood trees and tamarisk thickets, which were used to determine specific locations for restoration activities such as beaver dam analogue structures in cottonwood restoration areas, or strategic tamarisk removal in high‐density tamarisk sites. The site prioritization method presented here is effective for planning large‐scale river restoration and is transferable to other desert river systems elsewhere in the world.     

Effects of pasture conversion to sugarcane for biofuel production on stream fish assemblages in tropical agroecosystems

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河流生态径流计算的逐月频率计算法

界定了生态径流、最小生态径流、最大生态径流、适宜生态径流的概念,提出了一种新的河流生态径流计算方法——逐月频率计算法,指出了方法的优缺点以及适用范围。以计算洛阳市境内伊河的栾川站和龙门镇站生态径流为例,说明了计算过程,同时用Tennant法作对比。结果表明:运用新的逐月频率计算法比用以往的逐月频率计算法得到的适宜生态径流过程径流量要大,河流的生态状况更好,更有利于河流自身的生态健康和河流周围生物栖息地的保护。     

Differential responses by two closely related native fishes to restoration actions

Globally, river degradation has decimated freshwater fish populations. To help reverse this trend in a southeastern Australia river, we used multiple restoration actions, including reintroduction of instream woody habitat, riparian revegetation, removal of a weir hindering fish movement, fencing out livestock, and controlling riparian weeds. We monitored the responses of native fish at the segment scale (20 km) and reach scale (0.3 km) over 7 years to assess the effectiveness of the different restoration strategies. Two closely related species, Murray cod Maccullochella peeli and trout cod Maccullochella macquariensis, increased at the restored segment compared with the control segment. However, inherent differences between river segments and low sample size hampered assessment of the mechanisms responsible for segment‐scale changes in fish abundance. In contrast, at the reach scale, only M. peeli abundance significantly increased in reaches supplemented with wood. These differential responses by 2 closely related fish species likely reflect species‐specific responses to increased habitat availability and enhanced longitudinal connectivity when the weir improved passage around a fishway. Changes in M. peeli abundance in segments supplemented with and without wood suggest an increase in carrying capacity and not simply a redistribution of individuals within the segment, facilitated the observed expansion. Our findings confirm the need to consider individual fish species' habitat preferences carefully when designing restoration interventions. Further, species‐specific responses to restoration actions provide waterway managers with precise strategies to target fish species for recovery and the potential to predict fish outcomes based on ecological preferences.     

On the interaction of turbulent flow and feeding behaviour of juvenile Atlantic Salmon (Salmo salar)

Anthropogenic activities can dramatically modify the riverine habitat of juvenile Atlantic salmon ( Salmo salar ). In the perspective of protecting and restoring the fluvial habitat, bioenergetic models are often used to estimate fish habitat quality. These models determine the habitat quality as the ratio between the energetic gains (food) and costs (growth, metabolism) of a fish. The energetic costs of swimming in a river are generally estimated using the average flow velocity without consideration of the effect of turbulence. Juvenile Atlantic salmon (JAS) live in rivers characterized by intense velocity fluctuations, which are often described as a succession of high‐ and low‐speed flow regions. These flow structures are likely to affect the JAS activity that consists of long periods of sit‐and‐wait at the top of a protuberant rock interrupted by short bursting motions to capture drifting food particles. To minimize the energetic costs, it is hypothesized that JAS use low‐speed flow regions to initiate and undertake their feeding motions.  To improve bioenergetic modelling, this study aimed at analyzing the relation between turbulent flow structures and the feeding behaviour of JAS in a natural gravel‐bed river. We filmed eight JAS during 30 min with a submersible video camera while simultaneously measuring velocity fluctuations close to the fish in the St. Marguerite River, Quebec, Canada. Our results show that the proportion of time used for feeding motions decreases with increasing turbulent intensity and mean flow velocity; and that JAS do not seem to prefer low‐speed flow regions to initiate their feeding motions.     

Evidence of iteroparity in the widely distributed diadromous fish inanga Galaxias maculatus and potential implications for reproductive output

Gaps in understanding variability among populations of inanga Galaxias maculatus in the timing of reproduction were addressed in southern New Zealand (NZ), where G. maculatus constitutes a declining fishery. Reproductive activity was delayed by 1 month on the west coast compared with the east coast and the west coast spawning season was prolonged into winter. The evidence for post‐spawning survival of some fish was unequivocal from histological studies. These older and larger fish contributed disproportionately to egg production. Estimates of fecundity were considerably lower than those previously calculated for NZ populations. The importance of quality habitats being available during critical life history periods are highlighted. It was apparent that some streams supported fish that were larger and in better condition and that this translated into greatly increased fecundity. Future research should focus on whether this is a legacy of these fish experiencing better pre‐settlement marine habitat as larvae, or higher quality instream habitat enhancing the growth and development of adults.     

SOME OBSERVATIONS ON THE FISH LIFE IN A SEASONAL SAND RIVER

Summary

Five fish species were collected in a seasonal sand river that had migrated upstream more than 150 km from the permanent Limpopo River. The population structure indicated that mainly juveniles had taken part in this colonisation. No fish were collected in the winter when the river was dry. Information was obtained of fish surviving underground in the dry river bed.     

Genetic variability analysis of Giant river cattish (<Emphasis Type="Italic">Sperata seenghala</Emphasis>) populations from Indus river system by RAPD-PCR

The Giant river catfish, Sperata seenghala (Sykes) is commercially very important fish species of South Asia. Genetic variability between its populations collected from two rivers i.e. river Sutlej and river Beas of Indus river system in India were examined using randomly amplified polymorphic DNA analysis. Total 38 fish samples were collected from river Sutlej whereas 46 fish samples were collected from river Beas. Total 40 primers were screened, out of these 7 were selected for studying polymorphism which produced a total of 64 RAPD loci in two populations. Percentage polymorphic loci calculated following 95% criterion was 89.06 % for Beas population as compared to 95.31 % for Sutlej population. Moderate level of genetic divergence (genetic distance of 0.0486) between both the populations suggests distinct population substructure of giant river catfish in both the rivers.     

Relative leaping abilities of native versus invasive cyprinids as criteria for selective barrier design

Restoration of river connectivity favors the spread of native but also of exotic invasive populations, mainly freshwater fish. This has rarely been studied, and never between migrating cyprinids. To harmonize both objectives, the feasibility of a selective leaping barrier for migratory cyprinids is studied through the measurement of fish leaping capabilities while freely migrating at a weir in the Guadiana River of southwest Spain. A cross-population analysis provided the cost-benefit outcomes of completely blocking the invasive Carassius auratus while allowing negotiation for most of the native Luciobarbus sp. populations. Larger fish reached higher leap heights, the highest being attained by the native barbel species. Barbels reached up to four times its total length and a maximum height of approximately 150 cm, while the figures for the invasive goldfish were double total length with a maximum of approximately 80 cm. The selective obstacle height (SOH) for goldfish was 81.2 cm, the estimated maximum height that the tip of a jumping goldfish could reach. Facility designs (whether culvert, weir or fish pass) with this SOH criterion guarantees complete migration failure of goldfish. Also, most (95–99%) of the barbels migrating populations will surpass the SOH regardless of body length; only the less capable or those in poor condition will be blocked. Advice on SOH utility to evaluate existing instream structures—and their position within the cost-benefit balance—is provided.