Effects of Methane Metabolism on Nitrification and Nitrous Oxide Production in Polluted Freshwater Sediment

We report the effect of CH₄ and of CH₄ oxidation on nitrification in freshwater sediment from Hamilton Harbour, Ontario, Canada, a highly polluted ecosystem. Aerobic slurry experiments showed a high potential for aerobic N₂O production in some sites. It was suppressed by C₂H₂, correlated to NO₃^- production, and stimulated by NH₄⁺ concentration, supporting the hypothesis of a nitrification-dependent source for this N₂O production. Diluted sediment slurries supplemented with CH₄ (1 to 24 μM) showed earlier and enhanced nitrification and N₂O production compared with unsupplemented slurries (≤1 μM CH₄). This suggests that nitrification by methanotrophs may be significant in freshwater sediment under certain conditions. Suppression of nitrification was observed at CH₄ concentrations of 84 μM and greater, possibly through competition for O₂ between methanotrophs and NH₄⁺ -oxidizing bacteria and/or competition for mineral N between these two groups of organisms. In Hamilton Harbour sediment, the very high CH₄ concentrations (1.02 to 6.83 mM) which exist would probably suppress nitrification and favor NH₄⁺ accumulation in the pore water. Indeed, NH₄⁺ concentrations in Hamilton Harbour sediment are higher than those found in other lakes. We conclude that the impact of CH₄ metabolism on N cycling processes in freshwater ecosystems should be given more attention.     

Biphasic Behavior of Anammox Regulated by Nitrite and Nitrate in an Estuarine Sediment

The production of N₂ gas via anammox was investigated in sediment slurries at in situ NO₂⁻ concentrations in the presence and absence of NO₃⁻. With single enrichment above 10 μM ¹⁴NO₂⁻ or ¹⁴NO₃⁻ and ¹⁵NH₄⁺, anammox activity was always linear (P < 0.05), in agreement with previous findings. In contrast, anammox exhibited a range of activity below 10 μM NO₂⁻ or NO₃⁻, including an elevated response at lower concentrations. With 100 μM NO₃⁻, no significant transient accumulation of NO₂⁻ could be measured, and the starting concentration of NO₂⁻ could therefore be regulated. With dual enrichment (1 to 20 μM NO₂⁻ plus 100 μM NO₃⁻), there was a pronounced nonlinear response in anammox activity. Maximal activity occurred between 2 and 5 μM NO₂⁻, but the amplitude of this peak varied across the study (November 2003 to June 2004). Anammox accounted for as much as 82% of the NO₂⁻ added at 1 μM in November 2003 but only for 15% in May 2004 and for 26 and 5% of the NO₂⁻ added at 5 μM for these two months, respectively. Decreasing the concentration of NO₃⁻ but holding NO₂⁻ at 5 μM decreased the significance of anammox as a sink for NO₂⁻. The behavior of anammox was explored by use of a simple anammox-denitrification model, and the concept of a biphasic system for anammox in estuarine sediments is proposed. Overall, anammox is likely to be regulated by the availability of NO₃⁻ and NO₂⁻ and the relative size or activity of the anammox population.     

Ammonium, nitrate, and total nitrogen in the soil water of feedlot and field soil profiles

A level feedlot, located in an area consisting of Wann silt loam changing with depth to sand, appears to contribute no more NO₃^- nitrogen, NH₄⁺ nitrogen, and total nitrogen to the shallow water table beneath it than an adjacent cropped field. Soil water samples collected at 46, 76, and 107 cm beneath the feedlot surface generally showed NO₃^- nitrogen concentrations of less than 1 μg/ml. During the summer months, soil water NO₃^- nitrogen increased at the 15-cm depth, indicating that nitrification took place at the feedlot surface. However, the low soil water NO₃^- nitrogen values below 15 cm indicate that denitrification takes place beneath the surface.     

Dimethylsulfide and methane thiol in sediment porewater of a Danish estuary

Seasonal variation of dimethylsulfide (DMS) and methane thiol (MSH) concentrations in sediment porewater was determined in a Danish estuary. Dimethylsulfide (DMDS) was never found. Detectable DMS levels of up to 0.1 M were found only in the summer and only within the upper 5 cm of the sediment. The DMS accumulation was probably associated with decomposing fragments of macro-algae in the surface layer. Significant MSH accumulation of up to 1 M was found only in the deep, CH₄-rich sediment below the SO₄ ^2- zone. With depth, a detectable MSH level could thus be observed below the 1 mM SO₄ ^2--isopleth which also marked the SO₄ ^2--CH₄ transition. The transition zone was located deeper in the sediment in winter (20–25 cm depth) than in summer (5–10 cm depth). The absence of MSH in the SO₄ ^2- zone could be due to rapid utilization of the compound by SO₄ ^2--reducing bacteria. A possible involvement of MSH in anaerobic CH₄ oxidation at the transition zone is discussed; CH₄ and sulfide (HS^- form, pH 7) are proposed to form MSH and H₂ which in turn may be metabolized by, e.g. SO₄ ^2--reducing bacteria.     

H2O2-Induced Oxidative Stress Affects SO4= Transport in Human Erythrocytes

The aim of the present investigation was to verify the effect of H₂O₂-induced oxidative stress on SO₄⁼ uptake through Band 3 protein, responsible for Cl^-/HCO₃^- as well as for cell membrane deformability, due to its cross link with cytoskeletal proteins. The role of cytoplasmic proteins binding to Band 3 protein has been also considered by assaying H₂O₂ effects on hemoglobin-free resealed ghosts of erythrocytes. Oxidative conditions were induced by 30 min exposure of human erythrocytes to different H₂O₂ concentrations (10 to 300 μM), with or without GSH (glutathione, 2 mM) or curcumin (10 μM), compounds with proved antioxidant properties. Since SO₄⁼ influx through Band 3 protein is slower and better controllable than Cl^- or HCO₃^- exchange, the rate constant for SO₄⁼ uptake was measured to prove anion transport efficiency, while MDA (malondialdehyde) levels and –SH groups were estimated to quantify the effect of oxidative stress. H₂O₂ induced a significant decrease in rate constant for SO₄⁼ uptake at both 100 and 300 μM H₂O₂. This reduction, observed in erythrocytes but not in resealed ghosts and associated to increase in neither MDA levels nor in –SH groups, was impaired by both curcumin and GSH, whereas only curcumin effectively restored H₂O₂-induced changes in erythrocytes shape. Our results show that: i) 30 min exposure to 300 μM H₂O₂ reduced SO₄⁼ uptake in human erythrocytes; ii) oxidative damage was revealed by the reduction in rate constant for SO₄⁼ uptake, but not by MDA or –SH groups levels; iii) the damage was produced via cytoplasmic components which cross link with Band 3 protein; iv) the natural antioxidant curcumin may be useful in protecting erythrocytes from oxidative injury; v) SO₄⁼ uptake through Band 3 protein may be reasonably suggested as a tool to monitor erythrocytes function under oxidative conditions possibly deriving from alcohol consumption, use of drugs, radiographic contrast media administration, hyperglicemia or neurodegenerative diseases.     

Suppression of peatland methane emission by cumulative sulfate deposition in simulated acid rain

This field manipulation study tested the effect of weekly pulses of solutions of NH₄NO₃ and (NH₄)₂SO₄ salts on the evolution of CH₄ and N₂O from peatland soils. Methane and nitrous oxide emission from a nutrient-poor fen in northern Minnesota USA was measured over a full growing season from plots receiving weekly additions of NH₄NO₃ or (NH₄)₂SO₄. At this relatively pristine site, natural additions of N and S in precipitation occur at 8 and 5 kg ha^–1 y^–1, respectively. Nine weekly additions of the dissolved salts were made to increase this to a total deposition of 31 kg N ha^–1 y^–1 on the NH₄NO₃-amended plots and 30 and 29 kg ha^–1 y^–1 of N and S, respectively, in the (NH₄)₂SO₄-amended plots. Methane flux was measured weekly from treatment and control plots and all data comparisons are made on plots measured on the same day.After the onset of the treatments, and over the course of the growing season, CH₄ emission from the (NH₄)₂SO₄-amended plots averaged 163 mg CH₄ m^–2 d^–1, significantly lower than the same-day control plot mean of 259 mg CH₄ m^–2 d^–1 (repeated measures ANOVA). Total CH₄ flux from (NH₄)₂SO₄ treatment plots was one third lower than from control plots, at 11.7 and 17.1 g CH₄ m^–2, respectively. Methane emission from the NH₄NO₃-amended plots (mean of 256 mg CH₄ m^–2 d^–1) was not significantly different from that of controls measured on the same day (mean of 225 mg CH₄ m^–2 d^–1). Total CH₄ flux from NH₄NO₃ treatment plots and same-day controls was 16.9 and 15.1 g CH₄ m^–2, respectively. In general, stable, relatively warm and wet periods followed by environmental `triggers' such as rainfall or changes in water table or atmospheric pressure, which produced a CH<sub>4</sub> `pulse' in the other plots, produced no observable peak in CH₄ emission from the (NH₄)₂SO₄-amended plots. Nitrous oxide emission from all of the plots was below the detection limit over the course of the experiment.     

Denitrification in San Francisco Bay Intertidal Sediments

The acetylene block technique was employed to study denitrification in intertidal estuarine sediments. Addition of nitrate to sediment slurries stimulated denitrification. During the dry season, sediment-slurry denitrification rates displayed Michaelis-Menten kinetics, and ambient NO₃⁻ + NO₂⁻ concentrations (≤26 μM) were below the apparent K_m (50 μM) for nitrate. During the rainy season, when ambient NO₃⁻ + NO₂⁻ concentrations were higher (37 to 89 μM), an accurate estimate of the K_m could not be obtained. Endogenous denitrification activity was confined to the upper 3 cm of the sediment column. However, the addition of nitrate to deeper sediments demonstrated immediate N₂O production, and potential activity existed at all depths sampled (the deepest was 15 cm). Loss of N₂O in the presence of C₂H₂ was sometimes observed during these short-term sediment incubations. Experiments with sediment slurries and washed cell suspensions of a marine pseudomonad confirmed that this N₂O loss was caused by incomplete blockage of N₂O reductase by C₂H₂ at low nitrate concentrations. Areal estimates of denitrification (in the absence of added nitrate) ranged from 0.8 to 1.2 μmol of N₂ m⁻² h⁻¹ (for undisturbed sediments) to 17 to 280 μmol of N₂ m⁻² h⁻¹ (for shaken sediment slurries).     

Nitrification and Denitrification in Lake and Estuarine Sediments Measured by the 15N Dilution Technique and Isotope Pairing

The transformation of nitrogen compounds in lake and estuarine sediments incubated in the dark was analyzed in a continuous-flowthrough system. The inflowing water contained ¹⁵NO₃^-, and by determination of the isotopic composition of the N₂, NO₃^-, and NH₄⁺ pools in the outflowing water, it was possible to quantify the following reactions: total NO₃^- uptake, denitrification based on NO₃^- from the overlying water, nitrification, coupled nitrification-denitrification, and N mineralization. In sediment cores from both lake and estuarine environments, benthic microphytes assimilated NO₃^- and NH₄⁺ for a period of 25 to 60 h after darkening. Under steady-state conditions in the dark, denitrification of NO₃^- originating from the overlying water accounted for 91 to 171 μmol m^-2 h^-1 in the lake sediments and for 131 to 182 μmol m^-2 h^-1 in the estuarine sediments, corresponding to approximately 100% of the total NO₃^- uptake for both sediments. It seems that high NO₃^- uptake by benthic microphytes in the initial dark period may have been misinterpreted in earlier investigations as dissimilatory reduction to ammonium. The rates of coupled nitrification-denitrification within the sediments contributed to 10% of the total denitrification at steady state in the dark, and total nitrification was only twice as high as the coupled process.     

Kinetics of Denitrifying Growth by Fast-Growing Cowpea Rhizobia

Two fast-growing strains of cowpea rhizobia (A26 and A28) were found to grow anaerobically at the expense of NO₃⁻, NO₂⁻, and N₂O as terminal electron acceptors. The two major differences between aerobic and denitrifying growth were lower yield coefficients (Y) and higher saturation constants (K_s) with nitrogenous oxides as electron acceptors. When grown aerobically, A26 and A28 adhered to Monod kinetics, respectively, as follows: K_s, 3.4 and 3.8 μM; Y, 16.0 and 14.0 g · cells eq⁻¹; μ_max, 0.41 and 0.33 h⁻¹. Yield coefficients for denitrifying growth ranged from 40 to 70% of those for aerobic growth. Only A26 adhered to Monod kinetics with respect to growth on all three nitrogenous oxides. The apparent K_s values were 41, 270, and 460 μM for nitrous oxide, nitrate, and nitrite, respectively; the K_s for A28 grown on nitrate was 250 μM. The results are kinetically and thermodynamically consistent in explaining why O₂ is the preferred electron acceptor. Although no definitive conclusions could be drawn regarding preferential utilization of nitrogenous oxides, nitrite was inhibitory to both strains and effected slower growth. However, growth rates were identical (μ_max, 0.41 h⁻¹) when A26 was grown with either O₂ or NO₃⁻ as an electron acceptor and were only slightly reduced when A28 was grown with NO₃⁻ (0.25 h⁻¹) as opposed to O₂ (0.33 h⁻¹).     

Growth and Nitrogen Uptake Kinetics in Cultured Prorocentrum donghaiense

We compared growth kinetics of Prorocentrum donghaiense cultures on different nitrogen (N) compounds including nitrate (NO₃ ⁻), ammonium (NH₄ ⁺), urea, glutamic acid (glu), dialanine (diala) and cyanate. P. donghaiense exhibited standard Monod-type growth kinetics over a range of N concentraions (0.5–500 μmol N L⁻¹ for NO₃ ⁻ and NH₄ ⁺, 0.5–50 μmol N L⁻¹ for urea, 0.5–100 μmol N L⁻¹ for glu and cyanate, and 0.5–200 μmol N L⁻¹ for diala) for all of the N compounds tested. Cultures grown on glu and urea had the highest maximum growth rates (μ_m, 1.51±0.06 d⁻¹ and 1.50±0.05 d⁻¹, respectively). However, cultures grown on cyanate, NO₃ ⁻, and NH₄ ⁺ had lower half saturation constants (K_μ, 0.28–0.51 μmol N L⁻¹). N uptake kinetics were measured in NO₃ ⁻-deplete and -replete batch cultures of P. donghaiense. In NO₃ ⁻-deplete batch cultures, P. donghaiense exhibited Michaelis-Menten type uptake kinetics for NO₃ ⁻, NH₄ ⁺, urea and algal amino acids; uptake was saturated at or below 50 μmol N L⁻¹. In NO₃ ⁻-replete batch cultures, NH₄ ⁺, urea, and algal amino acid uptake kinetics were similar to those measured in NO₃ ⁻-deplete batch cultures. Together, our results demonstrate that P. donghaiense can grow well on a variety of N sources, and exhibits similar uptake kinetics under both nutrient replete and deplete conditions. This may be an important factor facilitating their growth during bloom initiation and development in N-enriched estuaries where many algae compete for bioavailable N and the nutrient environment changes as a result of algal growth.     

Microbial Methanogenesis and Acetate Metabolism in a Meromictic Lake

Methanogenesis and the anaerobic metabolism of acetate were examined in the sediment and water column of Knaack Lake, a small biogenic meromictic lake located in central Wisconsin. The lake was sharply stratified during the summer and was anaerobic below a depth of 3 m. Large concentrations (4,000 μmol/liter) of dissolved methane were detected in the bottom waters. A methane concentration maximum occurred at 4 m above the sediment. The production of ¹⁴CH₄ from ¹⁴C-labeled HCOOH, HCO₃⁻, and CH₃OH and [2-¹⁴C]acetate demonstrated microbial methanogenesis in the water column of the lake. The maximum rate of methanogenesis calculated from reduction of H¹⁴CO₃⁻ by endogenous electron donors in the surface sediment (depth, 22 m) was 7.6 nmol/h per 10 ml and in the water column (depth, 21 m) was 0.6 nmol/h per 10 ml. The methyl group of acetate was simultaneously metabolized to CH₄ and CO₂ in the anaerobic portions of the lake. Acetate oxidation was greatest in surface waters and decreased with water depth. Acetate was metabolized primarily to methane in the sediments and water immediately above the sediment. Sulfide inhibition studies and temperature activity profiles demonstrated that acetate metabolism was performed by several microbial populations. Sulfide additions (less than 5 μg/ml) to water from 21.5 m stimulated methanogenesis from acetate, but inhibited CO₂ production. Sulfate addition (1 mM) had no significant effect on acetate metabolism in water from 21.5 m, whereas nitrate additions (10 to 14,000 μg/liter) completely inhibited methanogenesis and stimulated CO₂ formation.     

Soil Nitrogen Status Modifies Rice Root Response to Nematode-Bacteria Interactions in the Rhizosphere

It has been hypothesized that faunal activity in the rhizosphere influences root growth via an auxin-dependent pathway. In this study, two methods were used to adjust nematode and bacterial populations within experimental soils. One is “exclusion”, where soil mixed with pig manure was placed in two bags with different mesh sizes (1mm and 5μm diameter), and then surrounded by an outer layer of unamended soil resulting in soil with a greater populations of bacterial-feeding nematodes (1mm) and a control treatment (5μm). The second method is “inoculation”, whereby autoclaved soil was inoculated with bacteria (E. coli and Pseudomonas) and Nematodes (Cephalobus and C. elegans). In order to detect the changes in the rice’s perception of auxin under different nutrient and auxin conditions in the presence of soil bacterial-feeding nematodes, responses of soil chemistry (NH₄⁺, NO₃^- and indole acetic acid (IAA)), rice root growth and the expression of an auxin responsive gene GH3-2 were measured. Results showed that, under low soil nutrient conditions (exclusion), low NO₃^- correlated with increased root branching and IAA correlated with increased root elongation and GH3-2 expression. However, under high soil nutrient conditions (inoculation), a high NH₄⁺ to NO₃^- ratio promoted an increase in root surface area and there was an additional influence of NH₄⁺ and NO₃^- on GH3-2 expression. Thus it was concluded that soil bacterial-feeding nematodes influenced soil nutritional status and soil IAA content, promoting root growth via an auxin dependent pathway that was offset by soil nitrogen status.     

The influence of chloride and other univalent inorganic anions on the visible-absorption spectrum of aspartate aminotransferase

1. The influence of Cl⁻, Br⁻, NO₃⁻ and F⁻ ions on the visible-absorption spectrum of deionized aspartate aminotransferase was investigated. 2. Except for F⁻, these anions caused an increase of the extinction at 430mμ with a concomitant decrease of that at 362mμ. 3. The affinity constants for Cl⁻ and NO₃⁻ ions were calculated by a procedure based on the assumption that the anion stabilizes the protonated form of the enzyme chromophore (λ_max. 430mμ). 4. The true pK of the chromophore of the enzyme was found to be 5·25.     

Atmospheric deposition, mass balances, and processes regulating streamwater solute concentrations in mixed-conifer catchments of the Sierra Nevada, California

Solute concentrations in atmospheric deposition and stream water were measuredfrom 1984 through 1993 to determine the fate and mobility of solutes in twogauged mixed-conifer catchments (Tharp's and Log creeks) located in theSierra Nevada, California. The two catchments contain mature forest standsdominated by Abies concolor (white fir), Sequoiadendron giganteum (giantsequoia), Abies magnifica (red fir) and Pinus lambertiana (sugar pine).Ammonium, Cl^-, Ca²⁺ and NO^- ₃were highest in concentration of the solutes measured in wet deposition;bulk deposition was highest in SO^{2- 4}, NH⁺ ₄,Cl^- and H⁺. Net retention ofH⁺, NO₃ ^-, NH₄ ⁺,SO₄ ^2- and Cl^- occurred in both catchments.Discharge was dominated by spring snowmelt with the largest export yieldsfor acid neutralizing capacity (ANC), SiO₂, andCa²⁺. Export yields of H⁺,NO₃ ^-, NH₄ ⁺ and PO₄ ^3-were relatively small (0.5 kg ha^-1 y^-1).Discharge-concentration relationships for ANC, SiO₂,Na⁺, K⁺, Ca²⁺ andMg²⁺ were inverse and their concentrations in stream waterwere primarily influenced by discharge and annual differences in the relativecontributions of snowmelt and groundwater. The mobility of these solutes iscontrolled by the rates of mineral weathering and ion exchange. The positiverelationship of SO₄ ^2- concentration with increasingdischarge suggests that atmospherically deposited SO₄ ^2-is temporarily stored and that its release is controlled by the extent of soilwater flushing.     

Microsensor Measurements of Sulfate Reduction and Sulfide Oxidation in Compact Microbial Communities of Aerobic Biofilms

The microzonation of O₂ respiration, H₂S oxidation, and SO₄^2- reduction in aerobic trickling-filter biofilms was studied by measuring concentration profiles at high spatial resolution (25 to 100 μm) with microsensors for O₂, S^2-, and pH. Specific reaction rates were calculated from measured concentration profiles by using a simple one-dimensional diffusion reaction model. The importance of electron acceptor and electron donor availability for the microzonation of respiratory processes and their reaction rates was investigated. Oxygen respiration was found in the upper 0.2 to 0.4 mm of the biofilm, whereas sulfate reduction occurred in deeper, anoxic parts of the biofilm. Sulfate reduction accounted for up to 50% of the total mineralization of organic carbon in the biofilms. All H₂S produced from sulfate reduction was reoxidized by O₂ in a narrow reaction zone, and no H₂S escaped to the overlying water. Turnover times of H₂S and O₂ in the reaction zone were only a few seconds owing to rapid bacterial H₂S oxidation. Anaerobic H₂S oxidation with NO₃^- could be induced by addition of nitrate to the medium. Total sulfate reduction rates increased when the availability of SO₄^2- or organic substrate increased as a result of deepening of the sulfate reduction zone or an increase in the sulfate reduction intensity, respectively.     

模拟SO42-沉降对闽江口淡水感潮野慈姑湿地甲烷排放通量的影响

2015年12月—2016年10月,每月小潮日原位定期向闽江口塔礁洲淡水感潮野慈姑(Sagittaria trifolia L.)湿地施加剂量为60、120 kg S hm~(-2)a~(-1)的K_2SO_4溶液(分别记做S-60和S-120),探讨模拟硫酸根(SO_4~(2-))沉降对河口淡水感潮湿地甲烷(CH4)排放通量及间隙水SO_4~(2-)浓度的影响。对照、S-60和S-120处理组CH_4排放通量年均值分别为(7.88±1.00)mg h~(-1)m~(-2)、(6.55±0.97)mg h~(-1)m~(-2)和(6.66±1.49)mg h~(-1)m~(-2)。在年尺度上,两个高强度模拟SO_4~(2-)沉降处理组均未显著降低闽江口淡水感潮野慈姑湿地CH_4排放通量(P0.05),即高强度SO_4~(2-)沉降不会对河口淡水感潮湿地CH_4排放通量产生类似于其对泥炭湿地和水稻田的显著抑制效应。在年尺度以及秋、冬季,两个施加K_2SO_4溶液处理显著增加了野慈姑湿地10 cm深度土壤间隙水SO_4~(2-)浓度。对于各个处理组,温度较高的夏、秋季CH_4排放通量均显著高于温度相对较低的冬、春季(P0.05)。不同处理组CH_4排放通量均与土壤温度呈显著正相关关系,温度仍然是影响亚热带河口淡水感潮湿地CH_4排放通量的重要环境因子。     

Steady-State Growth and Chemical Composition of the Marine Chlorophyte Dunaliella tertiolecta in Nitrogen-Limited Continuous Cultures

The marine chlorophyte Dunaliella tertiolecta was grown in continuous cultures under NH₄⁺-N, NO₂⁻-N, NO₃⁻-N, and urea-N limitations. The effect of the nitrogen cell quota (Q_n) on the steady-state growth rate (μ) was the same regardless of the N source. The relationship between μ and Q_n was well described by the Droop equation, but only up to the true maximum growth rate ^μ (= cell washout rate). The ratio between the minimum cell quota (k_Q) and the maximum cell quota (Q_m) was 0.19. Hence, there is no substitute for determining ^μ experimentally. That there was no difference in growth response to different N sources suggests that no internal pooling of inorganic nitrogen occurred. Both the carbon (Q_c) and phosphorus (Q_p) cell quotas under N limitation increased with increasing μ in a threshold fashion: virtually no change in either cell quota up to ~0.8 ^μ, followed by a rapid and large increase up to ^μ. In addition, in the region of low μ, there was an increase in Q_p with a decreasing medium N/P ratio of between 15 and 5 (by atoms). The results generally indicate the physiological limits in cellular constituency under N limitation. The usefulness of this information, however, in describing the response of natural populations of marine phytoplankton to transient nutrient exposures on the temporal and spatial microscales that most likely exist is of limited value.     

Simulation Model of the Coupling between Nitrification and Denitrification in a Freshwater Sediment

A model was constructed to simulate the results of experiments which investigated nitrification and denitrification in the freshwater sediment of Lake Vilhelmsborg, Denmark (K. Jensen, N. P. Sloth, N. Risgaard-Petersen, S. Rysgaard, and N. P. Revsbech, Appl. Environ. Microbiol. 60:2094-2100, 1994). The model output faithfully represented the profiles of O₂ and NO₃^- and rates of nitrification, denitrification, and O₂ consumption as the O₂ concentration in the overlying water was increased from 10 to 600 μM. The model also accurately predicted the response, to increasing O₂ concentrations, of the integrated (micromoles per square meter per hour) rates of nitrification and denitrification. The simulated rates of denitrification of NO₃^- diffusing from the overlying water (D_w) and of NO₃^- generated by nitrification within the sediment (D_n) corresponded to the experimental rates as the O₂ concentration in the overlying water was altered. The predicted D_w and D_n rates, as NO₃^- concentration in the overlying water was changed, closely resembled those determined experimentally. The model was composed of 41 layers 0.1 mm thick, of which 3 represented the diffusive boundary layer in the water. Large first-order rate constants for nitrification and denitrification were required to completely oxidize all NH₄⁺ diffusing from the lower sediment layers and to remove much of the NO₃^- produced. In addition to the flux of NH₄⁺ from below, the model required a flux of an electron donor, possibly methane. Close coupling between nitrification and denitrification, achieved by allowing denitrification to tolerate some O₂ (~10 μM), was necessary to reproduce the real data. Spatial separation of the two processes (no toleration by denitrification of O₂) resulted in too high NO₃^- concentrations and too low rates of denitrification.     

Mechanical threshold as a factor in excitation-contraction coupling

I^-, CH₃SO₄ ^-, and ClO₄ ^-, like other previously studied type A twitch potentiators (Br^-, NO₃ ^-, SCN^-, and caffeine), lower the mechanical threshold in K depolarization contractures of frog skeletal muscle. In potentiated twitches, I^-, Br^-, CH₃SO₄ ^-, ClO₄, and SCN, as already reported for NO₃ ^- and caffeine, slightly shorten the latent period (L) and considerably increase the rate of tension development (dP/dt) during the first few milliseconds of the contraction period. Divalent cations (8 mM Ca²⁺, 0.5–1.0 mM Zn²⁺ and Cd²⁺) raise the mechanical threshold of contractures, and correspondingly affect the twitch by depressing the tension output, increasing L, and decreasing the early dP/dt, thus acting oppositely to the type A potentiators. These various results form a broad, consistent pattern indicating that electromechanical coupling in the twitch is conditioned by a mechanical threshold as it is in the contracture, and suggesting that the lower the threshold, in reference to the raised threshold under the action of the divalent cations, the more effective is a given action potential in activating the twitch as regards especially both its early rate and peak magnitude of tension development. The results suggest that the direct action by which the various agents affect the level of the mechanical threshold involves effects on E-C coupling processes of the T tubular and/or the sarcoplasmic reticulum which control the release of Ca for activating contraction.