An offshore buoy as a small artificial island and a fish-aggregating device (FAD) in the Mediterranean

The ODAS Italia 1 oceanographic buoy is moored in the Ligurian Sea, 37 nm from Genoa, along the Genoa-Cape Corse transect (43° 48.90 N–09° 06.80 E), over a 1270 m deep sea bottom. The underwater portion of the buoy is 37 m long and 0.60 m in diameter, acting as a small island for colonization of fouling organisms and as a fish-aggregating device (FAD). The role of the buoy in attracting and maintaining fish assemblages was investigated by visual censuses in different seasons at depths of 0–40 m. Fish from seven families, comprising 12 species, of which three are benthic, were recorded with maximum abundance in summer. Fouling was studied from samples collected on the buoy and on immersed panels. The fouling community of the buoy consisted of 34 algae and 100 animal species, including three fish. The settlement processes of the fouling community on the panels, in particular on those exposed for over 70 months at 12 m and 33 m depth, are described based on counts of settled organisms, the covering index of each taxa and biomass assessments. On the panels, 63 species were identified. The fouling biomass, on the panel submerged for 70 months, assessed as wet weight, reached 2.8 kg/m² at 12 m depth and 4.8 kg/m² at 33 m depth.Observations of benthic organisms settled directly on the buoy were made between 1988 and 1989 and when the buoy was retrieved and brought back to shore on April 15, 1991 after 52 months at sea. At this time, the fouling community along the full 37 m length of the buoy was sampled, and 91 taxa, including 83 species, were identified. Several of the species present on the buoy are shallow, coastal species, some with a very short larval period. Possible ways of colonization by such species are discussed. Despite seasonal changes, the pelagic fish community was more stable over the period of 11 years of study than the benthic community settled on the buoy (that is still developing).     

Correlation of codon biases and potential secondary structures with mRNA translation efficiency in unicellular organisms

Gene expression is known to correlate with the degree of codon bias in many unicellular organisms. However, such a correlation is not observed in some organisms. It was demonstrated that inverted complementary repeats within coding DNA sequences (ORFs) should be considered for proper estimation of the translation efficiency because they can form secondary structures that obstruct ribosome movement. A program was developed for estimating the potential expression of ORFs in unicellular organisms on the basis of their genome sequences. The program computes the elongation efficiency index (EEI) and takes into account three key factors: codon bias, the average number of inverted complementary repeats, and the free energies of potential stem-loop structures formed by these repeats. The influence of these factors on translation was numerically estimated. Their optimal ratio was computed for each organism. EEIs of 384 unicellular organisms (351 bacteria, 28 archaea, and 5 eukaryotes) were computed using the annotated genomes available from GenBank. Five potential evolutionary strategies of translational optimization were determined in the organisms studied. A considerable difference in preferential translational strategies was observed between bacteria and archaea. Significant correlations between EEIs and gene expression levels were shown for two species (Saccharomyces cerevisiae and Helicobacter pylori), using the available microarray data. The method allows the numerical estimation of the translation efficiency of an ORF and optimization of the nucleotide composition of heterologous genes in specified unicellular organisms. The program is available at http://wwwmgs.bionet.nsc.ru/mgs/programs/eei-calculator.     

Genotypical differences among graminaceous species in release of phytosiderophores and uptake of iron phytosiderophores

Graminaceous species can enhance iron (Fe) acquisition from sparingly soluble inorganic Fe(III) compounds by release of phytosiderophores (PS) which mobilize Fe(III) by chelation. In most graminaceous species Fe deficiency increases the rate of PS release from roots by a factor of 10–20, but in some species, for example sorghum, this increase is much less. The chemical nature of PS can differ between species and even cultivars.The various PS are similarly effective as the microbial siderophore Desferal (ferrioxamine B methane sulfonate) in mobilizing Fe(III) from a calcareous soil. Under the same conditions the synthetic chelator DTPA (diaethylenetriamine pentaacetic acid) is ineffective.The rate of Fe(III)PS uptake by roots of graminaceous species increases by a factor of about 5 under Fe deficiency. In contrast, uptake of Fe from both synthetic and microbial Fe(III) chelates is much lower and not affected by the Fe nutritional status of the plants. This indicates that in graminaceous species under Fe deficiency a specific uptake system for FePS is activated. In contrast, the specific uptake system for FePS is absent in dicots. In a given graminaceous species the uptake rates of the various FePS are similar, but vary between species by a factor of upto 3. In sorghum, despite the low rate of PS release, the rate of FePS uptake is particularly high.The results indicate that release of PS and subsequent uptake of FePS are under different genetic control. The high susceptibility of sorghum to Fe deficiency (lime-chlorosis) is most probably caused by low rates of PS release in the early seedling stage. Therefore in sorghum, and presumably other graminaceous species also, an increase in resistance to lime chlorosis could be best achieved by breeding for cultivars with high rates of PS release. In corresponding screening procedures attention should be paid to the effects of iron nutritional status and daytime on PS release as well as on rapid microbial degradation of PS.     

Assessing the health of a zooplankton community in a small Precambrian Shield lake during recovery from experimental acidification

Acidified lakes recover chemically relatively quickly following the reduction or cessation of acidic inputs. Although fish, invertebrate, and phytoplankton communities are reported to begin to return to preacidification states in chemically-improving lakes, the process and extent of biological recovery are not well-documented. The experimental acidification of Precambrian Shield Lake 223 (27.4 ha surface area; 14.4 m maximum depth) in the Experimental Lakes Area in northwestern Ontario, provides an opportunity to compare the zooplankton community prior to acidification with that during progressive acidification and during chemical recovery. Acidified with sulfuric acid from pH 6.47 (ice-free season mean) in 1976 to pH 5.0 (1981 to 1983), Lake 223 has been allowed to recover in steps of pH 5.5 (1984 to 1987), pH 5.8 (1988 to 1990), and pH 6.11 (1991). Total zooplankton biomass showed no trend to increase or decrease during the acidification and recovery, but species composition changed. Compared with species composition at pH 6.13 early in acidification in 1977, the recovering community at pH 6.11 in 1991 had the previously-dominant cladoceran species present in very low numbers and had two newly-appearing cladoceran species. The community had lost one species of calanoid and gained none and lost two species of cyclopoids and gained two. It appeared to lose four species of rotifiers and gain seven. In nearby unmanipulated reference Lake 239 (56.1 ha; 30.4 m), species shifts were recorded but they involved rarer species, not dominants as in Lake 223. Although the zooplankton community in 1991 is in a new state with respect to species composition, static measures of total community biomass, contribution to biomass by the four main taxonomic groups, per cent smilarity to the preacidification community (for crustaceans), and biomass of herbivores do not indicate impairment of community health. Lowered species diversity for both crustaceans and rotifers partially returned to preacidification levels. Nevertheless, the rotifer community in 1991 was more dissimilar to the preacidification community than was the crustacean community, and carnivore biomass appeared to be depressed in Lake 223. The Lake 223 zooplankton community at pH 6.11 in 1991 appears to be in a state of flux.     

Freshwater protozoa: biodiversity and ecological function

The purpose of this article is to pull together various elements from current knowledge regarding the natural history of free-living protozoa in fresh waters. We define their functional role, set the likely limits of biodiversity, and explore how the two may be related. Protozoa are unicellular, phagotrophic organisms, and 16 phyla of protists contain free-living freshwater protozoan species. They are the most important grazers of microbes in aquatic environments and the only grazers of any importance in anoxic habitats. In sediments, ciliates are usually the dominant protozoans. Benthic ciliate biomass accounts for slightly less than 10% of total benthic invertebrate biomass, but ciliate production may equal or even exceed invertebrate production. Freshwater protozoan species are probably ubiquitous, although many may persist locally for long periods in a cryptic state – as potential rather than active biodiversity. As protozoa are among the largest and most complex of micro-organisms, it follows that bacteria and all other smaller, more numerous microbes are also ubiquitous. The number of protozoan species recorded in local surveys (232) is about 10% of the estimated global species richness (2390). The 'seedbank of protozoan (and microbial) species ensures that local microbial diversity is never so impoverished that it cannot play its full part in ecosystem functions such as carbon fixation and nutrient cycling.     

A unique surface membrane anchored purine-salvage enzyme is conserved among a group of primitive eukaryotic human pathogens

Previously, we isolated and characterized the gene encoding the 3-Nucleotidase/Nuclease (Ld3NT/NU) from the human pathogen, Leishmania donovani. This unique cell surface enzyme has been shown to be involved in the salvage of host-derived purines, which are essential for the survival of this important protozoan parasite. In this report, we assessed whether the 3-Nucleotidase/Nuclease was conserved amongst other pathogenic Leishmania and related trypanosomatid parasites. Results of pulsed field gel electrophoresis and Southern blotting showed that a Ld3NT/NU gene homolog was present in each of the visceral and cutaneous Leishmania species tested (i.e. isolates of L. donovani, L. infantum, L. tropica, L. major and L. mexicana, respectively). Further, results of colorimetric assays using 3-adenosine monophosphate as substrate demonstrated that each of these organisms also expressed significant levels of 3-nucleotidase enzyme activity. In addition, we showed that a Ld3NT/NU gene homolog was expressed in each of these Leishmania species as a > 40 kDa 3-nucleotidase enzyme activity. A Ld3NT/NU gene homolog was also identified in two Crithidia species (C. fasciculata and C. luciliae) and Leptomonas seymouri but was only marginally detectable in Trypanosoma brucei, Trypanosoma cruzi and Phytomonas serpens. Cumulatively, results of this study showed that an Ld3NT/NU homolog was conserved amongst pathogenic Leishmania sp. which suggests that this enzyme must play an critical role in purine salvage for all members of this group of human pathogens.     

Midwater trawl catches of adolescent and adult anguilliform fishes during the Sargasso Sea Eel Expedition 1979

During the research program on the biology and migration ofAnguilla spp. carried out with F.R.V. Anton Dohrn in 1979, approximately 1300 adolescent and adult anguilliform individuals were caught covering 8 families, 10 genera and 12 species. Observations on each of these species, including horizontal and vertical distributional patterns, are dealt with herein. The appearance of various species in hauls and the absence of adultAnguilla spp. in the catches obtained are discussed.     

Feeding Habits of Four Species of Istiophoridae (Pisces: Perciformes) from Northeastern Brazil

Billfishes from the Brazilian oceanic northeastern region feed on a large food spectrum composed mainly of epipelagic species of fish and cephalopods, with occasional occurrences of mesopelagic organisms and crustaceans. The oceanic pomfret, Brama brama, and the squid, Ornithoteuthis antillarum, were the main prey items in the diet of the four species, occurring in at least 50% of the stomachs containing food. There was no correlation between body length of prey and predator, or between mass of stomach content and body mass in the individuals from 100 to 330cm fork length. The feeding of the four species was characterized by constant ingestion of small quantities of food, and constant presence of food in the stomachs, with a predominance of epipelagic organisms of small sizes with an average of 8.0cm. The reduced stomach size forces the predators to feed constantly on several meals during the day, and consequently provide constant energy for migration.     

The role of the invertebrate fauna in the biological assessment of water quality

Summary Observations of a correlation between the distribution of certain aquatic invertebrate species and different water pollution levels are — perhaps contrary to the expectation — not very recent. One could even say that such observations are older than ecology itself; as early as 1848 it was correctly concluded that the absence of caddis larvae from a stream can be caused by the presence of a city upstream (KOLENATI, 1848). The term ecology was blended in 1866 by Ernst Haeckel, together with a definition of the field to be studied by this new science.In the last decades of the 19th century these observations were more and more assembled into systems and methods to estimate water pollution levels and in 1908–1909 a first elaborated scheme for biological water quality assessment was published, the well-known Saprobiensystem (KOLKWITZ and MARSSON, 1908; 1909). In this system the range of organic pollution is divided into four levels and for every level a list of characteristic organisms is given; the invertebrate fauna is represented, but is only a fraction of all listed species. On basis of later investigations new indicative species were added to the list (LIEBMANN, 1960; SLADECEK, 1973).While the system was used more and more widely, a marked disadvantage was noticed, especially with respect to the invertebrate fauna, since the Saprobiensystem is a result of research in running waters in Central Europe. When sampling in other types of water (e.g. stagnant) or other parts of Europe one can meet two problems: (a) relatively few of the sampled species will be mentioned in the system as a consequence of either the limited geographical distribution of most invertebrate species or their limitation to running water; (b) those species mentioned in the system may have another behaviour towards pollution in not-running (or otherwise different) waters.In the past twenty years several large sampling programs have resulted in better adapted systems to estimate water quality on basis of invertebrate fauna (WOODIWISS, 1964; TUFFERY, and VERNEAUX, 1967; MOLLER PILLOT, 1972). One may conclude that the problem of limited geographical distribution of indicative species can be solved by constructing different systems for zoogeographically too different regions. Too different means in this context so different that a saprobic system on the taxonomical level of the species cannot be suitable for both regions by sheer lack of common organisms. On a higher taxonomical level (genera or families) it may be possible to construct a system with a very broad applicability, but the degree of resolution with respect to pollution levels may not be very high in this case.The second problem-restriction of species to certain types of water-could be dealt with in a similar way,i.e. a Saprobiensystem for every type of water. The almost philosophical problem of defining what a type is, should be avoided for practical purposes by adopting a tractable number of easily recognizable types and accepting the fact that a saprobic system loses its applicability for the more extreme representatives of a type. Some types of water may be found, for instance large open water, where invertebrate fauna is not a very convenient group for water quality assessment. On the other hand, types of water where invertebrates are virtually the only group present also exist (glacier streams). In general the group seems to be highly suitable for the estimation of organic pollution in many kinds of surface water (limnosaprobity,sensu SLADECEK, 1973).Apart from saprobity there are some other properties of surface waters that can be faunistically detected and/or characterized. (a) Nutrient status (oligotrophic, eutrophic, etc.). However, invertebrate species with a clear preference for a specific nutrient level are not very numerous as compared to phytoplankton or macrophytes. (b) Integrity or other criteria to express the extent to which the potential biological richness of a geomorphologically defined type of water is realized. This can be important when an indication is wanted of the value of an aquatic ecotope as compared to other representatives of the type. Again, knowledge of the optimal biological development is needed as a reference, as in the case of a saprobic system.Thus, a typology or classification of types of water, accompanied by some sort of indication about the optimal (often natural) situation, would not be a purely scientific topic. A classification can serve as a basis for the monitoring as well as the evaluation of aquatic ecotopes (MOL, 1977; 1979). The large number of species and the vast geographical and typological distribution of aquatic invertebrates justifies the expectation that the group will play an important part in any biological classification of surface waters.     

Role of lipids in theNeurospora crassa membrane. I. Influence of fatty acid composition on membrane lipid phase transitions

Summary The relationship between lipid composition and phase transition was investigated by differential scanning calorimetry for intact and membrane phospholipid extracts of wild-type (w/t) and thecel ^– (Tw 40) mutant ofNeurospora crassa. Thecel ^– (Tw 40) mutant (grown on minimal, sucrose medium supplemented with Tween 40 at 34 °C) had approximately twice the saturated fatty acid content ofw/t organisms grown at 22 °C. The gel-liquid crystal phase transitions of ergosterol-free extracts derived fromw/t andcel ^– (Tw 40) occur at –31 and –11 °C, respectively. The heats of transition (H) of these extracts were 1 and 13 cal/g, respectively. The addition of ergosterol (the predominant sterol inNeurospora) to the phospholipid extracts decreased the observed heats of transition, but did not alter the transition temperature. IntactNeurospora, whetherw/t orcel ^– (Tw 40) did not manifest similar gel-liquid crystal phase transitions in the differential scanning calorimeter. However, an endothermic peak at approximately 30 °C was observed in intact cells and extracted phospholipids of bothw/t andcel ^– (Tw 40) organisms. This peak was insensitive to the addition of ergosterol, had a low heat content (H1 cal/g), and was reversible.     

Seasonal succession of phytoplankton in a lake of the Paraná river floodplain,Argentina

Phytoplankton biomass, morphological and taxonomic composition, species diversity and productivity were analyzed in a shallow lake of the Middle Paraná River floodplain (El Tigre, 31 ° 41 S and 60° 42 W), between November 1986 and July 1988. Lake inundation (filling and through-flow phases) constituted an intense long-term perturbation in the physical and chemical environment. As the lake filled with river water, K-selected species (netplanktonic filamentous bluegreens, > 37 µm, with low surface area/volume (SA/V) ratios) that had existed prior to filling (late spring 1986) were replaced in summer-fall by r-selected species (nannoplanktonic chlorophytes and cryptophytes, < 37 µm, mainly stout forms with high SA/V ratios). During the through-flow phase, lentic phytoplankton was replaced by lotic flagellate populations due to the direct flushing by river water. During the period of falling water (drainage and isolation phases), nanoplanktonic algae with similar characteristics to those of the filling phase dominated in late winter-spring. Later in the isolation phase, these were succeeded by K-selected species (netplanktonic algae, mainly motile spherical dinoflagellates and filamentous bluegreens with low SA/V ratios). Simultaneously, primary production per unit biomass decreased and total biomass and specific diversity increased. Seasonal changes of phytoplankton in floodplain lakes can be interpreted as the interaction between true successional development (as observed in the drainage and isolation phases) and intermediate disturbance. Using Reynolds' terminology, short-term disturbance (slight inflow of nutrient-rich river water) caused reversion to an earlier stage in the former succession, and long-term disturbance (lake inundation) truncated the successional progression and a new (or shifted) succession was initiated.     

Enhancement of forest canopy research,education, and conservation in the new millennium

Study of the forest canopy has reached a critical stage in its development from a young frontier area of study to a vibrant and coalescing field of investigation and communication. Many current environmental and social issues at global scales (e.g., environmental change, acid deposition, loss of biodiversity) are related directly to our knowledge of forest canopies. I present six activities that are needed to help the vibrant and growing field of forest canopy studies progress efficiently. Enabling canopy researchers to communicate with each other and with those outside our field is an important element to address these issues. The establishment of a graduate-level training program is also a high priority to generate and maintain a healthy discipline. Formal procedures to identify particular forest sites of critical concern should be initiated, and these should include communication of prioritized sites to conservation groups and policy makers. Instilling a sense of wonder and appreciation for organisms and interactions in non-scientists is another important avenue for forest canopy conservation.     

Macrozoobenthos of Lake Peipsi-Pihkva: taxonomical composition, abundance, biomass, and their relations to some ecological parameters

The large but shallow (3,558 km², up to 15.3 m deep) lake is eutrophic, with Chironomus plumosus and Potamothrix hammoniensis as dominating macroinvertebrates in the profundal. The extensive well-aerated sublittoral with sandy bottom sediments has a mesotrophic appearance and supports a diverse fauna with several oxyphilous species, including a very abundant population of Dreissena polymorpha. The phytophilous fauna is limited to small sheltered areas only. The average abundance of the small animals of macrozoobenthos (without big molluscs) was 2,617 ind. m^–2, their biomass 12.34 g m^–2 (corresponding to 52.2 kJ m^–2) in 1964–1994. The same figures for big molluscs (mostly Dreissena) were 304 ind. m^–2 and 238 g m^–2 in 1964–1994, and even 864 ind. m^–2 and 687 g m^–2 in 1985–1988, at the time of their special mapping. The sublittoral zone revealed the lowest biomass of small animals but the highest biomass of big molluscs. The southern, shallower lake regions, more enriched with nutrients and better protected from wind, revealed a significantly higher biomass of small macrozoobenthos in the near-shore zone than the cleaner and open northern part, while no positive effect of enrichment was observed neither in the biomass of profundal zoobenthos nor in that of big molluscs. The production of the small macrozoobenthos was calculated as 111 and 53 kJ m^–2 during two annual cycles in Lake Peipsi s. s., the most productive period being the autumn overturn. Lake Peipsi-Pihkva has the highest abundance and biomass of macrozoobenthos among the large lakes of North Europe.     

Sediment quality assessment: status and outlook

This paper is a synthesis of the 44 presentations at the First International Symposium on Sediment Quality Assessment (Sweden, August 1994). The paper includes Initial Premises, Sediments, Tools (with particular emphasis on bioassays), Strategies and Challenges. Major testable hypotheses are proposed as follows (ranging in complexity, recognizing differences apparent at the Symposium in level of expertise and knowledge): (1) there is no single perfect method of sediment assessment, there are only tools in the toolbox; (2) significant sediment pollution (contamination resulting in adverse biological effects) comes from non-anthropogenic sources; (3) artificial sediments will provide future reference comparisons; (4) knowledge of suspended sediments is required to understand bedded sediments; (5) ammonia and/or hydrogen sulfide cannot explain all sediment toxicity, in particular non-acute responses; (6) subcellular (e.g., genetic) responses are a research tool, not yet appropriate for monitoring or assessment; (7) although the effects of sediment storage cannot be predicted, non-toxic and highly toxic sediments are less affected by prolonged storage than are moderately toxic sediments; (8) sediment ingestion is a more important route of exposure than pore water for some organisms; (9) water column organisms and aqueous exposures should not be used for whole-organism sediment tests; (10) validation of sediment bioassays is not always simple or possible. Two major conclusions are: (i) generalizations are not [yet] possible regarding sediment quality; (ii) correctly assessing sediment quality is primarily a function of the correct reference comparison.     

Diversity and spatial pattern of coral communities in the Red Sea upper twilight zone

Summary This is the first study based on numerical analysis of the abundance of 11 scleractinian corals of depths at between 100–210 m in the Red Sea twilight zone. Two distinct coral communities were found: a Leptoseris fragilis community at a depth of 100–130 m (zone 1) and a Dendrophillia horsti community below 130 m (zone 2, 3). Population densities and coral coverage are very low; distribution of individuals is highly clumped. Highest observed densities on 100 m² were 2720 individuals for L. fraglis, 2720 for D. horsti and 2260 for Javania insignis. Calculated coverage rates were maximally 3.6% (L. fragilis), 0.08% (D. horsti) and 0.11% (J. insignis). L. fragilis, the only symbiont bearing coral, was very abundant. It has an unusual depth range for a photosynthesising coral. Coral density is only weakly correlated with hard bottom coverage. Species diversity with an average of 8 species is highest at 120–170 m and decreases in shallower and deeper water. The study depth range is a transient zone for coral distribution. It contains the upper distribution limits of a few deep sea corals and the lower ones of several shallower water species. Ahermatypic corals, collected at 160–170 m depth, were transplanted from their original depth to 159, 118, 70 and 40 m; after one year most species survived transplantation far beyond their upper distributional limits. The symbiotic L. fragilis, collected at 120 m, survived transplantation to deep water (159 m) as well as shallow zones (90, 70 and 40 m). The study demonstrates the feasibility of line-transect methods for coral community studies with a submersible.     

A practical approach to assess the native status of a rare plant species: the controverse of Buxus sempervirens L. in northern France revisited

Whether a species is native or introduced in a given geographic area is of major interest within the framewok of biological conservation. A practical approach combining phytosociological, ecological, phytogeographical and historical data is proposed to explore this status for rare plant species, and applied to Boxtree in northern France. Buxus sempervirens L. is an evergreen sub-mediterranean species whose wild populations in northern France are very rare and threatened. Its status – native or introduced – has long been be controversial. Three types of Box-woodland were found in the study area: 1) a Taxus baccata – Buxus sempervirens community which is strongly linked to post-Renaissance castles, 2) a Fraxinus excelsior–Mercurialis perennis community which may be related both to steep chalk slopes where Box was expected to be native and to Medieval castles, 3) a Quercus pubescens–Buxus sempervirens community which may be considered as an immature anthropogenic woodland. In all cases Buxus sempervirens was observed close to archaeological sites and together with exotic and/or nitrophilous plant species. Consequently Box is probably originally an introduced species in northern France and should be considered as both an archaeophyte and a feudal plant. This method offers an interesting alternative to determine the indigenity status of a rare plant species in its localities that would provide sufficiently accurate criteria in most of the cases.     

Plant community structure,connectance, niche limitation and species guilds within a dune slack grassland

Species phytomass in 40 mm×40 mm quadrats was used to examine community structure in four homogeneous areas of vegetation in sand dune slacks. There were from 9 to 16 common species in the samples, and most parameters of community structure were found to relate consistently to species number. We used covariance between all species at increasing dimensions of aggregations of quadrats to suggest that sociological interaction between species existed at scales of around 200 mm diameter. Generalised variance was of no help in this enquiry. We show that a connectance estimation arrived at from these parameters is, although a real feature of the analysis, apparently unrelated to connectance as understood in the food web literature. There is strong evidence that guild structure, sociological interaction and niche limitation increase with increasing number of species present, so that most diverse assemblage can be said to have a definite community structure.     

Effect of depth and reef structure on early macrobenthic communities of the Algarve artificial reefs (southern Portugal)

This study was carried out on the “Faro/Ancão” artificial reef (AR), located off Faro, deployed in May 2003. We aimed to characterise early macrobenthic community colonisation of two concrete AR groups located at different depths (16 m and 20 m depth) and to test the effect of reef structure on these communities. The non-colonial organisms were counted; barnacles and colonial species were quantified using biomass. Multivariate analyses indicated that early macrobenthic communities (6 months of immersion) were affected by depth, and that barnacles and colonial species were also affected by reef structure. Univariate analyses showed that the biomass of barnacles and colonial species was significantly different among reefs and layers of modules. Both AR groups were characterised by the species Balanus amphitrite, Gregariella subclavata, Musculus cf. subpictus, Paleanotus cf. bellis and Syllidia armata. Jassa marmorata and Bugula neritina were characteristic species at 16 m depth, particularly on the AR Upper layer of modules, whereas Anomia ephippium was particularly common at 20 m, especially on the Lower layer of modules.     

Identification of two Drosophila TGF-β family members in the grasshopper Schistocerca americana

Intercellular signaling molecules of the transforming growth factor- (TGF-) superfamily are required for pattern formation in many multicellular organisms. The decapentaplegic (dpp) gene of Drosophila melanogaster has several developmental roles. To improve our understanding of the evolutionary diversification of this large family we identified dpp in the grasshopper Schistocerca americana. S. americana diverged from D. melanogaster approximately 350 million years ago, utilizes a distinct developmental program, and has a 60-fold-larger genome than D. melanogaster. Our analyses indicate a single dpp locus in D. melanogaster and S. americana, suggesting that dpp copy number does not correlate with increasing genome size. Another TGF- superfamily member, the D. melanogaster gene 60A, is also present in only one copy in each species. Comparison of homologous sequences from D. melanogaster, S. americana, and H. sapiens, representing roughly 900 million years of evolutionary distance, reveals significant constraint on sequence divergence for both dpp and 60A. In the signaling portion of the dpp protein, the amino acid identity between these species exceeds 74%. Our results for the TGF- superfamily are consistent with current hypotheses describing gene duplication and diversification as a frequent response to high levels of selective pressure on individual family members.     

Scanning electron microscopy of the gut microflora of two earthworms: Lumbricus terrestris and Octolasion cyaneum

Scanning electron microscopy was used to investigate the presence of microorganisms, probably bacteria, on the gut surface of earthworms. The washed surfaces of the intestines of two earthworms, Lumbricus terrestris and Octolasion cyaneum, were examined. Numerous organisms resembling bacteria were observed throughout the gut, some in situations suggesting attachment. Compared with similar investigations in other invertebrates, there were fewer bacteria, showing less morphological diversity, on the earthworm gut surface. The majority of organisms viewed were coccoid, some were filamentous, and a few rod-shaped cells were observed. Cocci, often in chains, were seen in the foregut of both species. Although cocci were also numerous in the midgut region, particularly in the typhlosole, in O. cyaneum tufts of segmented, filamentous organisms were also seen with some segments resembling spores. Fewer organisms were found in the hindgut, but in L. terrestris there were segmented, filamentous organisms, attached to the epithelium by way of a socket-like structure, similar to that by which segmented, filamentous bacteria (SFBs) are attached to the ileum of rats and mice. Transmission electron microscopy of the hindgut of L. terrestris was undertaken to explore the structure and attachment of SFBs to the gut epithelium. However, although a few rod-shaped bacteria were observed, no SFBs were located. The observations reported here provide evidence that earthworms have an attached gut microflora of filamentous microorganisms which are probably indigenous, and as far as we are aware this is the first published report of such findings in these invertebrates. Offprint requests to: J.M. Jolly.