Evidence of two genetic clusters of manatees with low genetic diversity in Mexico and implications for their conservation

The Antillean manatee (Trichechus manatus manatus) occupies the tropical coastal waters of the Greater Antilles and Caribbean, extending from Mexico along Central and South America to Brazil. Historically, manatees were abundant in Mexico, but hunting during the pre-Columbian period, the Spanish colonization and throughout the history of Mexico, has resulted in the significantly reduced population occupying Mexico today. The genetic structure, using microsatellites, shows the presence of two populations in Mexico: the Gulf of Mexico (GMx) and Chetumal Bay (ChB) on the Caribbean coast, with a zone of admixture in between. Both populations show low genetic diversity (GMx: N_A = 2.69; H_E = 0.41 and ChB: N_A = 3.0; H_E = 0.46). The lower genetic diversity found in the GMx, the largest manatee population in Mexico, is probably due to a combination of a founder effect, as this is the northern range of the sub-species of T. m. manatus, and a bottleneck event. The greater genetic diversity observed along the Caribbean coast, which also has the smallest estimated number of individuals, is possibly due to manatees that come from the GMx and Belize. There is evidence to support limited or unidirectional gene flow between these two important areas. The analyses presented here also suggest minimal evidence of a handful of individual migrants possibly between Florida and Mexico. To address management issues we suggest considering two distinct genetic populations in Mexico, one along the Caribbean coast and one in the riverine systems connected to the GMx.     

Phylogeography and Sex-Biased Dispersal across Riverine Manatee Populations (Trichechus inunguis and Trichechus manatus) in South America

Phylogeographic patterns and sex-biased dispersal were studied in riverine populations of West Indian (Trichechus manatus) and Amazonian manatees (T. inunguis) in South America, using 410bp D-loop (Control Region, Mitochondrial DNA) sequences and 15 nuclear microsatellite loci. This multi-locus approach was key to disentangle complex patterns of gene flow among populations. D-loop analyses revealed population structuring among all Colombian rivers for T. manatus, while microsatellite data suggested no structure. Two main populations of T. inunguis separating the Colombian and Peruvian Amazon were supported by analysis of the D-loop and microsatellite data. Overall, we provide molecular evidence for differences in dispersal patterns between sexes, demonstrating male-biased gene flow dispersal in riverine manatees. These results are in contrast with previously reported levels of population structure shown by microsatellite data in marine manatee populations, revealing low habitat restrictions to gene flow in riverine habitats, and more significant dispersal limitations for males in marine environments.     

Tactile discrimination of textures by Florida manatees (Trichechus manatus latirostris)

Two male Florida manatees (Trichechus manatus latirostris) demonstrated sensitive tactile discrimination in a two‐alternative forced choice task, using a modified staircase method. Stimuli were acrylic plates with vertical gratings of ridges and grooves. The standard stimulus, present on every trial, had 2 mm gratings and the comparison stimuli had wider gratings. The blindfolded subjects were trained to demonstrate discrimination by pressing the target with wider gratings. Discrimination thresholds (75% correct) for the subjects were 2.05 mm and 2.15 mm, corresponding to Weber fractions of 0.025 and 0.075, respectively. These results indicate thresholds on similar stimuli comparable to humans (index finger tasks) and better than harbor seals, Phoca vitulina, and the closely related Antillean manatee, Trichechus manatus manatus. Memory for the tactile task was quite stable for both subjects, over 2 yr in the case of one of the subjects. Video analysis of responses indicated that bristle‐like hairs, perioral bristles, and skin on the oral disk were involved in the discrimination response.     

The heart of the dugong (Dugong dugon) and the west indian manatee (Trichechus manatus) (Sirenia)

Thirty-eight dugong (Dugong dugon) hearts and 28 Florida manatee (Trichechus manatus) hearts were obtained from stranding programs in Australia and the United States. In addition to a double ventricular apex, a feature that has astonished scientists since the eighteenth century, the hearts of both animals have a double subvalvular conus and a dorsal left atrium. The heart lies in a vertical plane at right angles to that of the completely dorsal, symmetrical lungs. The dugong heart has a deeper interventricular cleft and a more conical left ventricle. The latter features may be part of a general morphological trend toward specialization for a more energetic aquatic existence. The presence of a bulbous ascending aorta in the manatee but not in the dugong is without explanation.     

Cover

ON THE COVER: Underwater photo showing luxurious growth of the obligately epizoic red alga Melanothamnus maniticola Woodworth, Frankovich & Freshwater sp. nov. on a West Indian Manatee (Trichechus manatus). This species has developmentally different rhizoids that are unique within Melanothamnus and may be an evolutionary adaptation for anchoring the thalli to manatee epidermis. Photo courtesy of Cathy Beck, USGS.     

The existence value of the Antillean manatee in the unprotected Hondo River (Mexico) as a fundamental component for its conservation

The Hondo River is the natural border between Mexico and Belize, and it is part of the distribution area of the Endangered Antillean manatee Trichechus manatus manatus. Currently, the Hondo River does not have any special protection. Employing qualitative research methods, we documented the social perception and local knowledge from riverside communities to assess conservation status and trends of manatees in the area. Fifty semi-structured interviews were carried out to river users in 16 Mexican communities, distributed in six segments along the riverbed. The claims of the inhabitants agree with boat-based surveys: most of the current and historical manatee sightings were reported in segments of the main watercourses, but also in small tributaries, which are usually shallow and rich in aquatic vegetation. Additionally, the local perception about manatee conservation status can be helpful to understand population trends and threats: 48 % of the interviewees claimed that nowadays the number of sighted manatees is less than that observed 10 years ago. The responders identified water pollution due to cane cultivation practices, motorized vessels traffic, and presence of fishing nets as potential threats to manatees. This study provides evidence of relevant local knowledge about the manatee ecology and its habitat, critical in the construction of binational conservation strategies for the species. Therefore, local resources users may play an increasingly significant role in manatee management and monitoring. Although manatees are poached for their meat in several areas of their distribution, the most common value attributed to manatees in Hondo River was non-use existence values. Local people recognize the challenges to observe this cryptic species in this river, but also identified manatees as potential flag species, suggesting that it may represent a valuable resource for ecotourism. We suggest that the non-extractive use of manatees has the potential for promoting species conservation and local economic growth.     

Phylogeography, phylogeny and hybridization in trichechid sirenians: implications for manatee conservation

Abstract The three living species of manatees, West Indian (Trichechus manatus), Amazonian (Trichechus inunguis) and West African (Trichechus senegalensis), are distributed across the shallow tropical and subtropical waters of America and the western coast of Africa. We have sequenced the mitochondrial DNA control region in 330 Trichechus to compare their phylogeographic patterns. In T. manatus we observed a marked population structure with the identification of three haplotype clusters showing a distinct spatial distribution. A geographic barrier represented by the continuity of the Lesser Antilles to Trinidad Island, near the mouth of the Orinoco River in Venezuela, appears to have restricted the gene flow historically in T. manatus. However, for T. inunguis we observed a single expanding population cluster, with a high diversity of very closely related haplotypes. A marked geographic population structure is likely present in T. senegalensis with at least two distinct clusters. Phylogenetic analyses with the mtDNA cytochrome b gene suggest a clade of the marine Trichechus species, with T. inunguis as the most basal trichechid. This is in agreement with previous morphological analyses. Mitochondrial DNA, autosomal microsatellites and cytogenetic analyses revealed the presence of hybrids between the T. manatus and T. inunguis species at the mouth of the Amazon River in Brazil, extending to the Guyanas and probably as far as the mouth of the Orinoco River. Future conservation strategies should consider the distinct population structure of manatee species, as well as the historical barriers to gene flow and the likely occurrence of interspecific hybridization.     

Does the Manatee Have a Pineal Body?

The brain of an adult, female manatee (Trichechus manatus) was prepared for histological examination of the region of the diencephalon and mesencephalon, where the pineal body typically would be located. Careful examination of hematoxylin-eosin stained, interrupted serial microtomy sections revealed that this animal has a tubular epiphyseal recess apparently lacking organic pineal differentiation. There was no cytological evidence of pinealocytes in the vicinity of the atypical pineal rudiment.     

Ecogeographical patterns of morphological variation in pygmy shrews Sorex minutus (Soricomorpha: Soricinae) within a phylogeographical and continental‐and‐island framework

Ecogeographical patterns of morphological variation were studied in the Eurasian pygmy shrew Sorex minutus aiming to understand the species’ morphological diversity in a continental and island setting, and within the context of previous detailed phylogeographical studies. In total, 568 mandibles and 377 skulls of S. minutus from continental and island populations from Europe and Atlantic islands were examined using a geometric morphometrics approach, and the general relationships of mandible and skull size and shape with geographical and environmental variables were studied. Samples were then pooled into predefined geographical groups to evaluate the morphological differences among them using analyses of variance, aiming to contrast the morphological and genetic relationships based on morphological and genetic distances and ancestral state reconstructions, as well as assess the correlations of morphological, genetic, and geographical distances with Mantel tests. We found significant relationships of mandible size with geographical and environmental variables, fitting the converse Bergmann's rule; however, for skull size, this was less evident. Continental groups of S. minutus could not readily be differentiated from each other by shape. Most island groups of S. minutus were easily discriminated from the continental groups by being larger, indicative of an island effect. Moreover, morphological and genetic distances differed substantially and, again, island groups were distinctive morphologically. Morphological and geographical distances were significantly correlated, although this was not the case for morphological and genetic distances, indicating that morphological variation does not reflect genetic subdivision in S. minutus. Our analyses showed that environmental variables and insularity had important effects on the morphological differentiation of S. minutus.     

Physical and morphological aspects of the eye of the manatee trichechus inunguis natterer 1883: (Sirenia: Mammalia)

The eyes and aspects of vision of the Amazonian manatee Trichechus inunguis NATTERER 1883: (Sirenia: mammalia) have been examined in five animals, in relation to previous findings for sirenians. This paper presents a review of previous findings confirming those upon gross ocular anatomy, retinal histology and ocular refraction. The confirmation of a primarily rod retina, high receptor: ganglion cell ratio and low refractive error under water were of note. A visual pigment based upon vitamin A₁ and a difference spectrum of λ max at 505 nm was in agreement with Dartnalls nomogram. The findings suggest a retina more suited to low light levels and at best, moderate visual acuity, though motion perception appears present and a low degree of binocular vision possible.     

Habitat, Niche, and Evolution of Sirenian Mating Systems

Lek polygyny, monogamy and scramble promiscuity have been reported in the two families and five species of Recent sirenians. Evidence for lek mating in the dugong or "sea pig" (Dugong dugon), monogamy in Steller's sea cow (Hydrodamalis gigas), and scramble promiscuity in the three manatees or "river cows" (Trichechus manatus, Trichechus senegalensis, and Trichechus inunguis), as well as in one dugong population, is reviewed. Sirenians are long-lived "K-strategists" with precocious young, few potential young per female lifetime, high female investment in a few young, little apparent opportunity for post-copulatory male investment, and "paenungulate" reproductive physiologies that appear to increase uncertainty as to female receptivity and assurance as to paternity. Common features notwithstanding, diverse habitats, climates, and niches may account for mating system diversity. Scenarios for evolution of diverse mating systems, based on our understanding of mating systems in terrestrial herbivores, are presented. The dugong retains the ancestral low latitude marine, seagrass dependent, bottom-feeding, niche characteristic of diverse, tusked, Oligocene and Miocene sirenian faunas. With a long breeding season and high polygyny potential, retention of tusks by male dugongs in the absence of any foraging function suggests that tusks may have always had social functions and lekking may be of ancient origin. The sea cow lineage, isolated on the shoreline of the northeastern Pacific as seagrasses declined, turned to surface foraging on chemically undefended kelps and lost both tusks and molar teeth. As it followed kelps northwards, adaptation to a cold-temperate climate compressed the breeding season, limited the polygyny potential, and, in conjunction with incentives for paternal investment, favored pair bonding and the monogamous mating system postulated by George Steller (1751). Manatees, evolving in botanically-rich fresh waters of the Amazon basin as an aberrant offshoot of the marine dugongid line, remained in the tropics and retained a high polygyny potential, but became generalist foragers in the upper few meters of the water column. Labyrinthine river systems provided little opportunity for male aggregation and display (or rhizome foraging) and tusks were lost as the uncertainty of female inseminability drove the mating system toward scramble promiscuity and sperm competition. An observation of manatee-like behavior in a dense and sedentary dugong population in eastern Australia suggests plasticity in sirenian mating, and the likelihood that a form of scramble promiscuity may exist where no suitable site for lekking is available, where large group size makes female defence impossible, or where vulnerability of territorial males to hunting has resulted in extirpation of a lekking tradition. Dugong and manatee life history characteristics conform to expectations based on observed differences in mating systems.     

Anatomy of the cecum of the West Indian manatee,Trichechus manatus (Mammalia,Sirenia)

Summary The anatomy of the cecum of the West Indian manatee (Trichechus manatus) is described at the macroscopic and microscopic levels. The cecum possesses a voluminous corpus ceci with two lateral outpocketings; two diverticulae (cecal horns) extend from the corpus at the vicinity of the ileocecal junction. An ampulla ceci is found distal to the corpus ceci, the two compartments communicating via a wide-opened orifice. The most striking microscopic finding is the mucosal covering of a keratinized stratified squamous epithelium overlying the crypts of Lieberkühn.An attempt is made to interpret the morphological observations in terms of the functional digestive process in the manatee, giving alternative suggestions concerning the significance of the cecum and colon in the nutritional status of the manatee.Abbreviations A Ampulla ceci - CC Corpus ceci - CH Cecal horns - I Ileum - C Colon The present investigation was supported by a grant from the Deutsche Forschungsgemeinschaft (La 325/7-1)The author is greatly indebted to the members of the Fish and Wildlife Service, Sirenia Project, Gainesville Station, Gainesville Florida: special thanks are extended to Dr. Thomas O'Shea for organizing this undertaking, to Cathy A. Beck and Robert K. Bonde for their generous hospitality, for allowing the author to participate in the salvaging project, which they carried out with great efficiency, and for help in collecting the material. Without this aid, this study could not have been completed     

Circadian and ultradian activity rhythms in manatee (Trichechus manatus manatus) in captivity

In this study, we show temporal organization of activity patterns in larger temporal series recording. The objective of this study was to determine the temporal pattern of the rest-activity rhythm in manatee (Trichechus manatus manatus) in captivity. Activity recordings were programmed from August 2010 to September 2011 with actimetry devices, and behavior recordings were conducted in dry and rainy seasons. We showed that the marine manatee presents a complex temporal organization, in which the rest-activity rhythm comprises several frequencies with a predominant circadian component and multiple ultradian components. Our results indicate that the animals were more active during the day with respect to the night. The temporal organization of this cycle entails multiple frequencies that include ultradian rhythms, which may be expressions generated by physiological needs, such as food availability and thermoregulatory requirements. These patterns should be taken into consideration for future studies of biological rhythms in manatee.     

Phylogeography of the West Indian manatee (Trichechus manatus): how many populations and how many taxa?

To resolve the population genetic structure and phylogeography of the West Indian manatee ( Trichechus manatus ), mitochondrial (mt) DNA control region sequences were compared among eight locations across the western Atlantic region. Fifteen haplotypes were identified among 86 individuals from Florida, Puerto Rico, the Dominican Republic, Mexico, Colombia, Venezuela, Guyana and Brazil. Despite the manatee's ability to move thousands of kilometres along continental margins, strong population separations between most locations were demonstrated with significant haplotype frequency shifts. These findings are consistent with tagging studies which indicate that stretches of open water and unsuitable coastal habitats constitute substantial barriers to gene flow and colonization. Low levels of genetic diversity within Florida and Brazilian samples might be explained by recent colonization into high latitudes or bottleneck effects. Three distinctive mtDNA lineages were observed in an intraspecific phylogeny of T. manatus , corresponding approximately to: (i) Florida and the West Indies; (ii) the Gulf of Mexico to the Caribbean rivers of South America; and (iii) the northeast Atlantic coast of South America. These lineages, which are not concordant with previous subspecies designations, are separated by sequence divergence estimates of d = 0.04–0.07, approximately the same level of divergence observed between T. manatus and the Amazonian manatee ( T. inunguis , n = 16). Three individuals from Guyana, identified as T. manatus , had mtDNA haplotypes which are affiliated with the endemic Amazon form T. inunguis . The three primary T. manatus lineages and the T. inunguis lineage may represent relatively deep phylogeographic partitions which have been bridged recently due to changes in habitat availability (after the Wisconsin glacial period, 10 000 BP ), natural colonization, and human-mediated transplantation.     

USING TREND INDICES FOR ENDANGERED SPECIES

Initial appraisals of the status of endangered large-mammal populations may have to depend on indices of population trend. Such indices may possibly be improved by using auxiliary variables. Various models were studied for populations of the Florida manatee (Trichechus manatus latirostris), Yellowstone grizzly bear (Ursus arctos horribilis), and Hawaiian monk seal (Monachus schauinslandi). Several criteria for checking validity of the fitted models were considered, and the simple R² criterion appears to provide useful comparisons. Multiple regression models overestimated the rate of change of the East Coast manatee population as determined from three other sources (a covariance model, a non-linear model, and the rate estimated from reproductive and survival data). A multiple regression model for grizzly bears using three auxiliary variables exhibited a fairly high R² (0.84) and appeared to provide a better fit than did a non-linear model. A beach count index for Hawaiian monk seals seemed to be unreliable for year-to-year comparisons in contrast to total population counts and estimates from a capture-recapture method. The use of auxiliary variables for checking and improving trend index data appears feasible and well worthwhile.     

Environment and space as drivers of variation in skull shape in two widely distributed South‐American Tayassuidae,Pecari tajacu and Tayassu pecari (Mammalia: Cetartiodactyla)

The influence of the environment on the geographical variation of morphological traits has been recognized in a number of taxa. Pecari tajacu and Tayassu pecari are ideal models to investigate intraspecific geographic variation in skull because of their wide and heterogeneous geographical distribution in South America. We used geometric morphometric procedures to examine the geographical variation in skull shape of 294 adult specimens of these species from 134 localities. We quantified to what extent skull shape variation was explained by environment, skull size and geographical space using variation partitioning analysis. We detected a strong pattern of geographic variation for P. tajacu skull shape, but not for T. pecari. The environment seems to be the major selective force that drives skull shape variation in both species. Nevertheless, other spatially structured processes (e.g. genetic drift, gene flow) might also have affected variation in the skull shape of the more widespread species P. tajacu. Allometric relationships might reflect the biomechanical constraints that are thought to be strong enough to limit size‐related changes in T. pecari skull shape.     

Morphological and genetic evidence for two evolutionarily significant units (ESUs) in the South American fur seal, <Emphasis Type="Italic">Arctocephalus gazella</Emphasis>

The South American fur seal (Arctocephalus australis) is widely distributed, occurring along both the Atlantic and the Pacific coasts of South America. Previous work suggests there may be more than one subspecies, highlighting the need for further study. Here, we combine traditional and geometric morphometric analysis of skull shape and size with genetic data to compare two populations of South American fur seals, one from Uruguay and one from Peru. As a control group we used material from the closely related species Arctocephalus gazella. Both techniques of morphometric analysis reveal pronounced geographic variation in size and shape of the skull, with Peruvian specimens (n = 102) being larger than Uruguayan skulls (n = 133) and significant shape differences concentrated in the rostral region. Similarly, seven highly polymorphic microsatellite loci reveal highly significant differences in allele frequency. Moreover, Bayesian analysis implemented using the program structure reveals two separate clusters corresponding perfectly to the two populations, with an assignment test correctly placing over 98% of specimens in their population of origin. This degree of differentiation for both genetic and morphological traits suggests complete and possibly prolonged isolation to the extent that we believe these populations should be considered distinct evolutionarily significant units.     

Comparative ontogenetic shape changes in the skull of Caiman species (Crocodylia,Alligatoridae)

Ontogenetic shape changes in the skull of three species of the genus Caiman (C. latirostris, C. sclerops, and C. yacare) are compared by geometric morphometrics for three-dimensional configurations (the least-squares analysis). The technique for obtaining the landmark coordinates is a simplification of the algorithm for multidimensional scaling. The ontogenetic nonlinear shape changes are similar in the three species but occur in a lesser extent in C. latirostris. These seem to be correlated with functional changes in the skull. The uniform shape change corresponds to an elongation of the skull, dorsoventral flattening, and lateral compression in C. sclerops and C. yacare. There is some lateral broadening in C. latirostris. Differences in the ontogenetic processes probably cause the differences in diet observed between C. latirostris and the other two species. Neotenic evolution seems to have acted in the skull of C. latirostris, and a posterior amplification of the early divergence led to a repatterning of the shape ontogenetic trajectory in this species. J. Morphol. 231:53–62, 1997. © 1997 Wiley-Liss, Inc.     

Don’t let me down: West Indian manatee,Trichechus manatus,is still critically endangered in Brazil

Sirenians have a unique ecological function in coastal ecosystems, deserving special conservation attention. The West Indian manatee (Trichechus manatus) is globally classified as Vulnerable by the IUCN. In Brazil, where the species was intensively hunted in the past and currently faces several threats, it was classified as Endangered during the last national assessment published in 2014. Here, we generated information based on available data to assess the species extinction risk in Brazil using IUCN regional guidelines, applying all criteria, and choosing the highest category of risk. Abundance at the national level was projected considering the density estimated in Ceará and Rio Grande do Norte states and the Criterion B EOO (Extent of Occurrence) estimated in this study (34,899 km²) and resulted in 1,047 individuals (95% CI: 538–2,038). Six scenarios of annual mortality were inferred and suspected based on evidence. We adopted a simple discrete logistic growth model to project population reduction in the past and future (three generations − 69 years) in 18 scenarios. Among the 18 projected scenarios, four resulted in extinction, six in decline and eight in population growth. Considering the low abundance bound, all scenarios indicate a reduction larger than 80% in population size, classifying the species as ‘Critically Endangered’ based on A4de. Reduction in EOO and abundance in the past classify the species as ‘Endangered’ based on A2c. The suspected number of mature animals (607;95% CI: 312–1,182) and the projected decline higher than 20% in two generations also classify the species as ‘Endangered’ based on C1 and ‘Vulnerable’ under D1. Our results indicate that information can be generated to produce more accurate assessments based on available data. The species national extinction risk needs to be reassessed, and the National Action Plan effectiveness evaluated.