Gene Regulatory Network Interactions in Sea Urchin Endomesoderm Induction

A major goal of contemporary studies of embryonic development is to understand large sets of regulatory changes that accompany the phenomenon of embryonic induction. The highly resolved sea urchin pregastrular endomesoderm–gene regulatory network (EM-GRN) provides a unique framework to study the global regulatory interactions underlying endomesoderm induction. Vegetal micromeres of the sea urchin embryo constitute a classic endomesoderm signaling center, whose potential to induce archenteron formation from presumptive ectoderm was demonstrated almost a century ago. In this work, we ectopically activate the primary mesenchyme cell–GRN (PMC-GRN) that operates in micromere progeny by misexpressing the micromere determinant Pmar1 and identify the responding EM-GRN that is induced in animal blastomeres. Using localized loss-of -function analyses in conjunction with expression of endo16, the molecular definition of micromere-dependent endomesoderm specification, we show that the TGFβ cytokine, ActivinB, is an essential component of this induction in blastomeres that emit this signal, as well as in cells that respond to it. We report that normal pregastrular endomesoderm specification requires activation of the Pmar1-inducible subset of the EM-GRN by the same cytokine, strongly suggesting that early micromere-mediated endomesoderm specification, which regulates timely gastrulation in the sea urchin embryo, is also ActivinB dependent. This study unexpectedly uncovers the existence of an additional uncharacterized micromere signal to endomesoderm progenitors, significantly revising existing models. In one of the first network-level characterizations of an intercellular inductive phenomenon, we describe an important in vivo model of the requirement of ActivinB signaling in the earliest steps of embryonic endomesoderm progenitor specification.     

Excluded volume of an intermediate-molecular-weight DNA. A Monte Carlo analysis

A Monte Carlo procedure wasused to determine the effect of excluded volume on the dimensions of an intermediate-molecular-weight DNA for different Na⁺ concentrations. The calculation of α, the parameter for the linear expansion due to excluded volume, was accomplished by generating sets of chains and, for each set, comparing the average radius of gyration for the set of chains that do not overlap to that averaged over the entire set of chains. Each chain was defined by cylinders linked with free rotation and with bend angles generated according to a weighted Gaussian distribution. The chain parameters—contour lenght, cylinder lenght and diameter—were fixed in order to resemble published light-scattering experiments on Col E₁ DNA. Values for α were less than 1.08. for Na⁺ concentrations between 0.007 and 1.0M. A previously reported analytical calculation of the excluded-volume correction of intermediate-sized DNA gave results that are closely similar to those from the Monte Carlo analysis.     

Micromechanics of Sea Urchin Spines

The endoskeletal structure of the Sea Urchin, Centrostephanus rodgersii, has numerous long spines whose known functions include locomotion, sensing, and protection against predators. These spines have a remarkable internal microstructure and are made of single-crystal calcite. A finite-element model of the spine’s unique porous structure, based on micro-computed tomography (microCT) and incorporating anisotropic material properties, was developed to study its response to mechanical loading. Simulations show that high stress concentrations occur at certain points in the spine’s architecture; brittle cracking would likely initiate in these regions. These analyses demonstrate that the organization of single-crystal calcite in the unique, intricate morphology of the sea urchin spine results in a strong, stiff and lightweight structure that enhances its strength despite the brittleness of its constituent material.     

A Century of Sea Urchin Development

SYNOPSIS. In the last quarter of the nineteenth century severalinvestigators including Richard and Oskar Hertwig, Theodor Boveri,Hans Driesch, Curt Herbst, T. H. Morgan and others turned theirattention to sea urchin eggs and early embryos. This favorablecombination of outstanding investigators and the sea urchinembryo as an experimental organism contributed to a fundamentalunderstanding of the cell, fertilization and heredity. The advantagesof the sea urchin continued to be recognized as experimentalembryologists used these embryos to develop the concepts ofgradients, regulative development and inductive interactions.Then, as developmental biology arose from chemical embryology,the sea urchin embryo once again emerged as an ideal experimentalanimal, pivotal in the understanding of the molecular and developmentalbiology of eukaryotic organisms.     

Developmental Expression of Echinonectin, an Endogenous Lectin of the Sea Urchin Embryo

Echinonectin (EN) is a galactose-binding lectin present in eggs and embryos of the sea urchin Lytechinus variegatus . Recent studies have suggested that EN is a hyaline layer protein that may function as a substrate adhesion molecule (SAM) during development. We have used monoclonal and affinity-purified polyclonal antibodies that specifically recognize this protein to determine its spatial and temporal expression during embryogenesis. EN is stored in granules or vesicles in the unfertilized egg. After fertilization, these granules are rapidly redistributed to the apical cytoplasm of the zygote. Our results show that at subsequent stages of development the lectin is expressed by cells of all three germ layers, including cells of the developing gut, coelomic pouches, and ectoderm, and by both primary and secondary mesenchyme cells. In contrast to previous observations based solely upon light level immunofluorescent staining, immunoelectron microscopy demonstrates that EN is localized in intracellular, membrane-bounded vesicles. In epithelial cell types these vesicles have a highly polarized distribution and are found in the apical cortical cytoplasm. In mesenchyme cells the distribution of EN-containing vesicles is not obviously polarized. Steady-state levels of EN protein in the embryo remain almost constant from fertilization to the pluteus larva stage, Metabolic labeling studies show that synthesis of EN in L. variegatus begins immediately after fertilization and continues throughout embryogenesis. Monospecific antibodies raised against L. variegatus EN have also been used to determine whether this lectin is expressed in other echinoid species.     

Monte Carlo Vadose Zone Model for Soil Remedial Criteria

Many vadose zone models are available for environmental remediation, but few offer the procedures for verifying model predictions with field data and for dealing with uncertainties associated with model input parameters. This article presents a modified model combining a one-dimensional vadose-zone transport model and a simple groundwater mixing model with a function of Monte Carlo simulation (MCS). The modified model is applied to determine soil remedial concentrations for methyl tertiary butyl ether (MTBE). The modified model generates a distribution of MTBE ground-water concentrations at the point of compliance. This distribution can be used to estimate the risk of exceeding groundwater quality standard given soil remedial concentrations. In a case study, soil remedial concentration for MTBE is established to be 5?µg/kg, with a 95% and 10?µg/kg with a 50% probability that groundwater concentration will not exceed the water quality objective of 13?µg/L. Furthermore, this study uses MCS to investigate uncertainties of model input parameter hydraulic conductivity (K). One set of data (K1) is based on the results of hydraulic conductivity laboratory tests, and the other (K2) is based on the results of slug tests conducted in the field. As expected, the laboratory data show smaller K values than the field data. The comparison of the MCS results obtained from the two sets of K data indicates that the MTBE groundwater concentrations calculated based on K1 are generally 160 to 625% greater than those calculated based on K2 at the same percentiles of the MCS distribution. A higher soil remedial concentration of9jig/kg is then calculated based on the MCS results from K2 at 95%ile and 19?µg/kg at 50%ile.     

Elastic Properties of the Sea Urchin Sperm Flagellum

The theory of flexural vibrations in thin rods, applied to the movement of flagella, has been extended to include an investigation of the influence of the boundary conditions on the theoretical waveforms. It was found that for flagella which are flexible enough, the flexibility can be estimated solely from the wavelength of the wave traveling in it. This can be expected to hold for those flagella which do not possess a fibrous sheath. The bending moment in flagella in which the ampitude of the wave is maintained as the wave travels distally is almost completely produced by active contractile elements. This means that the active bending moment can be estimated from the radius of curvature of the flagellum and the stiffness. The above findings were applied to the case of the sea urchin sperm flagellum. One finds that the stiffness of the flagellum is caused mainly by the nine longitudinal fibers which must have a Young's modulus of slightly less than 10⁸dyne/cm². The longitudinal fibers need to develop a tension of 1.6 × 10⁸dyne/cm² to account for the bending moment in the flagellum. These two figures are in line with those found for muscle fibers.     

Mannan-Binding Lectin of the Sea Urchin Strongylocentrotus nudus

A novel lectin specific to low-branched mannans (MBL-SN) was isolated from coelomic plasma of the sea urchin Strongylocentrotus nudus by combining anion-exchange liquid chromatography on DEAE Toyopearl 650 M, affinity chromatography on mannan-Sepharose and gel filtration on the Sephacryl S-200. The molecular mass of MBL-SN was estimated by sodium dodecyl sulphate polyacrylamide gel electrophoresis under non-reducing conditions to be about 34 kDa. MBL-SN was shown to be a dimer with two identical subunits of about 17 kDa. The native MBL-SN exists as a tetramer. The physico-chemical properties of MBL-SN indicate that it belongs to C-type mannan-binding lectins. The cDNA encoding MBL-SN was cloned from the total cDNA of S. nudus coelomocytes and encodes a 17-kDa protein of 144 amino acid residues that contains a single carbohydrate-recognition domain of C-type lectins. Prediction of the MBL-SN tertiary structure using comparative modelling revealed that MBL-SN is an α/β-protein with eight β-strands and two α-helices. Comparison of the MBL-SN model with available three-dimensional structures of C-type lectins revealed that they share a common fold pattern.     

Bayesian phylogeny analysis via stochastic approximation Monte Carlo

Monte Carlo methods have received much attention in the recent literature of phylogeny analysis. However, the conventional Markov chain Monte Carlo algorithms, such as the Metropolis–Hastings algorithm, tend to get trapped in a local mode in simulating from the posterior distribution of phylogenetic trees, rendering the inference ineffective. In this paper, we apply an advanced Monte Carlo algorithm, the stochastic approximation Monte Carlo algorithm, to Bayesian phylogeny analysis. Our method is compared with two popular Bayesian phylogeny software, BAMBE and MrBayes, on simulated and real datasets. The numerical results indicate that our method outperforms BAMBE and MrBayes. Among the three methods, SAMC produces the consensus trees which have the highest similarity to the true trees, and the model parameter estimates which have the smallest mean square errors, but costs the least CPU time.     

A Monte Carlo analysis of neutron-produced single event spectra

Summary It is shown how the shape of neutron-produced single event spectra for spherical cavities varies with sphere diameter and neutron energy. This variation is due to the changing contributions of the most frequently produced secondary particles to the different regions of the total single event spectrum. The latter is shown on the basis of single event spectra of protons,¹²C-,¹⁴N- and¹⁶O-recoils, which have been calculated using the Monte Carlo method.     

On the analysis of microbiological processes by Monte Carlo simulation techniques

The Barcelonagram is a Monte Carlo simulator recently designedin order to take account of the behaviour of living systems.In this paper we apply this technique to real bacterial growthin different and significant experimental conditions, namely(i) the growth of the Serratia marcescens in a minimal glucose-limitedmedium, (ii) the temperature effect on the anaerobic growthof the same strain, (iii) the growth of the Escherichia coliin a minimal medium and (iv) the normal specific growth rateof bacterial populations against the available substrate concentration.In the context of these different cases we discuss the diversecontributions of these simulated results to the understandingof the microbiological processes and the general reliabilityof the simulation considered as a third alternative besidesboth (and together with!) experience and mathematical modelling. Received on August 31, 1988; accepted on June 6, 1989     

Electric Field-induced Fusion of Sea Urchin Eggs

An electrical method is described which permits the fusion of denuded eggs of the sea urchin species Paracentrotus lividus . In a nearly non-conductive medium, containing 1.2 M glucose at pH 6.0–8.4, eggs or fertilized stages are brought into close membrane contact by dielectrophoresis arising from the application of a highly inhomogeneous alternating electric field. During this process the eggs aligne parallel to the field forming egg-chains. In well pigmented eggs pigmentcapping is observed in the areas of cell contact. After completion of the alignment, the application of an additional single high field pulse of μs duration induces fusion of two or more eggs. The mechanism underlying the fusion process is the reversible electric breakdown of membranes in the zones of cell-to-cell contact. Fusion proceeds within 1–10 min at 10–20°C. Fused eggs have intact nuclei, can be fertilized, but undergo abortive cleavage.     

海胆Runx基因的研究进展

海胆Runx(Runt box)基因是Runx基因家族的成员之一,在海胆的胚胎发育、细胞的增殖和分化过程中起重要的作用.海胆Runx基因表达的缺失或下调,将会影响其它相关基因的表达,进而影响胚胎的正常发育.综述了海胆Runx基因的研究进展.     

Dimorphism of Spermatozoa in the Sea Urchin Strongylocentrotus nudus

A phenomenon of dimorphism in spermatozoa has been revealed for the sea urchin Strongylocentrotus nudus. The spermatozoa are different in the configuration of the circular mitochondrion. The bulk of male gametes (73.4%) have a symmetrical mitochondrion, whereas the remainder spermatozoa (26.6%) have an asymmetrical one. No other ultrastructural differences in the structure of spermatozoa have been revealed. The two types of spermatozoa are supposed to represent different kinds of normal gametes capable of fertilization.     

DNA Polymerase Potentials of Sea Urchin Embryos

THE possible involvement of RNA-instructed DNA polymerase in differentiation has been proposed by Temin¹. Here we present evidence that partially purified polymerase fractions prepared from 16-cell sea urchin embryos, which can undergo normal development through gastrulation, are able to support RNA-directed, as well as the expected DNA-directed, DNA synthesis. The results reported lead us to suggest that the observed RNA-instructed DNA synthesis may be mediated by polymerases other than that responsible for DNA-dependent DNA synthesis.     

High Throughput Microinjections of Sea Urchin Zygotes

Microinjection into cells and embryos is a common technique that is used to study a wide range of biological processes. In this method a small amount of treatment solution is loaded into a microinjection needle that is used to physically inject individual immobilized cells or embryos. Despite the need for initial training to perform this procedure for high-throughput delivery, microinjection offers maximum efficiency and reproducible delivery of a wide variety of treatment solutions (including complex mixtures of samples) into cells, eggs or embryos. Applications to microinjections include delivery of DNA constructs, mRNAs, recombinant proteins, gain of function, and loss of function reagents. Fluorescent or colorimetric dye is added to the injected solution to enable instant visualization of efficient delivery as well as a tool for reliable normalization of the amount of the delivered solution. The described method enables microinjection of 100-400 sea urchin zygotes within 10-15 min.     

The Reaggregation of Dissociated Embryonic Sea Urchin Cells

Studies carried out on reaggregating sea urchin embryonic cellsreveal that reaggregating cells can give rise to normal pluteuslarvae by three developmental pathways: (i) from clusters, (ii)from chains of beads, and (iii) from a tissue culture phase.Experiments carried out on a mixture of cells from two differentspecies, Arbacia punctulata and Lytechinus pictus, demonstratethat reaggregation is species specific and that the sortingout of cells according to species occurs. Movement of cellswithin an aggregate is non-random and unidirectional. Electronmicroscope analysis of mixed aggregates of cells of the twospecies indicates that cells of the same species make initialcontact and adhere to one another by means of numerous microvilliand with the formation of an intercellular hyaline-like material.Cells of the two different species adhere, but never by meansof microvilli and no hyaline-like material can be detected onthe cell surfaces. The results indicate a role in reaggregationof an intercellular material, possibly an intercellular cement.     

海胆主要卵黄蛋白研究进展

海胆的主要卵黄蛋白(major yolk protein,MYP)大量存在于海胆卵中,同时存在于海胆精巢和卵巢中,为配子发生及胚胎发育提供营养.经比对发现,海胆MYP cDNA序列与其他物种卵黄蛋白原并无明显相似性,而与铁传递蛋白具有更高的相似性,有研究认为MYP为铁传递蛋白.据其存在场所和合成时期的差异,MYP可分为为CFMYP(存在于体腔内,受精后合成)和EGMYP(存在于卵中,母源性),二者均由同一基因编码.就CFMYP和EGMYP合成时期、场所和功能作用等加以比较;并对海胆MYP与其他物种卵黄蛋白(原)发生、结构与分子量和功能等方面进行了综述.