Effect of fragmentation on the community structure of epixylic bryophytes in Atlantic Forest remnants in the Northeast of Brazil

The effects of fragmentation and edge effects on the floristic composition, richness, diversity and abundance of epixylic bryophytes (growing on decaying wood) were investigated in ten fragments of Atlantic Forest remnants in the Northeast of Brazil. In each fragment, four perpendicular 100 m transects were demarcated. Along these transects, samples of bryophytes growing on decaying wood were collected. The forest fragments were grouped in three size classes (small: <100 ha; medium: 100–500 ha; large: >500 ha). Correlation and multivariate analysis were undertaken between bryophyte flora and fragment metrics (size, form, isolation, altitude variation, nuclear area and secondary vegetation percentage and distance from the edge). A total of 99 species of bryophytes, 52 liverworts and 47 mosses were registered. The statistical results confirming fragment size is an important factor in epixylic community structure. Therefore, composition, richness, diversity and abundance can be better explained by a junction of all studied landscape factors. Bryophyte richness, the percentage of samples with the greatest coverage of decaying wood and shade-tolerant species’ distribution, were not correlated to distance from the forest edge. This suggests that edge effects are not linear or can be detected beyond 100 m from the edge, which is very important for inclusion in future studies.     

Modeling decay rates of dead wood in a neotropical forest

Variation of dead wood decay rates among tropical trees remains one source of uncertainty in global models of the carbon cycle. Taking advantage of a broad forest plot network surveyed for tree mortality over a 23-year period, we measured the remaining fraction of boles from 367 dead trees from 26 neotropical species widely varying in wood density (0.23–1.24 g cm⁻³) and tree circumference at death time (31.5–272.0 cm). We modeled decay rates within a Bayesian framework assuming a first order differential equation to model the decomposition process and tested for the effects of forest management (selective logging vs. unexploited), of mode of death (standing vs. downed) and of topographical levels (bottomlands vs. hillsides vs. hilltops) on wood decay rates. The general decay model predicts the observed remaining fraction of dead wood (R ² = 60%) with only two biological predictors: tree circumference at death time and wood specific density. Neither selective logging nor local topography had a differential effect on wood decay rates. Including the mode of death into the model revealed that standing dead trees decomposed faster than downed dead trees, but the gain of model accuracy remains rather marginal. Overall, these results suggest that the release of carbon from tropical dead trees to the atmosphere can be simply estimated using tree circumference at death time and wood density.     

Relationships among wood‐boring beetles,fungi, and the decomposition of forest biomass

A prevailing paradigm in forest ecology is that wood‐boring beetles facilitate wood decay and carbon cycling, but empirical tests have yielded mixed results. We experimentally determined the effects of wood borers on fungal community assembly and wood decay within pine trunks in the southeastern United States. Pine trunks were made either beetle‐accessible or inaccessible. Fungal communities were compared using culturing and high‐throughput amplicon sequencing (HTAS) of DNA and RNA. Prior to beetle infestation, living pines had diverse fungal endophyte communities. Endophytes were displaced by beetle‐associated fungi in beetle‐accessible trees, whereas some endophytes persisted as saprotrophs in beetle‐excluded trees. Beetles increased fungal diversity several fold. Over forty taxa of Ascomycota were significantly associated with beetles, but beetles were not consistently associated with any known wood‐decaying fungi. Instead, increasing ambrosia beetle infestations caused reduced decay, consistent with previous in vitro experiments that showed beetle‐associated fungi reduce decay rates by competing with decay fungi. No effect of bark‐inhabiting beetles on decay was detected. Platypodines carried significantly more fungal taxa than scolytines. Molecular results were validated by synthetic and biological mock communities and were consistent across methodologies. RNA sequencing confirmed that beetle‐associated fungi were biologically active in the wood. Metabarcode sequencing of the LSU/28S marker recovered important fungal symbionts that were missed by ITS2, though community‐level effects were similar between markers. In contrast to the current paradigm, our results indicate ambrosia beetles introduce diverse fungal communities that do not extensively decay wood, but instead reduce decay rates by competing with wood decay fungi.     

Traits mediate drought effects on wood carbon fluxes

CO₂ fluxes from wood decomposition represent an important source of carbon from forest ecosystems to the atmosphere, which are determined by both wood traits and climate influencing the metabolic rates of decomposers. Previous studies have quantified the effects of moisture and temperature on wood decomposition, but these effects were not separated from the potential influence of wood traits. Indeed, it is not well understood how traits and climate interact to influence wood CO₂ fluxes. Here, we examined the responses of CO₂ fluxes from dead wood with different traits (angiosperm and gymnosperm) to 0%, 35%, and 70% rainfall reduction across seasonal temperature gradients. Our results showed that drought significantly decreased wood CO₂ fluxes, but its effects varied with both taxonomical group and drought intensity. Drought‐induced reduction in wood CO₂ fluxes was larger in angiosperms than gymnosperms for the 35% rainfall reduction treatment, but there was no significant difference between these groups for the 70% reduction treatment. This is because wood nitrogen density and carbon quality were significantly higher in angiosperms than gymnosperms, yielding a higher moisture sensitivity of wood decomposition. These findings were demonstrated by a significant positive interaction effect between wood nitrogen and moisture on CO₂ fluxes in a structural equation model. Additionally, we ascertained that a constant temperature sensitivity of CO₂ fluxes was independent of wood traits and consistent with previous estimates for extracellular enzyme kinetics. Our results highlight the key role of wood traits in regulating drought responses of wood carbon fluxes. Given that both climate and forest management might extensively modify taxonomic compositions in the future, it is critical for carbon cycle models to account for such interactions between wood traits and climate in driving dynamics of wood decomposition.     

Effects of harvesting on spatial and temporal diversity of carbon stocks in a boreal forest landscape

Carbon stocks in managed forests of Ontario, Canada, and in harvested wood products originated from these forests were estimated for 2010–2100. Simulations included four future forest harvesting scenarios based on historical harvesting levels (low, average, high, and maximum available) and a no‐harvest scenario. In four harvesting scenarios, forest carbon stocks in Ontario's managed forest were estimated to range from 6202 to 6227 Mt C (millions of tons of carbon) in 2010, and from 6121 to 6428 Mt C by 2100. Inclusion of carbon stored in harvested wood products in use and in landfills changed the projected range in 2100 to 6710–6742 Mt C. For the no‐harvest scenario, forest carbon stocks were projected to change from 6246 Mt C in 2010 to 6680 Mt C in 2100. Spatial variation in projected forest carbon stocks was strongly related to changes in forest age (r = 0.603), but had weak correlation with harvesting rates. For all managed forests in Ontario combined, projected carbon stocks in combined forest and harvested wood products converged to within 2% difference by 2100. The results suggest that harvesting in the boreal forest, if applied within limits of sustainable forest management, will eventually have a relatively small effect on long‐term combined forest and wood products carbon stocks. However, there was a large time lag to approach carbon equality, with more than 90 years with a net reduction in stored carbon in harvested forests plus wood products compared to nonharvested boreal forest which also has low rates of natural disturbance. The eventual near equivalency of carbon stocks in nonharvested forest and forest that is harvested and protected from natural disturbance reflects both the accumulation of carbon in harvested wood products and the relatively young age at which boreal forest stands undergo natural succession in the absence of disturbance.     

Factors affecting fall down rates of dead aspen (Populus tremuloides) biomass following severe drought in west‐central Canada

Increases in mortality of trembling aspen (Populus tremuloides Michx.) have been recorded across large areas of western North America following recent periods of exceptionally severe drought. The resultant increase in standing, dead tree biomass represents a significant potential source of carbon emissions to the atmosphere, but the timing of emissions is partially driven by dead‐wood dynamics which include the fall down and breakage of dead aspen stems. The rate at which dead trees fall to the ground also strongly influences the period over which forest dieback episodes can be detected by aerial surveys or satellite remote sensing observations. Over a 12‐year period (2000–2012), we monitored the annual status of 1010 aspen trees that died during and following a severe regional drought within 25 study areas across west‐central Canada. Observations of stem fall down and breakage (snapping) were used to estimate woody biomass transfer from standing to downed dead wood as a function of years since tree death. For the region as a whole, we estimated that >80% of standing dead aspen biomass had fallen after 10 years. Overall, the rate of fall down was minimal during the year following stem death, but thereafter fall rates followed a negative exponential equation with k = 0.20 per year. However, there was high between‐site variation in the rate of fall down (k = 0.08–0.37 per year). The analysis showed that fall down rates were positively correlated with stand age, site windiness, and the incidence of decay fungi (Phellinus tremulae (Bond.) Bond. and Boris.) and wood‐boring insects. These factors are thus likely to influence the rate of carbon emissions from dead trees following periods of climate‐related forest die‐off episodes.     

Radial Gradients in Wood Specific Gravity,Water and Gas Content in Trees of a Mexican Tropical Rain Forest

Cell walls, water, and gas that have mechanical and physiological functions in wood, and wood specific gravity (WSG) is related to demographic traits. To understand variation in wood structure and function, we analyzed radial changes in WSG, in the gas and the water fractions from trees growing in four different habitats in a southern Mexican rain forest. Mean WSG was 0.55 ± 0.16, slightly lower than reported for other tropical forests. In 27 species, WSG decreased and in two species, it increased from pith to bark with a strong (r² = 0.65) negative correlation between WSG in the center of the tree and the radial WSG gradient. Habitat had some effect on mean WSG and trees growing on karst had significantly higher WSG than the same species growing on alluvial soil. The cell wall, water, and gas fractions accounted for 35 percent (range: 16–50), 42 percent (28–65), and 23 percent (2–56), respectively, of wood volume, with a negative correlation between the gas and the cell wall and between the gas and the water fractions, but not between the cell wall and water fractions. Radially increasing WSG is advantageous for pioneer trees with fast initial growth. We found that the water displacement method may result in biased WSG estimates. To increase the accuracy of WSG data, we suggest to measure sample volume geometrically using a constant diameter (that of the borer tip), to include radial variation in WSG, and to consider for possible site effects on species‐specific WSG.     

Assessing edge effect on the spatial distribution of selected forest biochemical properties derived using the Worldview data in Dukuduku forests,South Africa

This work explores the potential of the high‐resolution WorldView‐2 sensor in quantifying edge effects on the spatial distribution of selected forest biochemical properties in fragmented Dukuduku forest in KwaZulu‐Natal, South Africa. Specifically, we sought to map fragmented patches within forested areas in Dukuduku area, using very high spatial resolution WorldView‐2 remotely sensed data and to statistically determine the effect of these fragmented patches on the spatial distribution of selected forest biochemical properties. Edge effects on carbon, LAI and foliar nitrogen were quantified based on the models derived by Omer et al. (IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 2015, 8, 4825). Edge effect statistical results on the spatial distribution of carbon, LAI and nitrogen showed significant (α = 0.05) variations with change in distance from fragmented patches (>150 m²). Forest foliar carbon concentrations significantly (p‐value = 0.016) increased from 44.8% to 45.3% with increasing distance (25–375 m) from fragmented patches. A similar trend was observed for LAI. Nevertheless, for nitrogen the results show that its concentration significantly (p = 0.016) decreased with increase in distance from the fragmented patches. Overall, the findings of this work underscore the invaluable potential and strength of WorldView‐2 data set in assessing edge effect on the spatial distribution of selected forest biochemical properties.     

Carbon flux from decomposing wood and its dependency on temperature,wood N2 fixation rate,moisture and fungal composition in a Norway spruce forest

Globally 40–70 Pg of carbon (C) are stored in coarse woody debris on the forest floor. Climate change may reduce the function of this stock as a C sink in the future due to increasing temperature. However, current knowledge on the drivers of wood decomposition is inadequate for detailed predictions. To define the factors that control wood respiration rate of Norway spruce and to produce a model that adequately describes the decomposition process of this species as a function of time, we used an unprecedentedly diverse analytical approach, which included measurements of respiration, fungal community sequencing, N₂ fixation rate, nifH copy number, ¹⁴C‐dating as well as N%, δ¹³C and C% values of wood. Our results suggest that climate change will accelerate C flux from deadwood in boreal conditions, due to the observed strong temperature dependency of deadwood respiration. At the research site, the annual C flux from deadwood would increase by 27% from the current 117 g C/kg wood with the projected climate warming (RCP4.5). The second most important control on respiration rate was the stage of wood decomposition; at early stages of decomposition low nitrogen content and low wood moisture limited fungal activity while reduced wood resource quality decreased the respiration rate at the final stages of decomposition. Wood decomposition process was best described by a Sigmoidal model, where after 116 years of wood decomposition mass loss of 95% was reached. Our results on deadwood decomposition are important for C budget calculations in ecosystem and climate change models. We observed for the first time that the temperature dependency of N₂ fixation, which has a major role at providing N for wood‐inhabiting fungi, was not constant but varied between wood density classes due to source supply and wood quality. This has significant consequences on projecting N₂ fixation rates for deadwood in changing climate.     

The extent of edge effects in fragmented landscapes: Insights from satellite measurements of tree cover

Due to deforestation, intact tropical forest areas are increasingly transformed into a mixture of remaining forest patches and human modified areas. These forest fragments suffer from edge effects, which cause changes in ecological and ecosystem processes, undermining habitat quality and the offer of ecosystem services. Even though detailed and long term studies were developed on the topic of edge effects at local scale, understanding edge effect characteristics in fragmented forests on larger scales and finding indicators for its impact is crucial for predicting habitat loss and developing management options. Here we evaluate the spatial and temporal dimensions of edge effects in large areas using remote sensing. First we executed a neighborhood pixel analysis in 11 LANDSAT Tree Cover (LTC) scenes (180 × 185 km each, 8 in the tropics and 3 in temperate forested areas) using tree cover as an indicator of habitat quality and in relation to edge distance. Second, we executed a temporal analysis of LTC in a smaller area in the Brazilian Amazon forest where one larger forest fragment (25,890 ha) became completely fragmented in 5 years. Our results show that for all 11 scenes pixel neighborhood variation of LTC is much higher in the vicinity of forest edges, becoming lower towards the forest interior. This analysis suggests a maximum distance for edge effects and can indicate the location of unaffected core areas. However, LTC patterns in relation to fragment edge distance vary according to the analyzed region, and maximum edge distance may differ according to local conditions. Our temporal analysis illustrates the change in tree cover patterns after 5 years of fragmentation, becoming on average lower close to the edge (between 50 and 100 m). Although it is still unclear which are the main causes of LTC edge variability within and between regions, LANDSAT Tree Cover could be used as an accessible and efficient discriminator of edge and interior forest habitats in fragmented landscapes, and become invaluable for deriving qualitative spatial and temporal information of ecological and ecosystem processes.     

Dispersal capacity of Monochamus galloprovincialis,the European vector of the pine wood nematode,on flight mills

The pine wood nematode (Bursaphelenchus xylophilus), which causes the symptoms of pine wilt disease, is recognized worldwide as a major forest pest. It was introduced into Portugal in 1999. It is transmitted between trees almost exclusively by longhorn beetles of the genus Monochamus, including, in particular, M. galloprovincialis (Coleoptera: Cerambycidae) in maritime pine forests. Accurate estimates of the flight capacity of this insect vector are required if we are to understand and predict the spread of pine wilt disease in Europe. Using computer‐linked flight mills, we evaluated the distance flown, the flight probability and speed of M. galloprovincialis throughout adulthood and investigated the effects of age, sex and body weight on these flight performances, which are proxies for dispersal capacity. The within‐population variability of flight performance in M. galloprovincialis was high, with a mean distance of 16 km flown over the lifetime of the beetle. Age and body weight had a significant positive effect on flight capacity, but there was no difference in performance between males and females. These findings have important implications for managing the spread of the pine wood nematode in European forests.     

The Effects of Permafrost Thaw on Soil Hydrologic, Thermal, and Carbon Dynamics in an Alaskan Peatland

Recent warming at high-latitudes has accelerated permafrost thaw in northern peatlands, and thaw can have profound effects on local hydrology and ecosystem carbon balance. To assess the impact of permafrost thaw on soil organic carbon (OC) dynamics, we measured soil hydrologic and thermal dynamics and soil OC stocks across a collapse-scar bog chronosequence in interior Alaska. We observed dramatic changes in the distribution of soil water associated with thawing of ice-rich frozen peat. The impoundment of warm water in collapse-scar bogs initiated talik formation and the lateral expansion of bogs over time. On average, Permafrost Plateaus stored 137 ± 37 kg C m⁻², whereas OC storage in Young Bogs and Old Bogs averaged 84 ± 13 kg C m⁻². Based on our reconstructions, the accumulation of OC in near-surface bog peat continued for nearly 1,000 years following permafrost thaw, at which point accumulation rates slowed. Rapid decomposition of thawed forest peat reduced deep OC stocks by nearly half during the first 100 years following thaw. Using a simple mass-balance model, we show that accumulation rates at the bog surface were not sufficient to balance deep OC losses, resulting in a net loss of OC from the entire peat column. An uncertainty analysis also revealed that the magnitude and timing of soil OC loss from thawed forest peat depends substantially on variation in OC input rates to bog peat and variation in decay constants for shallow and deep OC stocks. These findings suggest that permafrost thaw and the subsequent release of OC from thawed peat will likely reduce the strength of northern permafrost-affected peatlands as a carbon dioxide sink, and consequently, will likely accelerate rates of atmospheric warming.     

Assessing the response of forest productivity to climate extremes in Switzerland using model–data fusion

The response of forest productivity to climate extremes strongly depends on ambient environmental and site conditions. To better understand these relationships at a regional scale, we used nearly 800 observation years from 271 permanent long‐term forest monitoring plots across Switzerland, obtained between 1980 and 2017. We assimilated these data into the 3‐PG forest ecosystem model using Bayesian inference, reducing the bias of model predictions from 14% to 5% for forest stem carbon stocks and from 45% to 9% for stem carbon stock changes. We then estimated the productivity of forests dominated by Picea abies and Fagus sylvatica for the period of 1960–2018, and tested for productivity shifts in response to climate along elevational gradient and in extreme years. Simulated net primary productivity (NPP) decreased with elevation (2.86 ± 0.006 Mg C ha^?1 year^?1 km^?1 for P. abies and 0.93 ± 0.010 Mg C ha^?1 year^?1 km^?1 for F. sylvatica). During warm–dry extremes, simulated NPP for both species increased at higher and decreased at lower elevations, with reductions in NPP of more than 25% for up to 21% of the potential species distribution range in Switzerland. Reduced plant water availability had a stronger effect on NPP than temperature during warm‐dry extremes. Importantly, cold–dry extremes had negative impacts on regional forest NPP comparable to warm–dry extremes. Overall, our calibrated model suggests that the response of forest productivity to climate extremes is more complex than simple shift toward higher elevation. Such robust estimates of NPP are key for increasing our understanding of forests ecosystems carbon dynamics under climate extremes.     

Carbon debt repayment or carbon sequestration parity? Lessons from a forest bioenergy case study in Ontario,Canada

Forest bioenergy can contribute to climate change mitigation by reducing greenhouse gas (GHG) emissions associated with energy production. We assessed changes in GHG emissions resulting from displacement of coal with wood pellets for the Atikokan Generating Station located in Northwestern Ontario, Canada. Two contrasting biomass sources were considered for continuous wood pellet production: harvest residue from current harvest operations (residue scenario) and fibre from expanded harvest of standing live trees (stemwood scenario). For the stemwood scenario, two metrics were used to assess the effects of displacing coal with forest biomass on GHG emissions: (i) time to carbon sequestration parity, defined as the time from the beginning of harvest to when the combined GHG benefit of displacing coal with biomass and the amount of carbon in regenerating forest equalled the amount of forest carbon without harvest for energy production; and (ii) time to carbon debt repayment, defined as the time from the beginning of harvest to when the combined GHG benefit of displacing coal with biomass and the amount of carbon in the regenerating forest equalled forest carbon at the time of harvest. Only time to carbon sequestration parity was used for the residue scenario. In the residue scenario, carbon sequestration parity was achieved within 1 year. In the stemwood scenario, times to carbon sequestration parity and carbon debt repayment were 91 and 112 years, respectively. Sensitivity analysis showed that estimates were robust when parameter values were varied. Modelling experiments showed that increasing growth rates for regenerating stands in the stemwood scenario could substantially reduce time to carbon sequestration parity. We discuss the use of the two metrics (time to carbon sequestration parity and time to carbon debt repayment) for assessing the effects of forest bioenergy projects on GHG emissions and make recommendations on terminology and methodologies for forest bioenergy studies.     

Edge influence on plant litter biomass in forest and savanna in the Brazilian cerrado

Edge influence, characterized by differences in ecosystem characteristics between the edge and the interior of remnants in fragmented landscapes, affects a variety of organisms and ecosystem processes. An important feature that may be affected by edges is the amount of plant litter, which provides important habitat for a large variety of organisms and influences ecological processes such as fire dynamics. We studied edge influence on plant litter and fine woody debris in the cerrado of São Paulo state, south‐eastern Brazil. We collected, sorted, dried and weighed plant litter along 180 m‐long transects perpendicular to three savanna and eleven forest edges adjacent to different anthropogenic land uses, with four to five transect per edge. There tended to be less biomass of the finer portions of fine woody debris at both savanna and forest edges. Graminoid litter at savanna edges was greater than in the corresponding interior areas, whereas other litter portions were either unaffected by edges or did not show consistent patterns in either savanna or forest. Edge influence was usually restricted to the first 20 m from the edge, was not influenced by edge characteristics and exhibited no clear differences between savanna and forest areas. Several mechanisms may have led to the variable patterns observed including variation in the plant community, plant architecture, and invasive species. The edge‐related variation in plant litter may putatively lead to, for example, increased fire frequency and intensity at the savanna edges and altered trophic dynamics at forest edges; the mechanisms and consequences of this edge influence should be addressed in future studies.     

Annual soil respiration in broadleaf forests of northern Wisconsin: influence of moisture and site biological,chemical, and physical characteristics

Soil temperature and moisture influence soil respiration at a range of temporal and spatial scales. Although soil temperature and moisture may be seasonally correlated, intra and inter-annual variations in soil moisture do occur. There are few direct observations of the influence of local variation in species composition or other stand/site characteristics on seasonal and annual variations in soil moisture, and on cumulative annual soil carbon release. Soil climate and soil respiration from twelve sites in five different forest types were monitored over a 2-year period (1998–1999). Also measured were stand age, species composition, basal area, litter inputs, total above-ground wood production, leaf area index, forest floor mass, coarse and fine root mass, forest floor carbon and nitrogen concentration, root carbon and nitrogen concentration, soil carbon and nitrogen concentration, coarse fraction mass and volume, and soil texture. General soil respiration models were developed using soil temperature, daily soil moisture, and various site/soil characteristics. Of the site/soil characteristics, above-ground production, soil texture, roots + forest floor mass, roots + forest floor carbon:nitrogen, and soil carbon:nitrogen were significant predictors of soil respiration when used alone in respiration models; all of these site variables were weakly to moderately correlated with mean site soil moisture. Daily soil climate data were used to estimate the annual release of carbon (C) from soil respiration for the period 1998–1999. Mean annual soil temperature did not differ between the 2 years but mean annual soil moisture was approximately 9% lower in 1998 due to a summer drought. Soil C respired during 1998 ranged from 8.57 to 11.43 Mg C ha⁻¹ yr⁻¹ while the same sites released 10.13 and 13.57 Mg C ha⁻¹ yr⁻¹ in 1999; inter-annual differences of 15.41 and 15.73%, respectively. Among the 12 sites studied, we calculated that the depression of soil respiration linked to the drought caused annual differences of soil respiration from 11.00 to 15.78%. Annual estimates of respired soil C decreased with increasing site mean soil moisture. Similarly, the difference of respired carbon between the drought and the non-drought years generally decreased with increasing site mean soil moisture.     

Rates of decay in wood measured by carbon dioxide production

The applicability of two methods of respirometry to measurement of the carbon dioxide output of naturally decaying branches and wood of standing trees was studied. The Warburg respirometer was judged unsuitable for general use on decaying wood. A conductivity respirometer was found satisfactory. Carbon dioxide production was essentially unaffected by fragmentation suggesting that the measurements obtained are likely to be a valuable indication of decay in the intact tree or branch. The carbon dioxide production of samples was fairly stable when conditions were kept constant but responded promptly to increased or decreased moisture. Wood from branches infested with Polyporus tulipiferae in which moisture was increased from approximately 20%–50% (fresh weight basis) increased its carbon dioxide output over a 4-day period by some seven times. Comparable wood in which the moisture content was reduced from 45 to 20 % showed an almost linear reduction in rate over a similar period to about one-sixth the original rate. Rate of decay in stained and unstained zones of living trees showed no consistent effect of the stain. However, rates of decay in heart-rot of poplar caused by Fomes igniarius were only one-third those reported by Verrall (1937) for decay in culture.     

The use of DNA barcodes to estimate phylogenetic diversity in forest communities of southern China

To elucidate potential ecological and evolutionary processes associated with the assembly of plant communities, there is now widespread use of estimates of phylogenetic diversity that are based on a variety of DNA barcode regions and phylogenetic construction methods. However, relatively few studies consider how estimates of phylogenetic diversity may be influenced by single DNA barcodes incorporated into a sequence matrix (conservative regions vs. hypervariable regions) and the use of a backbone family‐level phylogeny. Here, we use general linear mixed‐effects models to examine the influence of different combinations of core DNA barcodes (rbcL, matK, ITS, and ITS2) and phylogeny construction methods on a series of estimates of community phylogenetic diversity for two subtropical forest plots in Guangdong, southern China. We ask: (a) What are the relative influences of single DNA barcodes on estimates phylogenetic diversity metrics? and (b) What is the effect of using a backbone family‐level phylogeny to estimate topology‐based phylogenetic diversity metrics? The combination of more than one barcode (i.e., rbcL + matK + ITS) and the use of a backbone family‐level phylogeny provided the most parsimonious explanation of variation in estimates of phylogenetic diversity. The use of a backbone family‐level phylogeny showed a stronger effect on phylogenetic diversity metrics that are based on tree topology compared to those that are based on branch lengths. In addition, the variation in the estimates of phylogenetic diversity that was explained by the top‐rank models ranged from 0.1% to 31% and was dependent on the type of phylogenetic community structure metric. Our study underscores the importance of incorporating a multilocus DNA barcode and the use of a backbone family‐level phylogeny to infer phylogenetic diversity, where the type of DNA barcode employed and the phylogenetic construction method used can serve as a significant source of variation in estimates of phylogenetic community structure.     

The effects of urban or rural landscape context and distance from the edge on native woodland plant communities

The increasing rate of urban sprawl continues to fragment European landscapes threatening the persistence of native woodland plant communities. The dynamics of woodland edges depend on the characteristics of woodland patches and also on landscape context. Our aim was to assess the extent of edge influences on the understorey vegetation of small native woodlands in rural and urban landscapes. The study was carried out in two cities of north-western France. Ten comparable woodlands, each of about 1.5 ha, were surveyed; five were situated adjacent to crops and five adjacent to built-up land. Vascular plant species were recorded in 420 3 × 3 m plots placed at seven different distances from the edge (from 0 to about 45 m from the edge). Soil pH, light levels, level of disturbance and tree and shrub cover were also recorded. Plant species were first classified as non-indigenous or indigenous and then three groups of indigenous species were distinguished according to their affinity for forest habitat (forest specialists, forest generalists and non-forest species). We inferred certain ecological characteristics of understorey vegetation by using Ellenberg values. An inter-class correspondence analysis was carried out to detect patterns of variation in plant community composition. Linear mixed models were used to test the effects of adjacent land use, distance from the edge and their interactions on the species richness of the different groups and on the ecological characteristics of vegetation. Total species richness, richness of forest generalists and of non-forest species decreased from edge to interior in both urban and rural woodlands. The number of non-indigenous species depended mainly on urban–rural landscape context. Urban woodland edges were not as rich in forest specialists as rural edges. More surprisingly, the number of forest specialists was higher in rural edges than in rural interiors. Community composition was mainly affected by urban–rural context and to a lesser degree by the edge effect: the community composition of urban edges resembled that of urban interiors whereas in rural woodlands vegetation near edges (up to 10 m) strongly differed from interiors with a pool of species specific to edges. Urban woodland vegetation was more nitrophilous than rural vegetation in both edges and interiors. A major difference between urban and rural vegetation was the distribution of basiphilous species according to distance from the edge. Generally edge vegetation was more basiphilous than interior vegetation however the presence of basiphilous species fell off quickly with distance from the edge in rural woodlands (in the first 10–15 m) and more slowly (from 25 m onwards) in urban woodlands. This pattern was linked to variation in measured soil pH. As regards the conservation of flora in small native woodlands, it appeared that invasion of exotic and non-forest species was currently limited in both urban and rural landscape contexts but might pose problems in the future, especially in urban woodlands. Forest species were not negatively affected by the edge effect and indeed edges seemed to provide important habitats for this group. Hence conservationists should pay particular attention to the protection of edges in urban woodlands.     

Dead wood biomass and turnover time,measured by radiocarbon,along a subalpine elevation gradient

Dead wood biomass can be a substantial fraction of stored carbon in forest ecosystems, and coarse woody debris (CWD) decay rates may be sensitive to climate warming. We used an elevation gradient in Colorado Rocky Mountain subalpine forest to examine climate and species effects on dead wood biomass, and on CWD decay rate. Using a new radiocarbon approach, we determined that the turnover time of lodgepole pine CWD (340±130 years) was roughly half as long in a site with 2.5–3°C warmer air temperature, as that of pine (630±400 years) or Engelmann spruce CWD (800±960 and 650±410 years) in cooler sites. Across all sites and both species, CWD age ranged from 2 to 600 years, and turnover time was 580±180 years. Total standing and fallen dead wood biomass ranged from 4.7±0.2 to 54±1 Mg ha^–1, and from 2.8 to 60% of aboveground live tree biomass. Dead wood biomass increased 75 kg ha^–1 per meter gain in elevation and decreased 13 Mg ha^–1 for every degree C increase in mean air temperature. Differences in biomass and decay rates along the elevation gradient suggest that climate warming will lead to a loss of dead wood carbon from subalpine forest.Electronic Supplementary Material Supplementary material is available for this article at