Estimating the population size of an endangered shorebird, the Madagascar plover, using a habitat suitability model

The Madagascar plover Charadrius thoracicus is a shorebird endemic to western Madagascar, currently classified as globally vulnerable. It is restricted to specialized wetland habitats that are increasingly threatened by humans. To inform future conservation measures for this poorly known species, we develop a predictive habitat suitability map and use this map to estimate the size of the Madagascar plover population. We integrate spatially referenced presence-only observations of Madagascar plovers with Landsat data, elevation data and measures of distance to settlements and the coast to produce a habitat suitability model using ecological niche factor analysis. Validation of this model using a receiver operating characteristic plot suggests that it is at least 84% accurate in predicting suitable sites. We then use our estimate of total area of suitable habitat above a critical suitability threshold and data on Madagascar plover density in suitable sites to estimate the total population size to derive a total population estimate of 3100±396 standard error individuals. Finally, we explore the conservation applications of our model.     

Population Density and Home Range Size of <Emphasis Type="Italic">Indri indri</Emphasis> in a Protected Low Altitude Rain Forest

We report the results of a census of Indri indri conducted in Betampona Nature Reserve, a lowland rain forest in eastern Madagascar. In addition, we conducted a year-long study of the ranging behavior of 3 groups in the southwestern region of the reserve. We used 2 methods to calculate population density and home range size, and to provide minimum and maximum estimates. Population density of Indri indri ranged from 6.9–13.2 individuals/km² in Betampona. Mean home range size is 27 ha. The values for population density and home range size are intermediate between values for Indri indri in selectively logged and undisturbed montane rain forest. Our results suggest a relationship between habitat disturbance, population density and home range size for the species. Recent increases in habitat disturbance appear to cause an increase in population density and a decrease in home range size. The results are consistent with ones for other folivorous primate populations. Further research on habitat requirements of Indri and availability in Betampona is necessary to investigate the possibility of translocating Indri from nearby forest fragments into Betampona.     

Gray-brown Mouse Lemurs (<Emphasis Type="Italic">Microcebus griseorufus</Emphasis>) as an Example of Distributional Constraints through Increasing Desertification

Climate change will impose new constraints on the distribution of species through desertification. Small-scale endemists common in biodiversity hotspots such as Madagascar are especially threatened. Among them are the gray-brown mouse lemurs (Microcebus griseorufus), which occupy the driest habitats in Madagascar of all Microcebus spp. We studied impacts of aridity on this species to identify critical factors for distributional limits. Accordingly, we compared populations of 2 adjacent habitats that differ in their humidity levels. We found that the more humid habitat provided more high-quality food and maintained a higher population density of Microcebus griseorufus, with individuals in better condition compared to the drier habitat. At the end of the wet, but not in the dry season, Microcebus griseorufus adjusted its home range size to local food plant density, which indicates that individuals optimize food intake in the wet season to prepare for the dry season. We found a negative exponential relationship between food plant density and home range size, which suggests an upper limit for the size of home ranges. According to this relationship, individuals from the drier habitat could not compensate for reduced food availability by enlarging their home range beyond this threshold. Thus, in case of declining food availability during the wet season due to a generally drier climate, individuals will not be able to extend their home ranges to include more food resources, and hence to accumulate enough fat reserves for the dry season. In consequence, they will have to migrate toward more mesic refugia. Migration, however, requires habitat connectivity, which is scarce in Madagascar’s largely anthropogenic and heavily fragmented landscape. Our data suggest that upper limits in home range sizes can limit a species’ ability to adapt to increasing aridity.     

The effects of population density and lake characteristics on growth and size structure of brook trout Salvelinus fontinalis (Mitchill, 1815) in boreal forest lakes in Canada

This paper examines the effect of lake characteristics on population density and how this variation affects growth, mortality and population size structure of brook trout, Salvelinus fontinalis. The study was conducted on 17 recreationally fished, reproductively isolated boreal forest lakes in Newfoundland, Canada from 1993 to 2000. A standardized sampling program, the Fyke Littoral Index Netting program (FLIN) was used to collected data that describes brook trout population parameters and life history attributes. Regression analyses showed significant relationships between fish density and biomass and characteristics of the lakes. Variation in fish density and biomass was explained by lake surface area and littoral habitat area. Significant relationships were found when growth, mortality and size structure were regressed against density. The proportional stock distribution and theoretical maximum size of brook trout were negatively related to density, and natural mortality was positively related to density. The largest maximum length and highest proportional stock densities occurred at brook trout densities of less than 30 fish/ha. In general, the higher the proportion of littoral habitat area the higher the densities of brook trout, which correspondingly had important effects on growth, natural mortality and size structure of the brook trout populations. This information is critical to the development of management strategies aimed at altering size distribution to produce specific fisheries management outcomes.     

Estimating the population size of the Sanje mangabey (Cercocebus sanjei) using acoustic distance sampling

The Sanje mangabey (Cercocebus sanjei) is endemic to the Udzungwa Mountains, Tanzania, and is classified as Endangered due to its putatively declining population size, habitat degradation and fragmentation. Previous population size estimates have ranged from 1,350 to 3,500 individuals, with the last direct survey being conducted 15 years before the present study. Previous estimates are now thought to have underestimated the population due to a limited knowledge of group and habitat size, nonsystematic approaches and the use of visual methods that are not suitable for surveying the Sanje mangabey with its semi-terrestrial and elusive behaviors. We used an acoustic survey method with observers recording the distinctive “whoop-gobble” vocalization produced by mangabeys and point transect distance sampling to model a detection function and estimate abundance. Twenty-eight surveys were conducted throughout the two forests where Sanje mangabeys are found: Mwanihana forest in the Udzungwa Mountains National Park (n = 13), and the Uzungwa Scarp Nature Reserve (n = 15). Group density was found to be significantly lower in the relatively unprotected Uzungwa Scarp forest (0.15 groups/km²; 95% CI: 0.08–0.27) compared to the well-protected Mwanihana forest (0.29 groups/km²; 95% CI: 0.19–0.43; p = .03). We estimate that there are 1,712 (95% CI: 1,141–2,567) individuals in Mwanihana and 1,455 (95% CI: 783–2,702) in the Uzungwa Scarp, resulting in a total population size of 3,167 (95% CI: 2,181–4,596) individuals. The difference in group density between sites is likely a result of the differing protection status and levels of enforcement between the forests, suggesting that protection of the Uzungwa Scarp should be increased to encourage recovery of the population, and reduce the threat of degradation and hunting. Our results contribute to the reassessment of the species' IUCN Red List status and informing management and conservation action planning.     

How common is common? Rapidly assessing population size and structure of the frog Mantidactylus betsileanus at a site in east‐central Madagascar

Population‐level data are urgently needed for amphibians in light of the ongoing amphibian extinction crisis. Studies focused on population dynamics are not only important for rare species but also for common species which shape ecosystems to a greater degree than those that are rare. Some of the greatest global amphibian species diversity is found in Madagascar, yet there are few studies on the ecology of frog species on the island. We carried out a mark‐recapture study on the widespread frog Mantidactylus betsileanus (Mantellidae: Mantellinae: Mantidactylus) at two adjacent rainforest sites in east‐central Madagascar to assess its population size and structure. To do so, we validated and implemented an individual identification protocol using photographs of the ventral patterns of frogs and identified individuals with photographic‐matching software. Using this rapid, non‐invasive survey method, we were able to estimate a density of 26 and 28 frogs per 100 m² at each of the two sites sampled. Our results show the rainforests near the village of Andasibe, Madagascar support remarkably high amphibian abundance, helping illustrate the significant ecological role of frogs in this ecosystem. Further, individual frog markings allowed us to develop more precise estimates than traditional survey methods. This study provides a blueprint to augment existing population studies or develop new monitoring programs in Madagascar and beyond.     

Use of space and home range characteristics of Lepilemur mittermeieri,an endangered sportive lemur endemic to the Ampasindava peninsula,north‐west Madagascar

Lepilemur mittermeieri, a little‐studied sportive lemur of north‐west Madagascar, endemic to the Ampasindava Peninsula, faces habitat loss through forest degradation and rapid fragmentation. Understanding its habitat requirement is the first step toward preservation of this threatened forest‐dependent species. In this study, we gathered data on the use of space and home range characteristics of L. mittermeieri. We studied individuals from early March to the end of June 2015 and 2016, in three sites of the Ampasindava peninsula. We radio‐tracked 15 individuals to obtain detailed information on the size and location of home ranges (around 450 hr of tracking). Direct observation and morphometric measurements provided additional data sets. Both kernel density estimation (KDE) and minimum convex polygon (MCP) methods yielded similar home range sizes (an average of 2.01 ha with KDE method and 1.96 ha with MCP method). We did not find differences in home range size between males and females, with respect to forest type or proximity to the forest edge. Home ranges overlapped and individuals showed low levels of territoriality. We highlighted a sexually‐dimorphic trait: males have longer upper canine than females. Our results constitute the first set of ecological information on Lepilemur mittermeieri and could be the basis for a conservation strategy for this endangered species with a very small distribution area.     

Estimating breeding season abundance of golden-cheeked warblers in Texas,USA

Population abundance estimates using predictive models are important for describing habitat use and responses to population-level impacts, evaluating conservation status of a species, and for establishing monitoring programs. The golden-cheeked warbler (Setophaga chrysoparia) is a neotropical migratory bird that was listed as federally endangered in 1990 because of threats related to loss and fragmentation of its woodland habitat. Since listing, abundance estimates for the species have mainly relied on localized population studies on public lands and qualitative-based methods. Our goal was to estimate breeding population size of male warblers using a predictive model based on metrics for patches of woodland habitat throughout the species' breeding range. We first conducted occupancy surveys to determine range-wide distribution. We then conducted standard point-count surveys on a subset of the initial sampling locations to estimate density of males. Mean observed patch-specific density was 0.23 males/ha (95% CI = 0.197–0.252, n = 301). We modeled the relationship between patch-specific density of males and woodland patch characteristics (size and landscape composition) and predicted patch occupancy. The probability of patch occupancy, derived from a model that used patch size and landscape composition as predictor variables while addressing effects of spatial relatedness, best predicted patch-specific density. We predicted patch-specific densities as a function of occupancy probability and estimated abundance of male warblers across 63,616 woodland patches accounting for 1.678 million ha of potential warbler habitat. Using a Monte Carlo simulation, our approach yielded a range-wide male warbler population estimate of 263,339 (95% CI: 223,927–302,620). Our results provide the first abundance estimate using habitat and count data from a sampling design focused on range-wide inference. Managers can use the resulting model as a tool to support conservation planning and guide recovery efforts. © 2012 The Wildlife Society.     

广西恩城保护区黑叶猴种群数量和保护现状

黑叶猴是栖息于喀斯特石山地区的珍稀濒危灵长类动物,由于非法捕杀和栖息地丧失,种群数量急剧减少。2017年10-12月,我们采用样方法调查恩城国家级自然保护区及其周边地区黑叶猴的种群分布、数量及保护现状,分析其致危因素,为制定有效管理行动计划提供理论依据。本次调查共记录到黑叶猴夜宿地89处,其中有43处夜宿地下方有新鲜排泄物。结合本次调查和访问,确定黑叶猴的种群数量为18群100~105只,包括1只全白化黑叶猴成年雌性个体;其中11群分布在保护区内,7群分布在保护区外。猴群由3~12只个体组成。栖息地破碎化和退化是威胁恩城保护区黑叶猴种群生存的主要因素。     

Population status and habitat preference of Soemmerring’s gazelle in Alledeghi Wildlife Reserve,Eastern Ethiopia

This study was undertaken to determine the current population size, structure and habitat preference of Soemmerring's gazelle [Nanger soemmerringii (Cretzschmar 1828)] in the Alledeghi Wildlife Reserve, NE Ethiopia. Animals were counted, both during dry and wet seasons, along 12 line transects each in three habitat types (grassland, tree‐scattered grassland and bushland) in 2015/16. Habitat type had nonsignificant effect on mean population density of Soemmerring's gazelle, but wet season mean density was significantly higher than dry season mean density. Estimated weighted mean (±95% CI) population density of the species in the reserve was 1.90 (±0.17) and 5.99 (±0.370) individuals/km² during the dry and wet seasons, respectively. Total population size of the species in the Alledeghi Wildlife Reserve was estimated at 826 ± 77 and 2,562 ± 158 individuals during the dry and wet seasons, respectively. Over half of the total population of Soemmerring's gazelle was represented by adult females during both seasons. Seasonal habitat preference of Soemmerring's gazelle was statistically significant, with greater preference for grassland habitat during wet season and for bushland habitat during dry season. In conclusion, this study has provided valuable data that will be used as a baseline for future population monitoring.     

Habitat density, song structure and dialects in the Madagascar paradise flycatcher Terpsiphone mutata

Bird song is an important signal for long-distance intraspecific communication. Thus, song characteristics are expected to have undergone adaptive modification to maximise propagation through the environment. Acoustic properties of song should be correlated with the habitat in which they are broadcast, and neighbouring individuals should sing similar songs because they share the same local acoustic environment. We tested these predictions by investigating associations between habitat characteristics and song attributes in the Madagascar paradise flycatcher Terpsiphone mutata . We also examined whether song dialects were distributed non-randomly through the study site and which features of habitat density best explained these associations. We found that individuals on territories in denser habitat sang longer songs at lower frequencies. Features of song structure were related to both understorey and canopy cover density. The distribution of dialects within the study site was also strongly associated with variation in understorey cover. These findings suggest that habitat variation contributes to maintaining microgeographic variation in song structure in this species.     

Dispersal is linked to habitat use in 59 species of water beetles (Coleoptera: Adephaga) on Madagascar

Lentic habitats (standing water, such as ponds and lakes) differ from lotic habitats (running water; streams and rivers) in their spatiotemporal persistence, with lentic habitats being more ephemeral in evolutionary time. This habitat instability is thought to select for dispersal, and several phylogenetic and macroecological studies have suggested that high rates of dispersal are more characteristic of lentic than lotic species. We tested this hypothesis using a comparative population genetic and phylogeographic approach based on mitochondrial DNA for 59 aquatic beetle species, sampled across Madagascar. Species were classified as lotic (n = 25), lentic (n = 25), or lotolentic (associated with both running and standing water; n = 9). Hierarchical population genetic structure (AMOVA), nucleotide diversity (π), and geographic structure were compared among habitat types. Lotic species had significantly greater population structure (Ф_ST = 0.55, hierarchical AMOVA) than lentic (Ф_ST = 0.13) and lotolentic (Ф_ST = 0.19) species using phylogenetic generalized least squares (PGLS) to correct for phylogeny. Body size was independent of habitat preference, and did not explain any of the intraspecific variation. A greater proportion of lotic species were endemic to Madagascar and lotic species had more pronounced geographic structure in their haplotype networks. The results indicate that dispersal is consistently lower among lotic species, independent of phylogenetic relatedness. This has macroevolutionary and biogeographical consequences for the freshwater fauna of this tropical biodiversity hotspot where remaining natural habitats are becoming increasingly isolated from one another.     

Characterization of 20 microsatellite markers in the plowshare tortoise,Astrochelys yniphora

The plowshare tortoise, Astrochelys yniphora, or Angonoka is one of Madagascar’s land tortoises, living in the vicinity of Baly Bay bamboo scrub in northwest Madagascar. Primary threats to this endangered species are due to poaching for pet trade and the loss and fragmentation of its natural habitat. The number of wild Angonoka is estimated to be ~400. Twenty polymorphic nuclear microsatellite loci were isolated from a genomic DNA on individuals from Andrafiafaly in Baly Bay National Park, Madagascar. Results from this study will help for future studies of the social structure and population dynamics of this species as well as identification of confiscated individuals from the illegal pet trade.     

A biogeographical perspective on the variation in mouse lemur density throughout Madagascar

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Ecological evaluation of local extinction: the case of two genera of endemic Mexican fish, Zoogoneticus and Skiffia

The Goodeidae is a family of endemic fish from central Mexico. Populations of several species are declining in the wild and two have been reported extinct; Skiffia francesae and Zoogoneticus tequila. Both species were native to just one locality in the Ameca basin. It is difficult to infer the causes of extinction, since limnological data from Teuchitlán prior to the extinction events are not available, and there are no replicate populations. As an alternative approach, we explored the potential links between key environmental variables and events of local extinction of any species in the two genera (four Skiffia spp. and two Zoogoneticus spp.). In 14 localities known to harbour populations of fish of at least one of the six focal species, we conducted limnological surveys in the rainy and in the dry season, and quantified population densities of endemic and introduced fish. In addition, we quantified the concentration of agricultural pollutants in water and mud samples taken from every locality in the dry season. We found that all the focal species face some conservation threat, but we also discovered an extremely small population of the reputedly extinct Zoogoneticus tequila; in contrast, Skiffia francesae was not found. Eutrophication and habitat fragmentation appear to be the main threats to the focal species, with habitat fragmentation exponentially reducing population size and driving populations into refuges where they face stochastic extinction.     

Combining species distribution modeling and distance sampling to assess wildlife population size: A case study with the northern yellow-cheeked gibbon (Nomascus annamensis)

Population size and distribution data for wildlife species play an important role in conservation and management, especially for endangered species. However, scientists seriously lack data on the population status of many species. The northern yellow-cheeked gibbon (Nomascus annamensis) is found in southern Lao PDR, central Vietnam, and northeastern Cambodia. The population of the species has significantly declined due to hunting, habitat loss, and the wildlife trade. To examine the population size and distribution of N. annamensis, we conducted a field survey in Song Thanh Nature Reserve, Quang Nam Province, central Vietnam from February to April 2019 using the audio point count method. We combined Distance Sampling and Ecological Niche Modeling to estimate the population of the gibbons. Results showed that the total suitable area for the gibbons was about 302.32 km², with the two most important variables of the habitat model being the distance-to-villages and forest type. We detected 36 gibbon groups through field surveys and estimated 443 (95% CI, 278–707) gibbon groups in Song Thanh Nature Reserve. Our results indicate that the gibbon population in Song Thanh Nature Reserve is the largest known population of N. annamensis in Vietnam. In addition, our study was the first to combine species distribution modeling with distance sampling to estimate gibbon density and population size. This approach might be useful in surveying and monitoring gibbon populations because it takes imperfect detection probability into account in estimating gibbon population density while estimating the area of potential habitat using environmental variables.     

Wattled Curassows in Bolivia: abundance,habitat use,and conservation status

ABSTRACT The Wattled Curassow (Crax globulosa) is a globally threatened species restricted to humid várzea forest (seasonally flooded forest along white‐water rivers) in low‐lying regions of Amazonia. The Wattled Curassow were thought to have been extirpated from the Beni area of Bolivia, but were rediscovered near the Río Negro River in 2001. Our objectives were to determine the size of this population, examine habitat use, and based on our results, assess the conservation status of the Wattled Curassow. During July and August 2006, we used distance sampling to estimate the population density in our study area. We estimated the density of Wattled Curassows at 3.4 (95% CI: 1.4–8.1) individuals/km² and all were observed within 300 m of the river. Based on the availability of suitable habitat (18 km² of riparian várzea habitat within 300 m of the river), we estimated that the breeding population of Wattled Curassows in our study area consisted of 61 individuals. The specialized habitat requirements of the Wattled Curassow has important conservation implications because previous population estimates were based on the availability of várzea forest rather than the availability of water edge habitat within várzea forest. As a result, the current global population estimate (2500–9999) is higher than our estimate (500–2500) that takes the specialized habitat requirements of the Wattled Curassow into account. Given this low estimated population, along with the severely fragmented state of the few remaining populations and their dependence on a specialized and vulnerable habitat, we recommend that the status of the Wattled Curassow be upgraded from Vulnerable to Endangered.     

Colonization dynamics and life history traits of seven Daphnia pulex genotypes

Summary A series of experiments revealed significant differences in the potential ability of seven Daphnia pulex genotypes to colonize two lakes in which this species does not naturally reside. Life table experiments, in which individuals from each genotype were raised separately on water and natural phytoplankton from the two lakes, revealed several significant differences among genotypes in life history traits, including age and size at first reproduction, clutch size and offspring body size. Significant differences among genotypes were also found in mean genotype fitness and rate of population increase, although all genotypes were able to increase in absolute numbers. Significant genotypexlake interaction was found for several life history traits and mean fitness, indicating that the relative success of invading genotypes may depend on habitat characteristics. Enclosure experiments, in which all seven genotypes were introduced together into enclosures in both lakes, revealed that some genotypes increased greatly while others declined in relative abundance, and that the most successful genotypes differed between lakes. In addition, the most successful genotypes in the enclosures were not necessarily the genotypes that displayed the highest fitness in the life table experiments, possibly because individuals in the enclosures competed for food resources, leading to exclusion of certain genotypes.     

Food limitation of population density in the orb-wed spider,Nephila clavata

Field studies were conducted to clarify whether variation in food availability among habitats influences population density, and whether population density has a negative effect on foraging success in the orb-web spider, Nephila clavata. Lifetime food consumption per individual (i.e., foraging success) strongly correlated with mean body size of adult females and mean fecundity in populations. Also, there was a positive correlation between foraging success and population density. Since foraging success reflected potential prey availability in the habitat, food resource appeared to be a limiting factor for populations in this spider. Mean fecundity per individual correlated with population density of the following year, suggesting that decreased reproduction is a major component of food limitation on population density. Consistent defferences in mean body size between particular sites were observed over years, while such difference was less obvious in density. Thus, ranking of food abundance among habitats seems to be predictable between years. A field experiment revealed that an artificial increase in population density had no negative effect on the feeding rate of individuals, suggesting that intraspecific competition for food is not important in this species.     

Variability in habitat, diet, and social structure of Hapalemur griseus in Ranomafana National Park, Madagascar

This study investigated the effects of habitat on the diet, population density, and social structure of a small-bodied folivore, Hapalemur griseus. Three groups of H. griseus were followed at two study sites (Tala and Vato) within Ranomafana National Park in southeastern Madagascar. These two sites differed in degree of habitat disturbance, forest composition, and forest structure, as determined by botanical plots (50 x 10 m) which were monitored twice monthly in the home ranges of three study groups (group T, n = 4; group V1, n = 4; group V2, n = 2). Tala has experienced more habitat disturbance compared to Vato, and this appeared to influence population density and group size. The H. griseus that inhabit Tala occur at much higher densities and in larger social groups than the H. griseus at Vato. These results may be attributable to: 1) a greater number of potential food sources, 2) a more dense resource base, and/or 3) higher-quality resources at Tala for this folivore. In general, dietary diversity for all groups was low, and groups exploited similar plant species. However, within this small range of food sources, each study group specialized in food sources found in the highest abundance within their home range. This resulted in dietary differences between groups within sites, as well as differences between sites. Introduced tree species such as Chinese guava (Psidium cattleyanum) may have greatly impacted the diet and social structure of those groups at Tala, whose home ranges included this food source. In contrast, Vato group 1 ingested more new and mature leaves of Ficus spp., and Vato group 2 primarily ate spider bamboo (Nastus elongatus). In conclusion, it seems that microhabitat differences, which may be related to habitat disturbance and/or other factors such as topography, influenced the food species ingested by H. griseus. Overall habitat quality, which is likely also affected by habitat disturbance, influenced general diet, population density, and group size.