Anaerobic Biodegradation and Hydrogeochemical Controls on Natural Attenuation of Trichloroethene in an Inland Forested Wetland

A field and laboratory investigation of natural attenuation, focusing on anaerobic biodegradation, was conducted in a forested wetland where a plume of trichloroethene discharges from a sand aquifer through organic-rich wetland and stream-bottom sediments. The rapid response of the wetland hydrology to precipitation events altered groundwater flow and geochemistry during wet conditions in the spring compared to the drier conditions in the summer and fall. During dry conditions, partial reductive dechlorination of trichloroethene to cis-1,2-dichloroethene occurred in methanogenic wetland porewater. Influx of oxygenated recharge during wet conditions resulted in a change from methanogenic to iron-reducing conditions and a lack of 1,2-dichloroethene production in the wet spring conditions. During these wet conditions, dilution was the primary attenuation mechanism evident for trichloroethene in the wetland porewater. Trichloroethene degradation was insignificant in anaerobic microcosms constructed with the shallow wetland sediment, and microbiological analyses showed a low microbial biomass and absence of known dehalorespiring microorganisms. Despite the typically organic-rich characteristic of wetland sediments, natural attenuation by anaerobic degradation may not be an effective groundwater remediation for chlorinated solvents at all sites.     

Transformation Kinetics of Chlorinated Ethenes by Methylosinus trichosporium OB3b and Detection of Unstable Epoxides by On-Line Gas Chromatography

A rapid and accurate method for the determination of transformation kinetics of volatile organic substrates was developed. Concentrations were monitored by on-line gas chromatographic analysis of the headspace of well-mixed incubation mixtures. With this method, the kinetics of transformation of a number of C(inf1) and C(inf2) halogenated alkanes and alkenes by Methylosinus trichosporium OB3b expressing particulate methane monooxygenase or soluble methane monooxygenase (sMMO) were studied. Apparent specific first-order rate constants for cells expressing sMMO decreased in the order of dichloromethane, vinyl chloride, cis-1,2-dichloroethene, trans-1,2-dichloroethene, 1,1-dichloroethene, trichloroethene, chloroform, and 1,2-dichloroethane. During the degradation of trichloroethene, cis-1,2-dichloroethene, trans-1,2-dichloroethene, and vinyl chloride, the formation of the corresponding epoxides was observed. The epoxide of vinyl chloride and the epoxide of trichloroethene, which temporarily accumulated in the medium, were chemically degraded according to first-order kinetics, with half-lives of 78 and 21 s, respectively. Cells expressing sMMO actively degraded the epoxide of cis-1,2-dichloroethene but not the epoxide of trans-1,2-dichloroethene. Methane and acetylene inhibited degradation of the epoxide of cis-1,2-dichloroethene, indicating that sMMO was involved.     

Relationship between communities and processes; new insights from a field study of a contaminated ecosystem

We used a 93‐year‐old mine waste contamination gradient in alluvial soil to explore the relationship between ecosystem level functioning and community structure in a chronically stressed ecosystem. The sensitivity of broad functional parameters (in situ soil respiration, microbial biomass, above and below ground plant biomass) and microbial diversity [phospholipid fatty acid (PLFA) abundance and richness] were compared. Functional responses were linear with respect to contaminants while thresholds were detected in the community structural response to contamination along the gradient. For example, in situ soil respiration was negatively and linearly correlated to contamination concentration (R = ?0.783, P < 0.01), but changes in microbial community structure only became evident where contaminant concentrations were greater than 28 times above background levels. Our results suggest that functional redundancy does not prevent depression of ecosystem function in the long‐term.     

Importance of historical factors on species richness and composition of butterfly assemblages (Lepidoptera: Rhopalocera) in a northern Iberian mountain range

ABSTRACT. The butterfly assemblages of three vegetation types (pasture, heathland and rocky outcrop with Genista spp.) and two geographical orientations (a northern slope and a sheltered gorge) were studied along an altitudinal gradient in the Picos de Europa in northern Spain. In order to study the effects or historical climatic changes on current butterfly assemblages, it was examined if changes in richness and faunal composition of assemblages were joined with changes in their biogeographical composition. The three vegetation types showed characteristic butterfly assemblages, but no difference in species richness and biogeographical composition was found. Species richness in the sheltered gorge was higher than in the northern slope. Faunal composition also varied between orientations and there were more widespread and Mediterranean species in the sheltered gorge than in the northern slope. Species richness declined with increasing altitude, though a midaltitudinal peak was observed. There was a faunal segregation between high and low localities. Species richness of widespread and Mediterranean butterflies decreased as altitude increased, whereas the reverse was true for montane species. Moreover, biogeographical elements differed in their climatic tolerances measured as altitudinal ranges. Therefore, changes in richness and composition of butterfly assemblages between both slopes and along the altitudinal gradient were joined in part with variation in their biogeographical composition. These results suggest that current species richness and composition of butterfly assemblages in the Picos de Europa might be the consequence of differential colonization of refuges during the past climatic changes.     

A highly purified enrichment culture couples the reductive dechlorination of tetrachloroethene to growth.

A microscopically pure enrichment culture of a gram-negative anaerobic bacterium, in the present article referred to as PER-K23, was isolated from an anaerobic packed-bed column in which tetrachloroethene (PCE) was reductively transformed to ethane via trichloroethene (TCE), cis-1,2-dichloroethene (cis-1,2-DCE), chloroethene, and ethene. PER-K23 catalyzes the dechlorination of PCE via TCE to cis-1,2-DCE and couples this reductive dechlorination to growth. H2 and formate were the only electron donors that supported growth with PCE or TCE as an electron acceptor. The culture did not grow in the absence of PCE or TCE. Neither O2, NO3-, NO2-, SO4(2-), SO3(2-), S2O3(2-), S, nor CO2 could replace PCE or TCE as an electron acceptor with H2 as an electron donor. Also, organic electron acceptors such as acetoin, acetol, dimethyl sulfoxide, fumarate, and trimethylamine N-oxide and chlorinated ethanes, DCEs, and chloroethene were not utilized. PER-K23 was not able to grow fermentatively on any of the organic compounds tested. Transferring the culture to a rich medium revealed that a contaminant was still present. Dechlorination was optimal between pH 6.8 and 7.6 and a temperature of 25 to 35 degrees C. H2 consumption was paralleled by chloride production, PCE degradation, cis-1,2-DCE formation, and growth of PER-K23. Electron balances showed that all electrons derived from H2 or formate consumption were recovered in dechlorination products and biomass. Exponential growth could be achieved only in gently shaken cultures.(ABSTRACT TRUNCATED AT 250 WORDS)     

Stability of interstitial crustacean communities in an isolated alluvial aquifer

The temporal stability of interstitial crustacean communities was investigated in relation to environmental variability in a perched aquifer, characterized by limited connection with surface waters. The author hypothesized that strong physico-chemical stability would enhance persistence and affect dominance patterns for groundwater fauna. Fifteen wells were sampled four times over a two-year period in order to assess the global stability of ground waters and to evaluate temporal changes in species assemblages. For each station, environmental patterns displayed only minor changes, while between-site differences were much larger. At the scale of the aquifer, strong temporal stability was found for groundwater physical and chemical variables. Interstitial crustaceans displayed diverse assemblages dominated by cyclopoid taxa. High persistence characterized community composition and structure (species relative abundance patterns, species richness, Shannon's diversity index) over the study period. Most well faunas were dominated numerically by a single species, whether micro- or macrocrustacean assemblages were considered. Faunal persistence observed in the aquifer was greater than that reported in many surface waters and was probably related to the strong environmental stability.     

Groundwater Macrocrustaceans as Natural Indicators of the Ariège Alluvial Aquifer

The macrocrustacean fauna from an alluvial aquifer in the French Pyrénées was investigated using 15 wells scattered over the floodplain. Wells were sampled at three contrasting periods for faunal, phy‐sical and chemical variables to investigate relationships between amphipod, isopod distributions and environmental factors. The assemblages, dominated by stygobite amphipod species, showed an overall persistence between the sampling dates. Groundwater quality exhibited between‐site variations related to agriculturally‐induced pollution. Low correlations existed between water quality and fauna distribution patterns. At the scale of the aquifer, groundwater contamination did not influence the macrocrustacean distribution. The spatial distribution of amphipods and isopods was clearly related to hydrogeology and hydrodynamics: strong relationships were found between the assemblages composition and the hydrological context of the stations (wells from the alluvial plain and from the alluvial terrace). With respect to spatial and temporal scales and providing adequate sampling methods, macrocrustaceans then constitute natural indicators of groundwater hydrodynamics in the Ariège aquifer.     

Species richness and trait composition of butterfly assemblages change along an altitudinal gradient

Species richness patterns along altitudinal gradients are well-documented ecological phenomena, yet very little data are available on how environmental filtering processes influence the composition and traits of butterfly assemblages at high altitudes. We have studied the diversity patterns of butterfly species at 34 sites along an altitudinal gradient ranging from 600 to 2,000 m a.s.l. in the National Park Berchtesgaden (Germany) and analysed traits of butterfly assemblages associated with dispersal capacity, reproductive strategies and developmental time from lowlands to highlands, including phylogenetic analyses. We found a linear decline in butterfly species richness along the altitudinal gradient, but the phylogenetic relatedness of the butterfly assemblages did not increase with altitude. Compared to butterfly assemblages at lower altitudes, those at higher altitudes were composed of species with larger wings (on average 9 %) which laid an average of 68 % more eggs. In contrast, egg maturation time in butterfly assemblages decreased by about 22 % along the altitudinal gradient. Further, butterfly assemblages at higher altitudes were increasingly dominated by less widespread species. Based on our abundance data, but not on data in the literature, population density increased with altitude, suggesting a reversed density–distribution relationship, with higher population densities of habitat specialists in harsh environments. In conclusion, our data provide evidence for significant shifts in the composition of butterfly assemblages and for the dominance of different traits along the altitudinal gradient. In our study, these changes were mainly driven by environmental factors, whereas phylogenetic filtering played a minor role along the studied altitudinal range.     

Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate

A novel Dehalococcoides isolate capable of metabolic trichloroethene (TCE)-to-ethene reductive dechlorination was obtained from contaminated aquifer material. Growth studies and 16S rRNA gene-targeted analyses suggested culture purity; however, the careful quantitative analysis of Dehalococcoides 16S rRNA gene and chloroethene reductive dehalogenase gene (i.e., vcrA, tceA, and bvcA) copy numbers revealed that the culture consisted of multiple, distinct Dehalococcoides organisms. Subsequent transfers, along with quantitative PCR monitoring, yielded isolate GT, possessing only vcrA. These findings suggest that commonly used qualitative 16S rRNA gene-based procedures are insufficient to verify purity of Dehalococcoides cultures. Phylogenetic analysis revealed that strain GT is affiliated with the Pinellas group of the Dehalococcoides cluster and shares 100% 16S rRNA gene sequence identity with two other Dehalococcoides isolates, strain FL2 and strain CBDB1. The new isolate is distinct, as it respires the priority pollutants TCE, cis-1,2-dichloroethene (cis-DCE), 1,1-dichloroethene (1,1-DCE), and vinyl chloride (VC), thereby producing innocuous ethene and inorganic chloride. Strain GT dechlorinated TCE, cis-DCE, 1,1-DCE, and VC to ethene at rates up to 40, 41, 62, and 127 micromol liter-1 day-1, respectively, but failed to dechlorinate PCE. Hydrogen was the required electron donor, which was depleted to a consumption threshold concentration of 0.76+/-0.13 nM with VC as the electron acceptor. In contrast to the known TCE dechlorinating isolates, strain GT dechlorinated TCE to ethene with very little formation of chlorinated intermediates, suggesting that this type of organism avoids the commonly observed accumulation of cis-DCE and VC during TCE-to-ethene dechlorination.     

Forest complexity drives dung beetle assemblages along an edge-interior gradient in the southwest Amazon rainforest

1. The habitat heterogeneity hypothesis predicts that heterogeneous habitats may provide more niches and diverse ways of exploiting environmental resources, thereby allowing more species to coexist, persist and diversify. 2. We aimed to investigate how an edge-interior gradient related to forest complexity influences species composition, abundance and richness of dung beetles in the western Amazon rainforest. We expected dung beetle abundance and richness to increase along the forest edge-interior gradient, in accordance with the habitat heterogeneity hypothesis. We also expected strong changes in species composition driven by species turnover in the forest interior and nestedness along the forest edges. We sampled dung beetles using baited pitfall traps across an edge-interior gradient. We also assessed the variation in forest features along the edge-interior gradient to identify changes in forest complexity. 3. Both species richness and abundance of dung beetles increased along the forest edge-interior, following the gradient of forest complexity. The Sorensen dissimilarity of dung beetle assemblages was higher among sampling units placed near the forest edge, although neither turnover, nor nestedness was different between the extremes of the forest edge-interior gradient. There was a clear compositional change along the edge-interior gradient mostly driven by species turnover. Individual indicator value analysis revealed that species were strongly associated with the forest interior conditions. 4. The simplification of the Amazon rainforest near clearings causes compositional changes in dung beetle assemblages. These changes are characterised by species-poor and low-abundance assemblages and may impair dung beetle ecological functions and therefore forest recovery.     

Diversity and community composition of euglossine bee assemblages (Hymenoptera: Apidae) in western Amazonia

Tropical forests are known for their diverse insect fauna. We aimed to determine the effect and relative importance of latitude, elevation and climatic factors affecting species richness and turnover in euglossine bee assemblages along a gradient of 18° latitude from tropical rainforests to subtropical, deciduous dry forests in Peru and Bolivia. Sixteen forest sites were sampled during the dry season. Variance partitioning techniques were applied to assess the relative effects of the spatial and environmental variables on species richness and composition. Furthermore, we conducted a Species Indicator Analysis to find characteristic species for the biogeographic zones. There was a significant decrease in species richness towards the subtropical area. The best predictors of species richness were precipitation and its consequences on soil properties as well as temperature seasonality. The abundance of euglossines was most closely related to precipitation and soil-pH, but the causal links of abundance to these factors is unclear since soil-pH itself is correlated to a drastic turnover of vegetation structure. Based on the analysis of assemblage composition we propose three different assemblages with a transitional zone at the southern tropical area. The biogeographical distribution of euglossine bees along our study transect appears to be primarily related to climatic conditions and does not reflect the common subdividion of Amazonia into drainage systems.     

Spatial and seasonal changes in species diversity of epilithic fungi along environmental gradients of a river

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Scale-up issues for in situ anaerobic tetrachloroethene bioremediation

For the full scale implementation of in situ anaerobic bioremediation of tetrachloroethene (PCE) in groundwater, the following issues must be addressed: which organic substrates at which concentration would be most effective in promoting dechlorination and are economical; how far the substrate, electron acceptor, and nutrients can be transported in the aquifer; and the placement of delivery and recovery wells for distributing these amendments. In a microcosm study, almost all of the tested inexpensive substrates supported reductive dechlorination of PCE through vinyl chloride (VC) under methanogenic conditions. A minimum of about 60 mg L⁻¹ of organic carbon was needed to dechlorinate 23 μM PCE with a single feeding. In a second microcosm study dechlorination stopped at 1,2-dichloroethene (DCE) in microcosms fed higher concentrations of several substrates. At the highest concentrations the substrates inhibited DCE production. Three field tracer tests were conducted to evaluate methods to distribute the amendments across the aquifer. The natural groundwater gradient is not sufficient to distribute substrate evenly. Groundwater injection at 60 times the natural flux rate increased the distribution of substrate. A mixing strategy of cross-gradient injection further increased the distribution of the substrate. Ammonia-nitrogen, sulfate, and phosphate were retarded relative to the substrate and inorganic tracer. Received 30 October 1995/ Accepted in revised form 07 June 1996     

Bryophyte and vascular plant responses to base-richness and water level gradients in Western Carpathian<Emphasis Type="Italic">Sphagnum</Emphasis>-rich mires

We investigated the importance of water chemistry and water regime for vascular plant and bryophyte species distribution in Western Carpathian mires dominated bySphagnum. Seventy-seven small circle plots distributed across a wide geographical area, a wide range of mineral richness and all possible microtopographical features were sampled in terms of species composition, physical-chemical water properties and water regime during one growing season. Both water chemistry and water regime were found to be important factors for vegetation composition. Bryophytes reflected only one clear gradient, connected to base-richness (pH, conductivity) and maximal water-level, whereas three different environmental gradients determined the occurrence of vascular plants: water-level amplitude, base-richness and an indistinct gradient presumably connected to peat layer thickness. When the entire data set was subjected to DCA ordination, the first resulting axis was governed by the bryophyte subset, whereas the second one was governed by the vascular plant subset. The species density of vascular plants was positively correlated with pH and conductivity. On the contrary, bryophyte species density showed no relationship to environmental factors. We further compared the pH values measured in groundwater and in water squeezed from bryophytes from the same plot; these plots were distributed along the base-richness gradient. Only in the acidic mires did the use of squeezed-water chemistry in the analyses give results similar to the use of groundwater pH. Further, we found thatSphagnum species with a similar response to the base-richness gradient had differentiated niches with respect to the water level gradient and vice versa.Sphagnum contortum andS. warnstorfii exhibiting the same demands for groundwater pH were segregated along the gradient of maximum water level. An analogous pattern was detected for acidophilous speciesSphagnum magellanicum andS. papillosum.     

Changes in algal assemblages along observed and experimental phosphorus gradients in a subtropical wetland, U.S.A.

• 1 We wanted to determine if changes in algae in the Everglades were due to increased phosphorus (P) loading. Epiphytic algae, water chemistry, and surface sediment chemistry were characterized from 32 sloughs along a P gradient in the Everglades and changes in the algal assemblages along the P gradient were compared with those along an experimental P gradient of in situ mesocosms. The sloughs are the wettest open water habitats characterized by floating and submerged aquatic plants in the Everglades.
• 2 Algal species composition was much more sensitive to P concentration than algal biomass. The diatom species variance among sloughs, captured by 1st ordination axis, was more highly correlated with total P (TP) in surface sediments (r = ‐ 0.79), than soluble reactive P (SRP) (r = ‐ 0.08) and TP (r = ‐ 0.48) in the water column. Algal biomass (µg chl a cm^‐2) was not significantly correlated with P (SRP: r = 0.22, TP: r = 0.19, sediment TP: r = 0.07) along the P gradient in the Everglades. Cluster analysis classified diatom species assemblages in 32 sloughs into three groups (TWIN I, II, III), which corresponded to three zones along the P gradient. Dominant diatom species shifted from Mastogloia smithii (40.3%), Cymbella scotica (22.3%), and Fragilaria synegrotesca (21.8%) in TWIN I to Nitzschia amphibia (22.4%) and C. microcephala (12.4%) in TWIN III. TP in surface sediments and TP in epiphyton assemblages increased 4‐ and 5‐fold from TWIN I to TWIN III, respectively.
• 3 Patterns in epiphytic assemblages along the experimental P gradient in the mesocosms were very similar to those along the Everglades P gradient. Shannon diversity indices and species richness significantly increased along both P gradients. TN : TP ratio in epiphyton assemblages significantly decreased as sediment TP increased along both P gradient. Ordination analysis showed that diatom assemblages in the impacted zone (TWIN III) were ordinated closely to the assemblages from the highest P treatments in the mesocosms. The assemblages from the less impacted zone (TWIN I) were ordinated closely to the assemblages from controls in the mesocosms.
• 4 Concurrence between results of our survey and experiments suggest that changes in epiphytic assemblages along the P gradient in the Everglades are caused by increases in P concentrations.

     

Intrinsic bioremediation in a solvent-contaminated alluvial groundwater

An industrial site contaminated with a mixture of volatile organic compounds in its subsurface differed from previously reported locations in that the contamination consisted of a mixture of chlorinated, brominated, and non-halogenated aromatic and aliphatic solvents in an alluvial aquifer. The source area was adjacent to a river. Of the contaminants present in the aquifer, benzene, toluene, and chlorobenzene (BTC) were of primary concern. Studies of the physical, chemical, and microbiological characteristics of site groundwater were conducted. The studies concentrated on BTC, but also addressed the fate of the other aquifer VOCs. Gas chromatographic analyses performed on laboratory microcosms demonstrated that subsurface microorganisms were capable of BTC degradation. Mineralization of BTC was demonstrated by the release of ¹⁴CO₂ from radiolabelled BTC. In the field, distribution patterns of nutrients and electron acceptors were consistent with expression of in situ microbial metabolic activity: methane, conductivity, salinity and o-phosphate concentrations were all positively correlated with contaminant concentration; while oxidation-reduction potential, nitrate, dissolved oxygen and sulfate concentrations were negatively correlated. Total aerobes, aerotolerant anaerobes, BTC-specific degraders, and acridine orange direct microscopic microorganism counts were strongly and positively correlated with field contaminant concentrations. The relative concentrations of benzene and toluene were lower away from the core of the plume compared to the less readily metabolized compound, chlorobenzene. Hydrodynamic modeling of electron-acceptor depletion conservatively estimated that 450 kg of contaminant have been removed from the subsurface yearly. Models lacking a biodegradation term predicted that 360 kg of contaminant would reach the river annually, which would result in measurable contaminant concentrations. River surveillance, however, has only rarely detected these compounds in the sediment and then only at trace concentrations. Thus, the combination of field modeling, laboratory studies, and site surveillance data confirm that significant in situ biodegradation of the contaminants has occurred. These studies establish the presence of intrinsic bioremediation of groundwater contaminants in this unusual industrial site subsurface habitat. Received 01 December 1995/ Accepted in revised form 27 July 1996     

A Shallow BTEX and MTBE Contaminated Aquifer Supports a Diverse Microbial Community

Microbial communities in subsurface environments are poorly characterized and the impacts of anthropogenic contamination on their structure and function have not been adequately addressed. The release of contaminant(s) to a previously unexposed environment is often hypothesized to decrease the diversity of the affected community. We characterized the structure of microbial communities along a gradient of benzene, toluene, ethylbenzene, and xylene (BTEX) and methyl-tert-butyl-ether (MTBE) contamination, resulting from a petroleum spill, within a shallow sandy aquifer at Vandenberg Air Force Base (VAFB) in Lompoc, CA. Differences in microbial community composition along the contaminant plume were assessed via a combinatorial approach utilizing denaturing gradient gel electrophoresis (DGGE), cloning and sequencing, intergenic transcribed spacer analysis (ITS), and comparative phylogenetic analysis of partial 16S rDNA sequences. Substantial bacterial sequence diversity, similar levels of species richness, and similar phylo-groups (including the Cytophaga–Flavobacterium–Bacteroidetes group and numerous members of the -, -, -, -, and -groups of the proteobacteria) were observed in both uncontaminated and contaminated regions of the aquifer. High-resolution measures (ITS fingerprinting and phylogenetic inference) readily separated communities impacted by the original petroleum spill (in source zone) from those in other parts of the aquifer and indicated that communities exposed to MTBE only were similar to communities in uncontaminated regions. Collectively, these data suggest that petroleum contamination alters microbial community structure at the species and subspecies level. Further study is required to determine whether these changes have an impact on the functioning of this subsurface ecosystem.     

Responses of foliage‐living spider assemblage composition and traits to a climatic gradient in Themeda grasslands

For speciose, but poorly known groups, such as terrestrial arthropods, functional traits present a potential avenue to assist in predicting responses to environmental change. Species turnover is common along environmental gradients, but it is unclear how this is reflected in species traits. Community‐level change in arthropod traits, other than body size, has rarely been explored across spatial scales comparable to those examined here. We hypothesized that the composition and morphological traits of spider assemblages would differ across a gradient of climate and habitat structure. We examined foliage‐living spider assemblages associated with Themeda triandra grasslands along a 900 km climatic gradient in south‐eastern Australia. We used sweep‐netting to collect T. triandra‐associated spiders and counted juveniles and identified adults. We also measured morphological traits of adult spiders and noted their hunting mode. Associations with measures of habitat structure were less consistent than relationships with climate. Both juvenile and adult spiders were more abundant in warmer sites, although species richness was not affected by temperature. We found distinct turnover in species composition along the climatic gradient, with hunting spiders, particularly crab spiders (Thomisidae), making up a greater proportion of assemblages in warmer climates. A range of traits of spiders correlated with the climatic gradient. For example, larger spider species and species that were active hunters were more common in warmer climates. Changes in morphological traits across species, rather than within species drove the morphology‐climate relationship. Strong climate‐trait correlations suggest that it may be possible to predict changes in functional traits of assemblages in response to anthropogenic disturbances such as climate change.