The Influence of Soil Type on Rain Forest Insect Herbivore Communities

Insect herbivores were collected from five species of dipterocarp tree seedling within a large‐scale reciprocal transplant experiment in Sabah, Malaysia, on alluvial and sandstone soils in both gap and understory plots. The aim was to determine whether the location and ecological specialization of seedlings influenced the herbivore communities found on and around them. Three major groups of folivores were collected: Coleoptera, Orthoptera, and larval Lepidoptera. Herbivory of all species was confirmed through laboratory trials. Herbivore abundance in the understory plots was extremely low relative to the gaps. Rank‐abundance curves were similar on both soil types, differing only within the Lepidoptera. Coleoptera and Orthoptera communities were numerically dominated by a small suite of species capable of feeding on all dipterocarp species tested, whereas lepidopteran communities had both greater species richness and diversity. When corrected for leaf area surveyed, the abundance of Coleoptera was similar on both soil types, while larval Lepidoptera were more abundant in sandstone plots and Orthoptera were more abundant in alluvial plots. Estimated species richness of all three taxa was greater in alluvial forest, but there were contrasting patterns in Simpson diversity and evenness between groups. Species richness of Lepidoptera was greatest on seedlings when grown in their native soil type, providing partial evidence for possible escape effects, although this was not matched by differences in folivore abundance. The link between herbivore communities and herbivory rates on rain forest tree seedlings is complex and is unlikely to be detected through simplistic measures of abundance, species richness, or diversity.     

粤北小皮伞属的种类记述

本文报道了作者1984—1985年自广东北部山区所采集有关小皮伞属16个种,其中1个新种:Marasmius australis Bi et Li,sp.nov,以及11个国内新纪录。并附分种检索表。     

Species-diversity patterns in some middle ordovician communities from California - Nevada

Certain fossil communities may be recognized in collections from Early—mid-Middle Ordovician age rock units in the Inyo Mountains, California, and the Bare and Ranger Mountains in adjacent Nevada. These dominantly brachiopod—tribolite communities lived in several different, shallow shelf-sea environments. The communities appear to have maintained their diversity and evenness within relatively narrow limits for as long as the major aspects of the environments in which they lived, remained little changed (periods of about 1–2 m.y.). Some taxa occur in several communities (and are called wide-niched), and some occur in only a single community (and are called narrow-niched). Certain taxa that occur in large numbers in a single community appear to have been far more tolerant of particular environmental conditions than were associated taxa in the same community that are represented by few individuals. Counts of such abundant taxa that are restricted to a single community (and are thus considered narrow-niched) compared with counts of the individuals of those taxa found in several communities (and thus are considered wide-niched) indicate that the taxa highly tolerant of particular environmental conditions may be represented by more individuals than are the wide-niched taxa.     

Effects of mat morphology on large Sargassum-associated fishes: observations from a remotely operated vehicle (ROV) and free-floating video camcorders

Vagile large juvenile and adult fishes are often under-represented in traditional sampling of Sargassum–associated fishes in the open ocean. We used underwater video recordings from free-floating camcorders and a remotely operated vehicle (ROV) to assess the relative abundance of large mobile fishes under large Sargassum mats (> 10 m diameter), under dispersed clumps of Sargassum (< 1 m diameter), and in open water without Sargassum as a reference. In addition, we conducted dipnet sampling in each Sargassum treatment for a comparison to traditional methods. All samples were obtained in September 1992 along the western wall of the Gulf Stream off Cape Hatteras, North Carolina. A total of 31 fish taxa were identified from both video and dipnet collections. Only 8 taxa were identified in both video and dipnet collections, while 11 taxa were seen only in video and 10 were only found in dipnet collections. Dipnet collections were dominated by juvenile balistids and other small, cryptic fishes, while the video observations were mainly of larger, rapidly-moving carangids. Fish diversity increased with the amount of continuous Sargassum habitat: four taxa were observed when no Sargassum was present, 12 under clumps, and 19 under mats. Our results indicated that mat morphology significantly affects the Sargassum–associated fishes, and that both video and traditional capture methods are complementary and should be used together to accurately census this community.     

The ecology and distribution of lichens in tropical deciduous and evergreen forests of northern Thailand

During three years of research on epiphytic lichen communities as indicators of environmental change in northern Thailand plots were set up in a range of forest types between 400 and 1600 m in 1991/2 and revisited in 1993. Other areas were visited in 1993 and collections made in a wider range of geographical, altitudinal and vegetation conditions in Thailand. From this data factors influencing the distribution of lichens in a monsoon climate are outlined and characteristic components of the lichen flora given at family, generic and where possible specific level. Dominant taxa of the montane forests include hygrophilous macrolichens of the 'Lobarion' that are also a characteristic component of old growth fagaceous forests in Europe, whereas the evergreen forests are dominated by moisture-dependent crustose taxa with a trentepohlioid photobiont, and the deciduous dipterocarp forests by often brightly coloured xerophytic lichens with a trebouxioid photobiont. Taxa are proposed as indicators of forest type including those that are indicators of old-growth forests and of disturbance. Quantitative recording of selected taxa at genus and species level is suggested to estimate rates of change in monsoon forests in southeast Asia.     

11. The Indo-Malaysian North-Australian phycogeographical region revised

The present knowledge of the freshwater algal flora in the Indo-Malaysian North Australian region is reviewed. More than 4700 taxa have been recorded from this region. Desmids, diatoms and cyanobacteria are among the better studied groups of organisms, while phytoflagellates have received very little attention. Phytoplankton communities in tropical lakes are generally similar to summer communities of temperate lakes. In addition, there is a large number of typical tropical taxa, including pantropical and regional endemic elements. Local endemism occurs in the old Tertiary lakes of the region. The composition of algal communities changes markedly along an altitudinal gradient, and tropical taxa are gradually replaced by taxa characteristic for cool climatic conditions. Biogeographical distribution patterns are exemplified for the desmids and diatoms. Among the more than 2680 desmids recorded from the Indo-Malaysian North Australian region, about 800 have never been found elsewhere. Dispersal by migratory birds and past climatic changes might explain distribution patterns. Because of incomplete taxonomy and a general lack of understanding of the autoecology, distribution and speciation of freshwater algae, however, there remain serious obstacles for detailed biogeographical analyses.     

中国鹅膏菌属(担子菌)的物种多样性

鹅膏菌属（Ａｍａｎｉｔａ）是一个近世界性广布的大属,全球已被描述而又被承认的有近５００种。在文献中,我国此属已记载约２００种。然而,许多种都是原初描述于欧洲或北美的种类。近来的研究表明,东亚的鹅膏菌独特且有其自身的分布范围。东亚的有些种虽与产于欧洲或北美的某些种相似,但仔细的野外观察,详尽的形态解剖学和分子进化生物学研究结果表明,东亚的鹅膏菌是独立的分类群。在欧洲,人们有采集著名食菌恺撒鹅膏菌的习     

Contrasting Diversity and Host Association of Ectomycorrhizal Basidiomycetes versus Root-Associated Ascomycetes in a Dipterocarp Rainforest

Root-associated fungi, including ectomycorrhizal and root-endophytic fungi, are among the most diverse and important belowground plant symbionts in dipterocarp rainforests. Our study aimed to reveal the biodiversity, host association, and community structure of ectomycorrhizal Basidiomycota and root-associated Ascomycota (including root-endophytic Ascomycota) in a lowland dipterocarp rainforest in Southeast Asia. The host plant chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) region and fungal internal transcribed spacer 2 (ITS2) region were sequenced using tag-encoded, massively parallel 454 pyrosequencing to identify host plant and root-associated fungal taxa in root samples. In total, 1245 ascomycetous and 127 putative ectomycorrhizal basidiomycetous taxa were detected from 442 root samples. The putative ectomycorrhizal Basidiomycota were likely to be associated with closely related dipterocarp taxa to greater or lesser extents, whereas host association patterns of the root-associated Ascomycota were much less distinct. The community structure of the putative ectomycorrhizal Basidiomycota was possibly more influenced by host genetic distances than was that of the root-associated Ascomycota. This study also indicated that in dipterocarp rainforests, root-associated Ascomycota were characterized by high biodiversity and indistinct host association patterns, whereas ectomycorrhizal Basidiomycota showed less biodiversity and a strong host phylogenetic preference for dipterocarp trees. Our findings lead to the working hypothesis that root-associated Ascomycota, which might be mainly represented by root-endophytic fungi, have biodiversity hotspots in the tropics, whereas biodiversity of ectomycorrhizal Basidiomycota increases with host genetic diversity.     

Assessing five decades of change in a high Arctic parasitoid community

Arctic ecosystems are fragile, and are particularly sensitive to the pressures of climate change. Both average temperature and precipitation have increased over the past five decades on Ellesmere Island, Nunavut, Canada in the high Arctic. Altered growth forms and increased biomass in dominant plant species on Ellesmere Island have been observed concurrent with the changing climate, but shifts in the diversity or rank abundance of plant and bird species have not been detected. Changes in diversity may take longer to appear, or may be assessed better using organisms with shorter generation times such as insects. We explored the ecological impacts of climate change on Ellesmere Island using historical and contemporary communities of ichneumonid wasps. We compared community diversity, functional composition, and body size of two common species using ichneumonid specimens collected in 1961–1965, 1980–1982, 1989–1992, and 2010. We found high compositional similarity between collections, overlapping estimates of species richness, no change in the proportion of idiobiont genera in the community, and no clear pattern in body size over time. The greatest amount of variation over time was detected in parasitoids of herbivores; proportionally fewer herbivore‐parasitizing genera were found in 2010 than in historical collections, and the two genera that were only found in one of the four collections were both parasitoids of herbivores. Our results point to the need to assess climate change effects in Arctic systems using a range of taxa, and responses to large‐scale environmental disturbances may be idiosyncratic and difficult to predict.     

The Biogeography of Ammonia-Oxidizing Bacterial Communities in Soil

Although ammonia-oxidizing bacteria (AOB) are likely to play a key role in the soil nitrogen cycle, we have only a limited understanding of how the diversity and composition of soil AOB communities change across ecosystem types. We examined 23 soils collected from across North America and used sequence-based analyses to compare the AOB communities in each of the distinct soils. Using 97% 16S rRNA sequence similarity groups, we identified only 24 unique AOB phylotypes across all of the soils sampled. The majority of the sequences collected were in the Nitrosospira lineages (representing 80% of all the sequences collected), and AOB belonging to Nitrosospira cluster 3 were particularly common in our clone libraries and ubiquitous across the soil types. Community composition was highly variable across the collected soils, and similar ecosystem types did not always harbor similar AOB communities. We did not find any significant correlations between AOB community composition and measures of N availability. From the suite of environmental variables measured, we found the strongest correlation between temperature and AOB community composition; soils exposed to similar mean annual temperatures tended to have similar AOB communities. This finding is consistent with previous studies and suggests that temperature selects for specific AOB lineages. Given that distinct AOB taxa are likely to have unique functional attributes, the biogeographical patterns exhibited by soil AOB may be directly relevant to understanding soil nitrogen dynamics under changing environmental conditions.     

Paleobiogeographic relationships of angiosperms from the Cretaceous and early Tertiary of the North American area

The biogeographic affinities of the Cretaceous and early Tertiary angiosperm floras of the North American area (which includes Meso-America, and the Greater Antilles) have been the subject of considerable interest. Although recent treatments of isolated taxa have shown affinities between North American, European, east Asian and Neotropic floras, the relationships have not been quantified. This study compiles the records of fossils whose familial relationships seem secure. This provides a carefully culled, and uniformly presented review of the Cretaceous and Paleogene record from 1950 to 1989 and supplements LaMotte (1950). A subset of these records, which showed compelling evidence of subfamilial relationships, was analyzed to quantify the relationships of the Cretaceous, Paleocene, Eocene and Oligocene floras to other regions. The analysis suggests that for the entire period 24% of the fossil species had affinities with extant taxa from the Northern Hemisphere; 10% with taxa from the Northern Hemisphere that have a few species in South America; 17% with taxa from Eurasia; 3% with taxa with a disjunct Eurasian-South American pattern; 19% with taxa from South America and/or Africa; 8% with taxa from South America and/or Africa that have an important sister group in southeast Asia; 5% with taxa from the Old World; and 13% with taxa having other distribution patterns. Those fossils with affinities to Laurasian taxa are mostly found in the northern and western portions of the North American area. The fossils with affinities to South American and/or African taxa are found in the southern portions of North America, Meso-America, and the Greater Antilles. The taxa with disjunct distributions show both patterns. These patterns suggest that during this time there were wide-spread temperate elements, found throughout Laurasia; Boreotropical flora elements, distributed in North America, Europe and along the Tethys seaway to southeast Asia; and West Gondwana elements which show dispersion from South America across the proto-Caribbean. The paleobotanical data are compatible with current geological, paleontological and biogeographical studies.     

Identifying the microbial taxa that consistently respond to soil warming across time and space

Soil microbial communities are the key drivers of many terrestrial biogeochemical processes. However, we currently lack a generalizable understanding of how these soil communities will change in response to predicted increases in global temperatures and which microbial lineages will be most impacted. Here, using high‐throughput marker gene sequencing of soils collected from 18 sites throughout North America included in a 100‐day laboratory incubation experiment, we identified a core group of abundant and nearly ubiquitous soil microbes that shift in relative abundance with elevated soil temperatures. We then validated and narrowed our list of temperature‐sensitive microbes by comparing the results from this laboratory experiment with data compiled from 210 soils representing multiple, independent global field studies sampled across spatial gradients with a wide range in mean annual temperatures. Our results reveal predictable and consistent responses to temperature for a core group of 189 ubiquitous soil bacterial and archaeal taxa, with these taxa exhibiting similar temperature responses across a broad range of soil types. These microbial ‘bioindicators’ are useful for understanding how soil microbial communities respond to warming and to discriminate between the direct and indirect effects of soil warming on microbial communities. Those taxa that were found to be sensitive to temperature represented a wide range of lineages and the direction of the temperature responses were not predictable from phylogeny alone, indicating that temperature responses are difficult to predict from simply describing soil microbial communities at broad taxonomic or phylogenetic levels of resolution. Together, these results lay the foundation for a more predictive understanding of how soil microbial communities respond to soil warming and how warming may ultimately lead to changes in soil biogeochemical processes.     

Protozoan communities of the Flint River-Lake Blackshear ecosystem (Georgia,USA)

Freshwater protozoa are poorly characterized in river ecosystems. We report here the richness of the protozoan biotas in relation to environmental gradients from an ecosystematic survey of a large, coastal plain river. Communities were collected from natural and artificial substrates concurrent with water chemistry analysis at 11 sites along the Flint River and Lake Blackshear impoundment. Community similarity, the distribution of collected taxa in functional feeding groups, and the relation of communities to environmental gradients were evaluated. Two principal compenents determined from water chemistry data showed important downstream gradients of decreasing water hardness and increasing nutrient levels. Taxonomic richness was high; 200 to 450 taxa were collected depending on season and collecting technique. Artificial substrates provided the richest collections. Bactivorous species were the vast majority of all taxa collected. Community composition showed an orderly transition from upstream to downstream, and photosynthetic forms were enhanced at nutrient enriched sites. Communities were strongly influenced by increasing nutrient levels. Protozoan community analysis showed that microbial community composition reflects human influences on river ecosystems. Since microbial species exploit detrital resources and respond sensitively to human influences, they can provide important information regarding ecosystem conditions.     

Competition matters: Determining the drivers of land snail community assembly among limestone karst areas in northern Vietnam

The insular limestone karsts of northern Vietnam harbor a very rich biodiversity. Many taxa are strongly associated with these environments, and individual species communities can differ considerably among karst areas. The exact processes that have shaped the biotic composition of these habitats, however, remain largely unknown. In this study, the role of two major processes for the assembly of snail communities on limestone karsts was investigated, interspecific competition and filtering of taxa due to geographical factors. Communities of operculate land snails of the genus Cyclophorus were studied using the dry and fluid‐preserved specimen collections of the Natural History Museum, London. Phylogenetic distances (based on a Bayesian analysis using DNA sequence data) and shell characters (based on 200 semilandmarks) were used as proxies for ecological similarity and were analyzed to reveal patterns of overdispersion (indicating competition) or clustering (indicating filtering) in observed communities compared to random communities. Among the seven studied karst areas, a total of 15 Cyclophorus lineages were found. Unique communities were present in each area. The analyses revealed phylogenetic overdispersion in six and morphological overdispersion in four of seven karst areas. The pattern of frequent phylogenetic overdispersion indicated that competition among lineages is the major process shaping the Cyclophorus communities studied. The Coastal Area, which was phylogenetically overdispersed, showed a clear morphological clustering, which could have been caused by similar ecological adaptations among taxa in this environment. Only the community in the Cuc Phuong Area showed a pattern of phylogenetic clustering, which was partly caused by an absence of a certain, phylogenetically very distinct group in this region. Filtering due to geographical factors could have been involved here. This study shows how museum collections can be used to examine community assembly and contributes to the understanding of the processes that have shaped karst communities in Vietnam.     

Invaders are not a random selection of species

We assembled information on 119 species of freshwater macroinvertebrate invaders in North America and Europe, and compared them to all native freshwater species in North America and Europe. We tested whether the invaders were a random or selected group among taxa (phylum or class), water quality requirements, and feeding habit. We found that freshwater macroinvertebrate invaders are not a random selection of species, and are over-represented by molluscs and crustaceans, while taxa richness of native communities are dominated by insects. Over 35% of native species of aquatic invertebrates in North America are only able to live in areas with excellent or very good water quality, and are intolerant of organic pollution. In contrast, all invaders are tolerant of at least moderate amounts of organic pollution. There was a significant difference in the distribution of feeding habits between native species and invaders: collector-filterers (including suspension feeders) were 2.5–3 times more abundant, and predators were 3–4 times less abundant among invaders than among native invertebrates. The ongoing spread of exotic species affects the biodiversity of selected taxa, shifts communities toward greater tolerance of organic pollution and increases the numbers of suspension feeders, thereby enhancing benthic pelagic coupling in waterbodies with high densities of invaders. Because these processes are very similar in Europe and North America, we suggest that the observed patterns may have a common global effect.     

Linnaean fish specimens in the Swedish Museum of Natural History, Stockholm

Specimens of fish in the Naturhistoriska riksmuseet, Stockholm, which are type specimens of species described by Linnaeus are listed. A total of 94 taxa is represented in the collection. The sources for the typification of each taxon are given and the existence of type material in other collections is noted. A short history of this collection of fishes is given as it relates to confirmation of the original nature of the specimens.
Most of the taxa represented came from the collection of King Adolf Fredrik (1710–1771) and were described by Linnaeus in the Museum Adolphi Friderici Volumes 1 and 2 (1754a, 1764) or from Fredrick Hasselqvist's (1722–1752) collections in North Africa and the Mediterranean borderlands.     

Surface-associated diatoms from marine habitats at Cape Evans,Antarctica, including the first record of living <Emphasis Type="Italic">Eunotogramma marginopunctatum</Emphasis>

The diversity of diatom communities found epiphytically on red macroalgae collected under the sea ice at Cape Evans, Antarctica, was studied microscopically. Comparison of communities along a depth profile showed that species diversity decreased as depth below sea ice increased. Dominant taxa also changed with depth, with Cocconeis fasciolata dominant at 10 and 15 m, Porosira glacialis at 20 m and Eunotogramma marginopunctatum at 25 m. Epiphytic communities were also compared to sympagic and sediment-associated communities collected from a single depth. Species richness was greatest for communities associated with surface sediments while the poorest was found in sympagic, or sea-ice, communities. E. marginopunctatum, previously only described from fossil material, was found associated epiphytically on macroalgae from 20 to 25 m below sea ice.     

Genetic and morphological evidence for substantial hidden biodiversity in a freshwater crayfish species complex

North America is a center of biodiversity for freshwater crayfish, with >300 described species, mostly in the family Cambaridae. However, the phylogenetic and phylogeographic relationships among these taxa are poorly understood, despite their ubiquitous occurrence in North American freshwater habitats. Here, we target the geographically widespread Orconectesvirilis and its sister taxa for genetic and morphological investigation. We used sequence data from two mitochondrial genes (16S rRNA and cytochrome oxidase I) and from one nuclear gene (glyceraldehyde-3-phosphate dehydrogenase), as well as morphological data from the male gonopod, to gain insights into phylogenetic relationships among individuals collected in the northeastern United States, where this taxon is considered to be invasive, and from Kansas. Our data reveal evidence for three cryptic species in our collections, in addition to O.virilis sensu stricto; all four clades are separated by both mitochondrial and nuclear sequence data. In addition, two of the newly discovered species, O.sp. nov. A and O.sp. nov. B, are distinguishable from O.virilis by significant differences in gonopod morphology (no data on gonopod morphology were available for O.sp. nov. C). O.sp. nov. A was collected at numerous sites in Massachusetts; additional sampling is required to determine if this species is native to New England. Two other taxa, O.sp. nov. B and O.sp. nov. C, were both collected from sites in eastern Kansas, and historically have probably been considered to be O.nais. In summary, this investigation indicates that this species complex may harbor a great deal of unknown biodiversity over the rest of its described range, and suggests that further attention to the phylogenetics and phylogeography of North American crayfishes may yield interesting insights into the evolution of biodiversity.     

Ectomycorrhizal iconoclasts: the ITS rDNA diversity and nitrophilic tendencies of fetid Russula

Fetid Russula are frequently dominant ectomycorrhizal fungi, and some appear to be especially nitrophilic. However, little is known about their phylogenetic relationships or how common nitrophilic traits are in this group. This study addresses this gap and presents a phylogenetic analysis of ITS rDNA sequences and a meta-analysis of studies that examine ectomycorrhizal fungi response to nitrogen increase. The phylogenetic analysis indicates that (i) this lineage contains numerous unidentified taxa; (ii) the taxa have distinct geographic distributions; and (iii) the misuse of names such as R amoenolens, R. foetens or R. pectinatoides is common. Twenty-three well supported phylotypes were identified and include clades specific to western North America, eastern North America, Europe and Asia, while morphologically similar collections from tropical-equatorial regions are distinct. The metaanalysis shows that nitrophilic tendencies appear throughout fetid Russulas suggesting that this character is not an isolated trait within this subgenus but instead is a more general feature of the group overall. Mapping these tendencies across a broader portion of the Russulaceae shows that this trait is more regularly found in the basal Russula lineages and Lactarius spp., suggesting that this ability evolved early in these fungi.     

Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil

Recent studies have highlighted the surprising richness of soil bacterial communities; however, bacteria are not the only microorganisms found in soil. To our knowledge, no study has compared the diversities of the four major microbial taxa, i.e., bacteria, archaea, fungi, and viruses, from an individual soil sample. We used metagenomic and small-subunit RNA-based sequence analysis techniques to compare the estimated richness and evenness of these groups in prairie, desert, and rainforest soils. By grouping sequences at the 97% sequence similarity level (an operational taxonomic unit [OTU]), we found that the archaeal and fungal communities were consistently less even than the bacterial communities. Although total richness levels are difficult to estimate with a high degree of certainty, the estimated number of unique archaeal or fungal OTUs appears to rival or exceed the number of unique bacterial OTUs in each of the collected soils. In this first study to comprehensively survey viral communities using a metagenomic approach, we found that soil viruses are taxonomically diverse and distinct from the communities of viruses found in other environments that have been surveyed using a similar approach. Within each of the four microbial groups, we observed minimal taxonomic overlap between sites, suggesting that soil archaea, bacteria, fungi, and viruses are globally as well as locally diverse.