Regime shifts and heterogeneous trends in malaria time series from Western Kenya Highlands

Large malaria epidemics in the East African highlands during the mid and late 1990s kindled a stream of research on the role that global warming might have on malaria transmission. Most of the inferences using temporal information have been derived from a malaria incidence time series from Kericho. Here, we report a detailed analysis of 5 monthly time series, between 15 and 41 years long, from West Kenya encompassing an altitudinal gradient along Lake Victoria basin. We found decreasing, but heterogeneous, malaria trends since the late 1980s at low altitudes (<1600 m), and the early 2000s at high altitudes (>1600 m). Regime shifts were present in 3 of the series and were synchronous in the 2 time series from high altitudes. At low altitude, regime shifts were associated with a shift from increasing to decreasing malaria transmission, as well as a decrease in variability. At higher altitudes, regime shifts reflected an increase in malaria transmission variability. The heterogeneity in malaria trends probably reflects the multitude of factors that can drive malaria transmission and highlights the need for both spatially and temporally fine-grained data to make sound inferences about the impacts of climate change and control/elimination interventions on malaria transmission.     

Epidemic malaria and warmer temperatures in recent decades in an East African highland

Climate change impacts on malaria are typically assessed with scenarios for the long-term future. Here we focus instead on the recent past (1970-2003) to address whether warmer temperatures have already increased the incidence of malaria in a highland region of East Africa. Our analyses rely on a new coupled mosquito-human model of malaria, which we use to compare projected disease levels with and without the observed temperature trend. Predicted malaria cases exhibit a highly nonlinear response to warming, with a significant increase from the 1970s to the 1990s, although typical epidemic sizes are below those observed. These findings suggest that climate change has already played an important role in the exacerbation of malaria in this region. As the observed changes in malaria are even larger than those predicted by our model, other factors previously suggested to explain all of the increase in malaria may be enhancing the impact of climate change.     

窟野河流域河川基流量变化趋势及其驱动因素

河川基流量的变化是区域气候变化与人类活动的综合反映,其对维持生态系统健康具有重要的意义.以黄土高原水蚀风蚀交错区典型流域窟野河流域为研究对象,利用1959-2005年实测水文、气象资料,基于Chapman-Maxwell数字滤波法的基流量计算,分析窟野河流域河川基流量的变化趋势与演变特征,从气候变化和人类活动两方面探讨了河川基流量变化的驱动因素.结果表明:(1)近50年来,流域内7个时段(全年;春季、夏季、秋季、冬季;汛期、非汛期)的基流量均表现为极显著减少趋势,全年基流量的减少量为0.628 mm/a,并在1980和1996年发生两次明显的突变;(2)与基准期(1959-1979年)相比,水土保持效应期(1980-1995年)的全年日基流量在5％,50％和95％的频率上相对减少率分别为30％,38％和54％,煤炭开发期(1996-2005年)的全年日基流量在5％,50％和95％的频率上相对减少率分别为57％,68％和100％;(3)流域河川基流量减少是气候变化和人类活动共同作用的结果,降水量的变化一定程度影响基流量,但主要驱动因素是流域内大面积连片开采煤炭资源和过量开发利用地下水.     

Evaluating the efficacy of biological and conventional insecticides with the new ‘MCD bottle’ bioassay

Background

Urban malaria is considered to be one of the most significant infectious diseases due to varied socioeconomic problems especially in tropical countries like India. Among the south Indian cities, Chennai is endemic for malaria. The present study aimed to identify the hot spots of malaria prevalence and the relationship with other factors in Chennai during 2005-2011.

Methods

Data on zone-wise and ward-wise monthly malaria positive cases were collected from the Vector Control Office, Chennai Corporation, for the year 2005 to 2011 and verified using field data. This data was used to calculate the prevalence among thousand people. Hotspot analysis for all the years in the study period was done to observe the spatial trend. Association of environmental factors like altitude, population density and climatic variables was assessed using ArcGIS 9.3 version and SPSS 11.5. Pearson’s correlation of climate parameters at 95% and 99% was considered to be the most significant. Social parameters of the highly malaria prone region were evaluated through a structured random questionnaire field survey.

Results

Among the ten zones of Chennai Corporation, Basin Bridge zone showed high malaria prevalence during the study period. The ‘hotspot’ analysis of malaria prevalence showed the emergence of newer hotspots in the Adyar zone. These hotspots of high prevalence are places of moderately populated and moderately elevated areas. The prevalence of malaria in Chennai could be due to rainfall and temperature, as there is a significant correlation with monthly rainfall and one month lag of monthly mean temperature. Further it has been observed that the socioeconomic status of people in the malaria hotspot regions and unhygienic living conditions were likely to aggravate the malaria problem.

Conclusion

Malaria hotspots will be the best method to use for targeting malaria control activities. Proper awareness and periodical monitoring of malaria is one of the quintessential steps to control this infectious disease. It has been argued that identifying the key environmental conditions favourable for the occurrence and spread of malaria must be integrated and documented to aid future predictions of malaria in Chennai.     

Estimation of Coast-Wide Population Trends of Marbled Murrelets in Canada Using a Bayesian Hierarchical Model

Species at risk with secretive breeding behaviours, low densities, and wide geographic range pose a significant challenge to conservation actions because population trends are difficult to detect. Such is the case with the Marbled Murrelet (Brachyramphus marmoratus), a seabird listed as ‘Threatened’ by the Species at Risk Act in Canada largely due to the loss of its old growth forest nesting habitat. We report the first estimates of population trend of Marbled Murrelets in Canada derived from a monitoring program that uses marine radar to detect birds as they enter forest watersheds during 923 dawn surveys at 58 radar monitoring stations within the six Marbled Murrelet Conservation Regions on coastal British Columbia, Canada, 1996–2013. Temporal trends in radar counts were analyzed with a hierarchical Bayesian multivariate modeling approach that controlled for variation in tilt of the radar unit and day of year, included year-specific deviations from the overall trend (‘year effects’), and allowed for trends to be estimated at three spatial scales. A negative overall trend of -1.6%/yr (95% credibility interval: -3.2%, 0.01%) indicated moderate evidence for a coast-wide decline, although trends varied strongly among the six conservation regions. Negative annual trends were detected in East Vancouver Island (-9%/yr) and South Mainland Coast (-3%/yr) Conservation Regions. Over a quarter of the year effects were significantly different from zero, and the estimated standard deviation in common-shared year effects between sites within each region was about 50% per year. This large common-shared interannual variation in counts may have been caused by regional movements of birds related to changes in marine conditions that affect the availability of prey.     

基于时空数据挖掘技术的华东区域暴雨时空特征

基于TRMM 3B42降雨数据,构建5个年尺度的时间序列参数,结合数据挖掘和GIS空间分析技术,分析2003—2015年中国华东区域暴雨时空特征.结果表明: 2003—2015年,研究区年降水量与年暴雨降水量空间分布较为相似,年降水总量呈略微上升的趋势,年暴雨降水比例的时间波动较显著;暴雨降水空间分布在南北方向的差异性明显强于东西方向;年暴雨频次的时间波动较小但空间差异显著;年暴雨降水呈现向北偏移的趋势;5个变量的变化趋势均表现出较强的空间差异性,且大部分像元呈不显著的增加(或减少)趋势.     

我国草地螟发生间歇期的区域格局变化

2010—2016年我国草地螟一直维持总体轻发态势。为从长时间序列上分析连续轻发年份的历史地位,以1979年以来第2、3个暴发周期及其之间的间歇期为对照,分析了2010—2016年草地螟连续轻发的特点,即全国种群规模维持在历史低位,西北地区发生面积和比率加大,发生区域向西部缩减,提示我国草地螟种群发生已进入间歇期。分析了1979—2016年时间序列上华北、东北、西北3个地区的发生情况对全国的影响,结果表明:(1)华北地区、东北地区的发生面积自然对数值与全国发生面积自然对数值呈极显著的线性正相关,即华北、东北地区与全国发生趋势的年际波动完全一致;(2)西北地区发生面积自然对数值与全国的线性相关性达显著水平,但在不同的历史阶段西北地区与全国的波动趋势有明显差别;(3)自第3个暴发周期的2005年以后,西北地区的波动曲线逐渐与全国趋同,推测这一变化与新疆种群的建立和发展有关。     

近35年官厅水库消落带消涨特征及分区

水库消落带作为重要的生态交错带,是深入分析生态要素内在作用机制的特殊区域。以华北内陆大型水库——官厅水库为研究对象,选择1979—2013年Landsat MSS/TM/ETM+/OLI影像作为数据源,分析35年来官厅水库消落带的消涨特征、时空分布差异及其变化趋势,在此基础上进行消落带淹水时长和淹水频次的分区研究,揭示消落带生态结构的形成过程。研究结论如下:(1)近35年来,官厅水库水位落差较大,达8.19m,水位变化分为3个特征时期:1979—1996年,涨落周期约为4—5a的间歇涨落期;1996—2007年,水位持续下降达7.12m的持续萎缩期;2007—2013年,涨落周期为2 a,且年际变化差稳定在0.75m的频繁涨落期。(2)35年来,官厅水库水位消涨形成118.31km~2的消落带,对应3个特征时期形成消落带的面积依次为80.20km~2,76.81 km~2和19.89km~2。间歇涨落期形成的消落带主要分布在永定河河口及平坦的康西草原一带;持续萎缩期的消落带有明显向西北河岸带扩张的趋势;频繁涨落期的消落带以库心区域水位回升为主,面积仅19.89 km~2。(3)1979—2013年,基于淹水累计时长的分区中,消落带整体上表现为淹水累计时长随边岸向库区中心逐渐递增的趋势,25.85%的消落带淹水时长不足5a,71.77%的消落带淹水时长大于16 a,但随着淹水时长减少,消落带区域植物旱化现象突出,同时植被群落盖度和多样性降低。淹水频次分区中,相同淹水频次的区域在空间上离散分布,一次淹水区面积为32.79km~2,在消落带中所占比例优势明显,但累计淹水时长差异同样显著,分别为2 a和26 a,淹水最为频繁的消落带共经历了9次淹水过程;分区中的土壤有机质含量差异表明,淹水频次越高越有利于土壤有机质的积淀。     

Hot topic or hot air? Climate change and malaria resurgence in East African highlands

Climate has a significant impact on malaria incidence and we have predicted that forecast climate changes might cause some modifications to the present global distribution of malaria close to its present boundaries. However, it is quite another matter to attribute recent resurgences of malaria in the highlands of East Africa to climate change. Analyses of malaria time-series at such sites have shown that malaria incidence has increased in the absence of co-varying changes in climate. We find the widespread increase in resistance of the malaria parasite to drugs and the decrease in vector control activities to be more likely driving forces behind the malaria resurgence.     

Decreasing Fires in Mediterranean Europe

Forest fires are a serious environmental hazard in southern Europe. Quantitative assessment of recent trends in fire statistics is important for assessing the possible shifts induced by climate and other environmental/socioeconomic changes in this area. Here we analyse recent fire trends in Portugal, Spain, southern France, Italy and Greece, building on a homogenized fire database integrating official fire statistics provided by several national/EU agencies. During the period 1985-2011, the total annual burned area (BA) displayed a general decreasing trend, with the exception of Portugal, where a heterogeneous signal was found. Considering all countries globally, we found that BA decreased by about 3020 km² over the 27-year-long study period (i.e. about -66% of the mean historical value). These results are consistent with those obtained on longer time scales when data were available, also yielding predominantly negative trends in Spain and France (1974-2011) and a mixed trend in Portugal (1980-2011). Similar overall results were found for the annual number of fires (NF), which globally decreased by about 12600 in the study period (about -59%), except for Spain where, excluding the provinces along the Mediterranean coast, an upward trend was found for the longer period. We argue that the negative trends can be explained, at least in part, by an increased effort in fire management and prevention after the big fires of the 1980’s, while positive trends may be related to recent socioeconomic transformations leading to more hazardous landscape configurations, as well as to the observed warming of recent decades. We stress the importance of fire data homogenization prior to analysis, in order to alleviate spurious effects associated with non-stationarities in the data due to temporal variations in fire detection efforts.     

Continued Decline of Malaria in The Gambia with Implications for Elimination

Background

A substantial decline in malaria was reported to have occurred over several years until 2007 in the western part of The Gambia, encouraging consideration of future elimination in this previously highly endemic region. Scale up of interventions has since increased with support from the Global Fund and other donors.

Methodology/Principal Findings

We continued to examine laboratory records at four health facilities previously studied and investigated six additional facilities for a 7 year period, adding data from 243,707 slide examinations, to determine trends throughout the country until the end of 2009. We actively detected infections in a community cohort of 800 children living in rural villages throughout the 2008 malaria season, and assayed serological changes in another rural population between 2006 and 2009. Proportions of malaria positive slides declined significantly at all of the 10 health facilities between 2003 (annual mean across all sites, 38.7%) and 2009 (annual mean, 7.9%). Statistical modelling of trends confirmed significant seasonality and decline over time at each facility. Slide positivity was lowest in 2009 at all sites, except two where lowest levels were observed in 2006. Mapping households of cases presenting at the latter sites in 2007–2009 indicated that these were not restricted to a few residual foci. Only 2.8% (22/800) of a rural cohort of children had a malaria episode in the 2008 season, and there was substantial serological decline between 2006 and 2009 in a separate rural area.

Conclusions

Malaria has continued to decline in The Gambia, as indicated by a downward trend in slide positivity at health facilities, and unprecedented low incidence and seroprevalence in community surveys. We recommend intensification of control interventions for several years to further reduce incidence, prior to considering an elimination programme.     

Protection against malaria morbidity: Near-fixation of the α-thalassemia gene in a Nepalese population

We have previously reported that the Tharu people of the Terai region in southern Nepal have an incidence of malaria about sevenfold lower than that of synpatric non-Tharu people. In order to find out whether this marked resistance against malaria has a genetic basis, we have now determined in these populations the prevalence of candidate protective genes and have performed in-vitro cultures of Plasmodium falciparum in both Tharu and non-Tharu red cells. We have found significant but relatively low and variable frequencies of beta-thal, beta S, G6PD (-), and Duffy (a-b-) in different parts of the Terai region. The average in-vitro rate of invasion and of parasite multiplication did not differ significantly in red cells from Tharus versus those from non-Tharu controls. By contrast, the frequency of alpha-thalassemia is uniformly high in Tharus, with the majority of them having the homozygous alpha-/alpha-genotype and an overall alpha-thal gene (alpha-) frequency of .8. We suggest that holoendemic malaria has caused preferential survival of subjects with alpha-thal and that this genetic factor has enabled the Tharus as a population to survive for centuries in a malaria-holoendemic area. From our data we estimate that the alpha-thal homozygous state decreases morbidity from malaria by about 10-fold. This is an example of selection evolution toward fixation of an otherwise abnormal gene.     

Is the incidence of malaria decreasing in endemic area of Turkey?

Much international business and tourism travels occur, as well as the deployment of soldiers to other places. The aim of this study was both to determine incidence of malaria in the military hospital, Diyarbakir, southeast region of Turkey, and to point out the incidence of this disease. During the study period (1997-2004), 609 cases were found in a military hospital, which is in an endemic area for vivax malaria. This article review trends in current malaria status as well as possible factors for the decreasing prevalence throughout the study period.     

Cutaneous malignant melanoma in Scotland: incidence,survival, and mortality, 1979-94. The Scottish Melanoma Group.

OBJECTIVE: To determine the changing incidence of and mortality from cutaneous malignant melanoma in Scotland from 1979 to 1994. DESIGN: Detailed registration of clinical and pathological features, surgical and other treatment, and follow up of all cases of cutaneous malignant melanoma diagnosed from 1979 to 1994 and registered with specialist database for Scotland. SETTING: Scotland. SUBJECTS: 6288 patients with invasive primary cutaneous malignant melanoma diagnosed between 1 January 1979 and 31 December 1994. RESULTS: The annual age standardised incidence of cutaneous malignant melanoma rose significantly from 3.5 to 7.8 per 100,000 per year in men and from 6.8 to 12.3 per 100,000 per year in women (P < 0.001 for both). World standardised rates increased from 2.7 to 6.0 per 100,000 per year in men and 4.6 to 8.50 per 100,000 in women. The incidence of melanoma continued to increase significantly in men of all ages during the study, but the rate stabilised in women after 1986. Mortality from cutaneous malignant melanoma was 1.3 per million per annum in men in 1979, rising to 2.3 per million per annum in 1994 (P < 0.01); it was 2.4 per million per annum in women in 1979, falling to 1.9 per million per annum in 1994 (P = 0.09). The underlying mortality trends showed a continuing rise for men but a downward trend for women that was not significant (P = 0.09). In men, melanoma free survival was 69% at 5 years and 61% at 10 years; in women the corresponding rates were 82% and 75%. Younger patients had higher survival rates, which were not entirely explained by thinner tumours. Over the 15 year period, survival rates improved by 12% overall, only partly owing to thinner tumours. CONCLUSIONS: In Scotland the incidence of melanoma in women has stabilised, while mortality associated with melanoma in women shows a downward trend.     

西安4种落叶乔木物候期对气候变化的响应

以西安1979—2018年的气候资料和植物物候观测资料为基础,采用分段回归和趋势倾向率等方法,分析了毛白杨(Populus tomentosa)、杜梨(Pyrus betulifolia)、七叶树(Aesculus chinensis)和灯台树(Bothrocaryum controversum)4种落叶乔木展叶盛期和叶全变色期的生长趋势,使用偏相关分析探讨了气温、降水和日照时数与物候期的关系并通过偏最小二乘回归(Partial Least Squares, PLS)判断气候变量对物候期的综合影响。结果表明：(1)1979—2018年,4种乔木的生长季长度延长,整体表现为春季物候期提前,秋季物候期推迟;(2)展叶盛期物候指标与叶全变色期物候指标,转折均发生在1982年;转折后,物候特征变化显著,春季物候的提前速率和秋季物候的推迟速率加快,展叶盛期平均提前3.8d/10a,叶全变色期平均推迟4.7d/10a;(3)展叶盛期与春季气温表现为极显著负相关,叶变色期与秋季气温表现为显著正相关;降水对植物物候的影响不显著;春季物候与日照时数呈现极显著负相关关系,秋季物候期与日照时数呈不显著正相关...     

Surgical scientific publication and the 1991-1995 war in Croatia

The aim of this study was to evaluate surgical scientific publication in relation to the 1991-1995 war in Croatia, based on the articles indexed in Medline database that were published in 1980-2005 period. The number of articles was extracted from PubMed and analysed with trend analysis, which is preferred analytic approach over calculation of crude publication rates. The results indicate sporadic pre-war output, which was almost completely reduced by the onset of war. During wartime, a significant increasing trend in the number of published surgical articles that were related to warfare was detected (p = 0.003). During the post-war period a gradual shift towards surgical articles that were not related to warfare was detected, also marked by the significant increasing trend (p = 0.027). Both trends were significantly steeper than the overall Croatian biomedical output, suggesting that surgical scientific articles were being published more dynamically than in other biomedical areas in Croatia. The results suggest that war in Croatia has had a strong modifying effect on the surgical scientific output.     

Regional trends for bud burst and flowering of woody plants in Norway as related to climate change

Data series for bud burst, beginning of flowering and petal fall for 20 species of deciduous trees and conifers at four sites in different regions of southern Norway have been analysed and related to temperature series. On average, the spring phenophases occurred 7 days earlier during the period 1971-2005. The most significant linear trends were observed for the earliest phases. The trends in this period were compared with trends in other periods, the longest one starting in 1927. Those starting in cold decades and ending in 2005 were in most instances statistically significant, whereas hardly any significant trend appeared for series starting in warm decades. This fact showed that the results of trend studies are very sensitive to the choice of starting year. There were significant decadal variations in 40% of the series. The dates of occurrence of the phenophases, varying from the first days of May to the first days of June, correlated with seasonal temperature series, in most cases strongest to mean temperatures for the seasons March-May and April-May. The North Atlantic Oscillation Index (NAOI) for January and February appeared to have some predictive power for the date of occurrence of the recorded phases. The basis for this may be that the oscillations described by the index are of importance for the fulfilment of physiological chilling requirements needed to break bud dormancy. The same genotypes of the trees were grown in region West Norway and in Central Norwegian region; during the period 1965-2005 the trends towards earlier bud burst were more pronounced and steeper at the western site.     

Fine-mapping using the weighted average method for a case-control study

We present a new method for fine-mapping a disease susceptibility locus using a case-control design. The new method, termed the weighted average (WA) statistic, averages the Cochran-Armitage (CA) trend test statistic and the difference between the Hardy-Weinberg disequilibrium test statistic for cases and controls (the HWD trend). The main characteristics of the WA statistic are that it improves on the weaknesses, and maintains the strengths, of both the CA trend test and the HWD trend test. Data from three different populations in the Genetic Analysis Workshop 14 (GAW14) simulated dataset (Aipotu, Karangar, and Danacaa) were first subjected to model-free linkage analysis to find regions exhibiting linkage. Then, for fine-scale mapping, 140 SNPs within the significant linkage regions were analyzed with the WA test statistic on replicates of the three populations, both separately and combined. The regions that were significant in the multipoint linkage analysis were also significant in this fine-scale mapping. The most significant regions that were obtained using the WA statistic were regions in chromosome 3 (B03T3056-B03T3058, p-value < 1 x 10(-10)) and chromosome 9 (B09T8332-B09T8334, p-value 1 x 10(-6)). Based on the results of the simulated GAW14 data, the WA test statistic showed good performance and could narrow down the region containing the susceptibility locus. However, the strength of the signal depends on both the strength of the linkage disequilibrium and the heterozygosity of the linked marker.     

Methodology for estimating the abundance of rare animals: seabird nesting on north east Herald Cay

We discuss the problem of estimating the number of nests of different species of seabirds on North East Herald Cay based on the data from a 1996 survey of quadrats along transects and data from similar past surveys. We consider three approaches based on different plausible models, namely a conditional negative binomial model that allows for additional zeroes in the data, a weighting approach (based on a heteroscedastic regression model), and a transform-both-sides regression approach. We find that the conditional negative binomial approach and a linear regression approach work well but that the transform-both-sides approach should not be used. We apply the conditional negative binomial and linear regression approaches with poststratification based on data quality and availability to estimate the number of frigatebird nests on North East Herald Cay.