Evolution of an MHC class Ia gene fragment in four North American Morone species

A nucleotide sequence analysis of a fragment of a Morone MHC class Ia gene detected high levels of polymorphism in striped bass Morone saxatilis, white perch Morone americana and yellow bass Morone mississippiensis. Extremely low levels of MHC diversity, however, were detected in white bass Morone chrysops, suggesting the possibility of a severe population bottleneck for this species.     

Isolation and characterization of 149 novel microsatellite DNA markers for striped bass,Morone saxatilis,and cross‐species amplification in white bass,Morone chrysops,and their hybrid

To support detailed genetic analysis of striped bass (Morone saxatilis) and white bass (Morone chrysops), we isolated 153 microsatellite loci from repeat‐enriched striped bass DNA libraries. Of these, 147 markers amplified in striped bass (average 4.7 alleles per locus) and 133 in white bass (average 2.2 alleles per locus). One hundred twenty‐two markers amplified in their hybrid. Development of new microsatellite markers will facilitate evaluations of genetic structure in wild populations and will support pedigree analysis and linkage mapping for selective breeding.     

Macrohabitat associations of fishes in shallow waters of the Detroit River

Seasonal variation in large‐scale habitat selection by fishes in shallow, Canadian waters of the Detroit River was examined. Fish communities were compared among three river segments (upstream, middle and downstream) consisting of areas of shallow water habitat separated by wide hydrologic barriers of deep, flowing water and between inshore and offshore areas. In spring, the most unique, diverse and abundant fish assemblages were found at inshore sites in the middle segment where the largest remaining wetland habitats are located. Fishes used inshore habitat to spawn and probably avoided offshore areas because macrophyte cover was not available in spring. In summer, juvenile gizzard shad Dorosoma cepedianum and white bass Morone chrysops were observed in high densities in the upstream segment, probably migrating downstream from Lake St Clair. There was little difference in the fish assemblage among macrohabitats in autumn. The upstream segment appeared to be the most degraded, because it contained no species that were not found in the other segments, had a paucity of uncommon species and had significantly more non‐native species. This state was attributed to the infilling of coastal wetlands by urban land use and a resulting loss of habitat heterogeneity. The middle segment, with the only remaining wetland habitats, had the greatest occurrence of uncommon species and the only species at risk found in this study. Conservation and restoration efforts should be greatest for wetlands; however, shallow offshore areas provide important fish habitat in summer and autumn.     

Predation on fish eggs by white perch,Morone americana,in western Lake Erie

Synopsis The white perch,Morone americana, is an east coast estuarine species that invaded Lake Erie in the 1950's, but did not increase in abundance until the mid 1970's. We studied its distribution and feeding during spawning in the Sandusky River, Ohio in 1981–1983. White perch were present in the area from early April through May, but abundance was highest on bedrock riffles about 45 km upstream from Lake Erie. Spawning activity peaked in the last week of April when temperatures approached 18°C. White perch collected in early April had eaten walleye,Stizostedion vitreum vitreum, eggs. As spawning activity of white perch increased, feeding activity declined, and most fish collected during late April contained no food. Egg predation increased again in May, but the eggs eaten then were those of white bass,Morone chrysops, white perch, and possibly other species. We have no evidence that egg predation by white perch has affected walleye or white bass recruitment, but it could become a problem if white perch continue to increase in abundance.     

A Microsatellite Linkage Map of Striped Bass (Morone saxatilis) Reveals Conserved Synteny with the Three-Spined Stickleback (Gasterosteus aculeatus)

The striped bass (Morone saxatilis) and its relatives (genus Morone) are of great importance to fisheries and aquaculture in North America. As part of a collaborative effort to employ molecular genetics technologies in striped bass breeding programs, we previously developed nearly 500 microsatellite markers. The objectives of this study were to construct a microsatellite linkage map of striped bass and to examine conserved synteny between striped bass and three-spined stickleback (Gasterosteus aculeatus). Of 480 microsatellite markers screened for polymorphism, 289 informative markers were identified and used to genotype two half-sib mapping families. Twenty-six linkage groups were assembled, and only two markers remain unlinked. The sex-averaged map spans 1,623.8 cM with an average marker density of 5.78 cM per marker. Among 287 striped bass microsatellite markers assigned to linkage groups, 169 (58.9%) showed homology to sequences on stickleback chromosomes or scaffolds. Comparison between the stickleback genome and the striped bass linkage map revealed conserved synteny between these two species. This is the first linkage map for any of the Morone species. This map will be useful for molecular mapping and marker-assisted selection of genes of interest in striped bass breeding programs. The conserved synteny between striped bass and stickleback will facilitate fine mapping of genome regions of interest and will serve as a new resource for comparative mapping with other Perciform fishes such as European sea bass (Dicentrarchus labrax), gilthead sea bream (Sparus aurata), and tilapia (Oreochromis ssp.).     

An effective method for trapping scavenging seabirds at sea

ABSTRACT Most studies of seabirds that involve trapping and marking birds are carried out at breeding colonies. This bias toward the breeding period and colony‐based research is partially caused by difficulties in capturing birds at sea. From 2005 to 2007, we used a cast net thrown by hand from a fishing boat to capture albatrosses and petrels at sea in the southwestern Atlantic Ocean. About 500 birds of 13 species were captured, ranging in size from the 30‐g Wilson's Storm‐petrel (Oceanites oceanicus) to the 10‐kg Wandering Albatross (Diomedea exulans). Cast nets are potentially useful for capturing any seabird that can be attracted close to fishing vessels by bait, such as sardines, squid, offal, or shark liver, thrown into the water. Our method was most effective for capturing bold species, such as Cape (Daption capense), Spectacled (Procellaria conspicillata), and White‐chinned (Procellaria aequinoctialis) petrels and Great Shearwaters (Puffinus gravis), but was not effective for capturing shy species, such as Cory's (Calonectris diomedea), Cape Verde (Calonectris edwardsii) and Manx (Puffinus puffinus) shearwaters, species that rarely sit on the water, such as Wilson's Storm‐petrels, Thin‐billed (Pachyptila belcheri) and Antarctic (Pachyptila desolata) prions and Atlantic Petrels (Pterodroma incerta), and species with excellent diving abilities, such as Sooty Shearwaters (Puffinus griseus). For many species of seabirds, cast nets would likely be more efficient for capturing large numbers of birds than other methods, such as hoop nets.     

Spatial distribution of fishes and decapods in eelgrass (Zostera marina L.) and sandy habitats of a New Brunswick estuary, eastern Canada

We investigated spatial distribution of fishes and decapods in eelgrass (Zostera marina L.) and non-vegetated sandy habitats in Kouchibouguac Estuary, New Brunswick, Canada. During the ice-free season in 1999 and 2000, mobile fauna were sampled using fyke nets, minnow traps and an epibenthic sled. In general, fishes and decapods were more abundant and diverse (species richness) in eelgrass beds than in nearby sandy habitats, although the trend in abundance of decapods was not statistically significant. Abundance was greater at night than during daylight hours for most species. Atlantic tomcod (Microgadus tomcod), winter flounder (Pleuronectes americanus) and sand shrimp (Crangon septemspinosa) dominated night/crepuscular catches, whereas threespine stickleback (Gasterosteus aculeatus) and cunner (Tautogolabrus adspersus) predominated in diurnal periods. The nursery function of eelgrass habitat was most evident for juvenile white hake (Urophycis tenuis) and small cunners (<3 cm), which were found only in such habitat. This study is one of the few to have investigated the ecological importance of eelgrass habitats for mobile faunal communities in eastern Canada.     

A phylogeny of the temperate seabasses (Moronidae) characterized by a translocation of the mt-nd6 gene

The entire mitochondrial genome of the striped bass Morone saxatilis was sequenced together with the mitochondrial (mt) control regions of the white bass Morone chrysops, white perch Morone americana, yellow bass Morone mississippiensis, spotted seabass Dicentrarchus punctatus, European seabass Dicentrarchus labrax and the Japanese seabass Lateolabrax japonicus. The resultant 17 580 base pair circular genome of M. saxatilis contains 38 genes (13 proteins, 23 transfer RNAs and two ribosomal RNAs) and a control region bordered by the proline and phenylalanine mitochondrial tRNAs. Gene arrangement was similar to other vertebrates, except that the mt-nd6 gene was found within the control region rather than the canonical position between the mt-nd5 and mt-cyb genes. This translocation was found in all the Morone and Dicentrarchus species studied without functional copies or pseudogenes in the ancestral position. In L. japonicus, the mt-nd6 gene was found in the canonical position without evidence of an mt-nd6 gene in the control region. A Bayesian analysis of these and published mt-nd6 sequences from 45 other Perciformes grouped the Morone and Dicentrarchus species monophyletically with a probability of 1·00 with respect to L. japonicus and all other perciforms, and placed the Dicentrarchus species in the basal position. These data reinforce current placement of L. japonicus outside the Moronidae and provide a clear evolutionary character to define this family. The phylogeny of the Moronidae presented here also supports the hypothesis of an anadromous common ancestor to this family that gave rise to the North American estuarine and freshwater species. A series of tandem repeats previously reported in M. saxatilis was found in the control region of all Morone species between the mt-nd6 and mt-rnr1 genes, but not in either Dicentrarchus species, which reinforces the continued use of these two separate genera.     

Dispersion of the horned grebe Podiceps auritus (L.) (Aves) on Lake Myvatn, Iceland, in late summer

Studies on habitat selection by waterbirds usually describe large-scale distribution of populations or species but the dispersion within lakes is an understudied aspect. Detailed mapping of horned grebes (Podiceps auritus (L.)) on the North Basin of Lake Myvatn, Iceland, was carried out in late summer 2000 in order to compare their dispersion with water depth and submerged vegetation. Depth and vegetation were measured on sampling sites that were evenly distributed over the North Basin, and the information obtained compared to the distribution of the grebes. Four species of submerged macrophytes dominated in the North Basin; Myriophyllum spicatum, M. alterniflorum, Potamogeton filiformis and P. perfoliatus, mainly at depths <2.5 m. The grebes seemed to prefer to dive in shallow areas vegetated with stands of Myriophyllum spp. Densities of three-spined sticklebacks Gasterosteus aculeatus were compared in stands of M. spicatum and P. filiformis in order to estimate food availability. No difference was found, so the sticklebacks could not explain the preference of the grebes for areas vegetated with Myriophyllum spp. Nevertheless, this study indicates that shallow areas, vegetated with Myriophyllum spp., are important feeding areas for the horned grebe.     

Microsatellite DNA markers for parental assignment in hybrid striped bass (Morone saxatilis × Morone chrysops)

Development of nine polymorphic microsatellites from a genomic library of hybrid striped bass (female Morone chrysops × male Morone saxatilus) DNA is described. Breeding of hybrid striped bass for aquaculture is based largely on breeding wild fish. Molecular markers such as microsatellites will be useful tools for developing broodstock, estimating heritability for production traits, and selective breeding via marker‐assisted selection. The nine polymorphic microsatellites include six dinucleotide and three complex repeat motifs. The number of alleles detected among a sample of 10 individuals of each species was relatively low. All polymerase chain reaction primer pairs also amplified products in the sea bass Dicentrarchus labrax.     

Species richness,composition, and abundance of fish larvae and juveniles inhabiting natural and developed shorelines of a glacial Iowa lake

Synopsis Young-of-the-year fish communities in naturally vegetated sites were compared with those inhabiting nearby sites where lakeshore development (i.e., construction of homes, boat docks, and beaches) reduced nearshore macrophyte species richness and abundance. The study was conducted in a 2266 hectare, glacially formed, eutrophic lake in northwestern Iowa during the summers of 1987 and 1988. Study sites were divided into 3 depth zones, and fishes were collected by seining (0–1 m), plexiglass traps (1–2 m), and a nonclosing Tucker trawl (2–3 m). Species richness and total fish abundance were consistently greater in natural than in developed sites in both nearshore (0–1 m) and intermediate (1–2 m) depth zones, but differed little between natural and developed sites in the offshore (2–3 m) depth zone. Nearly 50% of the species sampled, including yellow perch Perca flavescens and bluegill Lepomis macrochirus, inhabited limnetic areas as larvae before migrating inshore as juveniles. Eighteen of the 20 fish species collected as juveniles were in greater abundance in natural than in developed sites. Smallmouth bass Micropterus dolomieui was the only game species consistently found in equal or greater abundance in developed sites. Within all sites, juvenile fishes were generally most abundant where macrophyte abundance and species richness were greatest. Findings from this study demonstrate the importance of nearshore aquatic vegetation to fishes during their first summer of life. If nearshore vegetation beds of lakes continue to be regarded as a nuisance and indiscriminately removed, important fish nursery habitat will be lost. The short-term result will likely be reduced year-class strength of vegetation-dependent species. More importantly, the long-term effects will be changes in fish community richness and composition which will, in turn, alter the lake's fishery.     

Juvenile white sturgeon (Acipenser transmontanus) habitat and distribution in the Lower Fraser River, downstream of Hope, BC, Canada

The primary objective of this study was to identify and characterize juvenile white sturgeon (Acipenser transmontanus) habitat in the Lower Fraser River downstream of Hope, BC, Canada. A secondary objective was to estimate the juvenile white sturgeon population in the Lower Fraser River. A total of 1867 white sturgeon was captured with gill nets at 26 sites in the Lower Fraser River. The greatest numbers of sturgeon were caught in three sloughs; all but three sturgeon were captured in the June to August period. These three sloughs all had water deeper than 5 m and current that was multidirectional. Turbidity ranged greatly from 1.5 NTU (Nephelometric Units) to 67.0 NTU and the substrate of most sites was fine sediments, fine sand, silt and clay. Stomach contents were mysid shrimp (Mysidacea), midge larvae (Chironomidae) and peamouth chub (Mylocheilus caurinus). We identified three of 26 sites with appreciable numbers of juvenile sturgeon, identified water quality parameters of these sites, identified any incidental species that might be prey and also determined that between 1985 and 1993 the juvenile white sturgeon population had declined.     

Use of cellular oncogene probes to identify Morone hybrids.

We tested the ability of cellular oncogene (c-onc) probes to identify F1 hybrids and the lineage of known backcrosses within the fish genus Morone. Total DNA was isolated from five to 14 individuals per North American Morone species (striped bass, white bass, white perch, and yellow bass). The DNA was digested with two restriction enzymes, Eco RI and Hin dIII, Southern blotted, and hybridized to six different c-onc probes including v-abl, v-erb B, c-myc, c-H-ras, c-K-ras, and v-src. We found fixed genotypic differences among the four species for all six probes in single restriction enzyme digests. The heritability of these nuclear DNA genotypes was evaluated in hatchery-produced F1 Morone hybrids (striped bass x white bass and striped bass x white perch) tested with the six informative single probe/restriction enzyme combinations. All F1 individuals exhibited heterozygosity in all diagnostic nuclear DNA fragments, confirming the Mendelian inheritance of these genotypes in these fish. Furthermore, analysis of these nuclear DNA genotypes in hatchery-produced backcrosses of F1 hybrids striped bass x (white bass x striped bass) detected both recombinant and parental genotypes at all six polymorphic c-onc sequences. The lineage of suspected Morone hybrids of unknown descent collected from Lewis Smith Lake, Alabama, and from the Occoquan River, Virginia, was determined using the c-onc probes. Our results suggest that c-onc probes are suitable markers to unequivocally identify F1 hybrids and backcrosses and to quantify introgression in natural populations of fishes. The addition of RFLP analysis of mtDNA provided a complete ancestral history of individual fish.     

Conserved and Variant Molecular and Functional Features of Multiple Egg Yolk Precursor Proteins (Vitellogenins) in White Perch (Morone americana) and other Teleosts

Three complete cDNAs encoding different forms of vitellogenin (Vtg) were isolated from a white perch (Morone americana) liver cDNA library and characterized with respect to immunobiochemical and functional features of the three Vtgs and their product yolk proteins (YPs) in this species and in the congeneric striped bass (Morone saxatilis). The two longest cDNAs encoded Vtgs with a complete suite of yolk protein domains that, based on comparisons with vtg sequences from other species, were categorized as VtgAa and VtgAb using the current nomenclature for multiple teleost Vtgs. The shorter cDNA encoded a Vtg that lacked a phosvitin domain, had a shortened C-terminus, and was categorized as VtgC. Mapping of peptide sequences from the purified Vtgs and their derived YPs to Vtg sequences deduced from the cDNAs definitively identified the white perch VtgAa, VtgAb, and VtgC proteins. Detailed comparisons of the primary structures of each Vtg with partial or complete sequences of Morone yolk proteins or of Vtgs from other fishes revealed conserved and variant structural elements of teleost Vtgs with functional significance, including, as examples, signal peptide cleavage sites, dimerization sites, cathepsin D protease recognition sites, and receptor-binding domains. These comparisons also yielded an interim revision of the classification scheme for multiple teleost Vtgs. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The role of trophic bottlenecks in stunting: a field test of an allocation model of growth and reproduction in yellow perch, Perca flavescens

Synopsis Stunting in freshwater fish populations may be due to low availability of one or more prey components within their diet. If the limiting prey constitute a trophic level (i.e. zooplankton, benthos, or fish), we define the phenomenon as a trophic bottleneck. Growth of a non-stunted population of yellow perch, Perca flavescens, was simulated using an allocation model based on reported ontogenetic shifts in diet (planktivory to benthivory to piscivory). The model was then perturbed by limiting the available ration individually for each of the three feeding types. The resulting simulated growth curves all reflected lower growth rates than the unperturbed state and the shape of the curve differed between the limited food types. Only the reduced benthic ration produced a simulated growth that matched that observed for the stunted yellow perch of Lac Hertel (Québec). To test the hypothesis that benthic ration was limiting growth in Lac Hertel, all the fish species in the lake were sampled for diet composition and total length at age. We predicted that species feeding upon benthic invertebrates should exhibit the slow growth characteristic of stunting (based on the results of the allocation model). Of the seven fish species found in Lac Hertel, four were stunted: yellow perch, pumpkinseed, Lepomis gibbosus, rock bass, Ambloplites rupestris, and brown bullhead, Ictalurus nebulosus. Three species were non-stunted: northern pike, Esox lucius, golden shiner, Notemigonus crysoleucas, and white sucker, Catostomus commersoni. All stunted species fed on benthic invertebrates and all non-stunted species, except the white sucker, did not feed upon benthos. The prediction of the allocation model was thus supported.     

Climate response among growth increments of fish and trees

Significant correlations were found among the annual growth increments of stream fish, trees, and climate variables in the Ozark region of the United States. The variation in annual growth increments of rock bass (Ambloplites rupestris) from the Jacks Fork River was significantly correlated over 22 years with the ring width of four tree species: white oak (Quercus alba), post oak (Quercus stellata), shortleaf pine (Pinus echinata) and eastern red cedar (Juniperus virginiana). Rock bass growth and tree growth were both significantly correlated with July rainfall and stream discharge. Variations in annual growth of smallmouth bass (Micropterus dolomieu) from four streams were significantly correlated over 29 years (1939–1968) with mean May maximum air temperature but not with tree growth. The magnitude and significance of correlations among growth increments from fish and trees imply that conditions such as topography, stream gradient, organism age, and the distribution of a population relative to its geographic range can influence the climatic response of an organism. The timing and intensity of climatic variables may produce different responses among closely related species.     

Linking fish population dynamics to habitat conditions: insights from the application of a process-oriented approach to several Great Lakes species

One of the major challenges facing fishery scientists and managers today is determining how fish populations are influenced by habitat conditions. Many approaches have been explored to address this challenge, all of which involve modeling at one level or another. In this paper, we explore a process-oriented model approach whereby the critical population processes of birth and death rates are explicitly linked to habitat conditions. Application of this approach to five species of Great Lakes fishes including: walleye (Sander vitreus), lake trout (Salvelinus namaycush), smallmouth bass (Micropterus dolomieu), yellow perch (Perca flavescens), and rainbow trout (Onchorynchus mykiss), yielded a number of insights into the modeling process. One of the foremost insights is that processes determining movement and transport of fish are critical components of such models since these processes largely determine the habitats fish occupy. Because of the importance of fish location, an individual-based model appears to be a nearly inescapable modeling requirement. There is, however, a paucity of field-based data directly relating birth, death, and movement rates to habitat conditions experienced by individual fish. There is also a paucity of habitat information at a fine temporal and spatial scale for many important habitat variables. Finally, the general occurrence of strong ontogenetic changes in the response of different life stages to habitat conditions emphasizes the need for a modeling approach that considers all life stages in an integrated fashion.     

Behavioural response of fishes to increasing pH and dissolved oxygen: field and laboratory observations

• 1 Freshwater fish assemblages were sampled quantitatively before, during, and after naturally produced conditions of elevated pH and dissolved oxygen (DO) that occurred for 2–6h in two dense macrophyte beds. Field observations were followed by 3–4-h laboratory behavioural experiments in which banded killifish (Fundulus diaphanus), bluegill (Lepomis macrochirus), and striped bass (Morone saxatilis) were exposed to gradually increasing levels of: (i) pH; (ii) DO; and (iii) pH and DO.
• 2 Field results indicated that the macrophyte bed dominated by Hydrilla verticillata had a higher fish density than the mixed-species (H. verticillata and Vailisneria americana) bed, but beds did not differ significantly in fish species richness or biomass. Within beds, diel changes in fish species composition, richness, density and biomass were minor.
• 3 In the laboratory, avoidance of pH levels exceeding 9.5 was exhibited by all species tested. No significant response was observed to either DO increase treatments, or to pH and DO increase treatments.
• 4 Results suggest fishes do not avoid areas, such as dense macrophyte beds, when high pH levels (9.5–10.0) are accompanied by high DO levels (200–260% saturation).