Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K. and Walter, P. Molecular biology of the cell. 4th edn.

First edition, 1983; 2nd edition, 1989; 3rd edition, 1994; 4thedition, 2002. Any book that appears in so many editions insuch a relatively short space of time must be doing somethingright. And so it is, for Molecular Biology of the Cell (‘MBoC’as the authors refer to it) is arguably setting the pace—andthe standard—that other textbooks on the subject mustaspire to. Although not familiar with the previous incarnationsof MBoC, I do note that the line-up     

Lateral Root Anlage Development in Excised Roots of Vicia faba L., Pisum sativum L., Zea mays L. and Phaseolus vulgaris L.

The development of lateral root primordia has been investigatedin excised roots of Vicia faba, Pisum sativum, Zea mays andPhaseolus vulgaris cultured in White's medium supplemented with2 per cent sucrose and compared with previously published dataon such development in primaries of the corresponding intactplants (control roots). Primordia were produced in each batchof excised roots over the 6 day culture period but at a lowerrate (number day^–1) than in the controls. Such primordia in cultured roots of Zea and Phaseolus completedtheir development and grew out as lateral roots over a periodsimilar in length to that found in the controls, but with acell number of only about 33 per cent of that attained at thetime of secondary emergence in the primaries of the latter roots.These lower cell numbers were at least partly a reflection ofincreases in mean cell doubling time over the period of anlagedevelopment investigated in the excised roots relative to thecorresponding values found in the controls. Primordia initiated in excised roots of Pisum and Vicia didnot complete their development in culture, i.e. no lateral rootsemerged and arrest took place with cell numbers of only 37 (Pisum)and 17 (Vicia) per cent of the numbers determined at the timeof secondary root emergence in the controls. Such arrested primordiahad few nuclei in S and none in mitosis. Moreover, at leastin Pisum, the frequency distribution of the relative DNA contentof the nuclei in the latter primordia approximated that foundin the apical meristem of primary roots following the establishmentof the stationary phase under conditions of carbohydrate starvation. It has also been demonstrated in the course of these investigationsthat lateral root primordium development in all four speciesis at least biphasic and possibly triphasic. Vicia faba L., broad bean, Pisum sativum L., garden pea, Zea mays L., maize, Phaseolus vulgaris L., dwarf bean, root primordia, anlage, cell doubling time, lateral root emergence     

Water Use Characteristics of Dactylis glomerata L., Lolium perenne L. and L. multiflorum Lam. Plants

Cocksfoot (Dactylis glomerata L.). perennial ryegrass (Loliumperenne L.) and Italian ryegrass (L. multiflorum Lam.) plantswere grown on deep (75–95 cm) columns of soil in glasshousesand growth rooms with and without irrigation. The species inwhich growth declined least rapidly after water had been withheldwere those which transpired most slowly. During early establishmentin the glasshouse cocksfoot transpired least because of slowroot growth. In the growth room, when root systems were deeperand denser, perennial ryegrass transpired least because of lowleaf water conductance. Results are discussed in relation to(a) drought resistance in the three species; (b) breeding forincreased drought resistance through modifying root distributionand leaf water conductance; and (c) the use of isolated soilcolumns in water relations studies. Dactylis glomerata L., Lolium perenne L., Lolium multiflorum Lam., cocksfoot, perennial ryegrass, Italian ryegrass, transpiration, roots, leaf water conductance     

Root Hydraulic Conductivity of Two Cactus Species in Relation to Root Age, Temperature, and Soil Water Status

The effects of root age, temperature, and soil water statuson root hydraulic conductivity (L_P) were investigated for twocactus species, Ferocactus acanthodes and Opuntia ficus-indica.The volumetric flux density of water was measured for excisedroot segments, either using negative hydrostatic pressures appliedto the proximal end or using reverse flow of water from theroot to the soil. For both species, L_P at 20 ?C increased withroot age, average values reaching a maximum of 3.9 ? 10^–7m s^–1 MPa^–1 for F. acanthodes and 5.2 ? 10^–7m s^–1 MPa^–1 for O.ficus-indica at 11 to 17 weeksof age; L_P subsequently declined with increasing root age forboth species. L_P was maximal at a temperature of about 10 ?Cfor the youngest roots (1–3 weeks), this optimum shiftingto 40 ?C for 8-week-old roots of both species. For older roots(up to 1.5-years-old), L_P increased with temperature from 0?C to 50 ?C, with a Q₁₀ of 1.3 between 20 ?C and 30 ?C. At asoil water potential (_soil) of –0.016 MPa, root L_P wasindependent of the direction of water flow for both species.Depending on root age, L_P declined 45- to 500-fold for F. acanthodesand 90- to 800-fold for O.ficus-indica as _soil was reduced from–0.016 to –1.06 MPa, consistent with a rectifier-likebehaviour with respect to water movement between soil and roots.Incorporation of such responses into water uptake models shouldlead to a better understanding of root function. Key words: Ferocactus acanthodes, Opuntia ficus-indica, water potential, tension, reverse flow     

Further Observations on Root Contraction

Further observations, by light and electron microscopy, on theanatomy of root contraction in Hyacinthus orientalis cvs. arereported, together with some comparisons with Narcissus andGladiolus. It is maintained that root contraction in these andsome other species is essentially a growth process, as previousinvestigators have shown, and that an understanding of the re-directedgrowth of the cortical cells which brings it about may be basedon the specialized structural features of their cell walls,here described. Physical, anatomical and comparative reasonsare given for our belief that the alternative explanation ofthe contractile process in Gladiolus which relates it to cellcollapse resulting from transpirational ‘pull’ isuntenable. anatomy, contraction, Hyacinthus, Narcissus, Gladiolus, root     

Genotypic, Developmental and Drought-Induced Differences in Root Hydraulic Conductance of Contrasting Sugarcane Cultivars

Hydraulic properties of entire root systems and isolated rootsof three contrasting sugarcane clones were evaluated using transpiration-induceddifferences in hydrostatic pressure across intact root systems,root pressure-generated xylem sap exudation, and pressure-fluxrelationships. Regardless of the measurement technique employed,the clones were ranked in the same order on the basis of theirleaf area–specific total root system hydraulic conductance(C_root). All methods employed detected large developmental changesin G_rootroot with maximum values occurring in plants with approximately02 m₂ total leaf area. Genotypic ranking according to G_root,was reflected as a similar ranking according to root length-specifichydraulic conductance (L) of individual excised roots. Genotypicdifferences in G_root and L were consistent with anatomical characteristicsobserved in individual roots. Patterns of G_root, during soildrying and following re-irrigation suggested that the declinein G_root, observed during soil drying occurred within the rootsrather than at the soil–root interface and may have beencaused in part by xylem cavitation in the roots. Key words: Root hydraulic conductance, Saccharum spp, transpiration, root pressure, pressure-flux     

Influences of Water Status, Temperature, and Root Age on Daily Patterns of Root Respiration for Two Cactus Species

Daily patterns of root respiration measured as CO₂, efflux werestudied at various soil water potentials, temperatures, androot ages for individual, attached roots of the barrel cactusFerocactus acanthodes and the platyopuntia Opuntia ficus-indica.The daily patterns of root respiration for both establishedroots and rain roots followed the daily patterns of root temperature.Root respiration increased when root temperature was raisedfrom 5 °C to 50 °C for F. acanthodes and from 5 °Cto 55 °C for O. ficus-indica; at 60 °C root respirationdecreased 50° from the maximum for F. acanthodes and decreased25° for O. ficus-indica. Root respiration per unit d. wtdecreased with root age for both species, especially for rainroots. Root respiration rates for rain roots were reduced tozero at a soil water potential (     

Effects of soil mechanical impedance on root and shoot growth of Lolium perenne L., Agrostis capillaris and Trifolium repens L.

A method was used for applying a uniform mechanical impedanceto plant roots using sand packed at different bulk densitieswith depth within each growth cylinder. In a growth experiment,replicate cylinders were packed with sand to give the followingmechanical impedances: 0.25 MPa penetration resistance (negligibleimpedance), 1.40 MPa (moderate impedance) and 2.30 MPa (severeimpedance). Seedlings of Lolium perenne L., Trifolium repensL. and Agrostis capillaris were grown for 23 d in each impedancetreatment and effects on both roots and shoots were studied.Severe mechanical impedance affected both root and shoot growthrates for all three species resulting in smaller leaves andshorter roots. For the grasses, the root-to-shoot ratio at harvestwas the same for all the treatments, but a delay in the initiationof both shoots and roots was observed in the severe mechanicalimpedance treatment. The results are discussed in relation tothe possibility that roots penetrating the impeding treatmentsmay have caused signalling that kept shoot and root growth insynchrony. Differences observed in the response to mechanicalimpedance of T. repens compared to the other two species maybe a function of differences in the physiology between mono-and dicotyledonous species. Key words: Mechanical impedance, Lolium perenne, Trifolium repens, roots, shoots     

Agrobacterium rhizogenes-transformed roots of coffee (Coffea arabica): conditions for long-term proliferation, and morphological and molecular characterization

Background and Aims: The aims of this study were to set up proliferation conditionsfor hairy roots of Coffea arabica regenerated after transformationby Agrobacterium rhizogenes strain A4-RS, and to carry out themorphological and molecular characterization of hairy root clonesmaintained over the long term. Methods: Auxin supply, light conditions and sucrose concentration weremodified with the aim of establishing efficient root proliferationconditions. The morphological variability among 62 establishedhairy root clones was phenotyped by scanning the roots and analysingthe images using ‘whinRHIZO’ software procedures.PCR analysis of integration in transformed root cells of roland aux oncogenes from the T-DNA of the Ri plasmid was usedto study the molecular variability among clones. Key Results: Auxin supply was necessary to obtain and stimulate growth andbranching, and IBA applied at 0·5 µM was the mostefficient auxin. Significant differences were shown among the62 clones for total root length and for the percentage of fineroots. These variables were stable across subcultures and couldhence be used for efficient characterization of hairy root clones.The majority of hairy root clones (86 %) exhibited non-significantphenotype differences with non-transformed roots. Eight cloneswere significantly different from the non-transformed controlsin that they possessed a low proportion of fine roots. Two otherhairy root clones grew significantly faster than the other clones.The PCR analysis revealed a low variability in the integrationof rol and aux oncogenes in transformed root cells. The T_R-DNAwas never integrated as aux1 and aux2 genes were not found,although rolB and rolC genes from the T_L-DNA were always present. Conclusions: The discovery of low morphological variability among coffeehairy roots together with the identification of morphologicalvariables allowing easy identification of phenotypically alteredclones represent two important results. They make hairy rootsa possible, and efficient, tool for functional-genomic studiesof coffee root genes.     

Some Effects of Root Anatomy on K, Na and Cl Loading of Citrus Roots and Leaves

Loading of K, Na and Cl into fibrous roots of salt-treated citrusgenotypes, Rangpur lime (Citrus reticulata var. austera hybrid?)and Etrog citron (C. medica L.) was investigated in relationto root anatomy, in particular, the differentiation of the epidermal-hypodermallayers with distance from the root tip. The influence of durationof salinity treatment on the characteristics of K, Na and Claccumulation in leaves of the two genotypes was explored intwo experiments respectively, covering the short term (14 d)and long term (12 weeks). This study focused on two regions of the fibrous root, a segment2–12 mm from the root tip, immediately basipetal to thezone of elongation and a differentiated region of the maturesuberized, fibrous root, 40–50 mm from the root tip. Inthe distal root segment (2–12 mm) the epidermis and hypodermisof both genotypes was observed as two closely packed, uniseriatelayers of living cells. In the proximal root segment (40–50mm) the differentiated hypodermis was evident as a uniseriatelayer of thick-walled lumina interspersed with ‘passagecells’ which were frequently associated with clustersof viable epidermal cells. The characteristics of Na and Cl loading in the two root zonesdiffered profoundly during the short term loading (acclimation)phase. Attainment of quasi-steady-states for Na and Cl in thedistal region (with the exception of Na in Etrog citron) wasrapid as was Na equilibration of the proximal root segmentsin both genotypes. In contrast, Cl loading in the proximal regiontook c. 14 d to reach a quasi-steady-state by which time Cllevels were 2 to 3 times higher in the proximal than in thedistal root segments. The superior tolerance of Rangpur lime to long term salinitywas highly correlated to Cl exclusion from the leaves. However,during the first 14 d of acclimation to 50 mol m^–3 NaClthere was no segregation of the two genotypes based upon leafCl levels. Expression of differential accumulation of Cl inleaves appeared to be a time dependent process and was manifestonly after Cl saturation of the proximal root which representsthe bulk of the fibrous root system. The salt tolerance of Rangpurwas also associated with high selectivity of fibrous roots forK. over Na. A pronounced loss of K from cortical cells in theproximal root segment of salt-stressed Etrog citron was alsoevident by X-ray microanalysis. Key words: Citrus, anatomy, salinity, roots, X-ray microanalysis     

Relative Nitrogen Limitation at Steady-state Nutrition as a Determinant of Plasticity in Five Grassland Plant Species

Partitioning of biomass between roots and different shoot partshas often been used to explain the response of plants to variationsin resource availability. There are still many uncertaintiesin the importance of this trait for plant performance, and clearguidelines on how partitioning should be quantified in relationto growth rate and resource supply are of fundamental importancefor such an understanding. This paper reports an attempt toshow how plant nitrogen status relates to root:shoot partitioningand other plastic responses, in a manner that can be used forquantitative predictions. The reactions to nitrogen limitationof five grassland plant species, with different ecological demands,were compared. The species used were the forbs Polygala vulgarisand Crepis praemorsa, and the grasses Danthonia decumbens, Agrostiscapillaris and Dactylis glomerata. The experiment was conductedin a climate chamber where the plants were grown hydroponically(1) under non-limiting nutrient conditions and (2) at a steady-statenitrogen limitation, which enabled the plants to express halfof their growth potential. The relative growth rate (RGR) ofthe species was strongly related to plant nitrogen concentration(PNC) and leaf area ratio (LAR), whereas the effects on netassimilation rate (NAR) were very small. Despite large differencesin maximum relative growth rate, the species showed remarkablesimilarities in dry matter partitioning between root and shoot.It is concluded that root:shoot partitioning can be treatedas a direct function of the relative resource limitation ofthe plant. The difficulty of attaining well-defined levels ofresource limitation in soil, other solid substrates and manyhydroponic systems may be the most important reason for thedivergent results in earlier studies. Better knowledge of soil-rootinteractions, and plant responses to the whole span of resource-supplylevels, is required for a thorough understanding of how nutrientslimit growth. Copyright 1999 Annals of Botany Company Growth rate, plant strategies, plasticity, partitioning, biomass, nitrogen, nutrient limitation, grassland.     

Rooting of Chrysanthemum Stem Cuttings as Affected by (2-chloroethyl) Phosphonic Acid and Indolebutyric Acid

Stem cuttings of Chrysanthemum morifolium Ram. were treatedwith aqueous solutions of (2-chloroethyl)phosphonic acid (Ethrel)and indolebutyric acid (IBA). Ethrel (1 mg per 1) as a dip oras two foliar sprays, promoted root length and branching inMrs. Roy and Clipper which are difficult-to-root cultivars,but had no effect on Improved Mefo, an easy-to-root cultivar.IBA increased root number in both Clipper and Improved Mefo.The results suggest that IBA and Ethrel act at different stagesof the rooting process, with IBA promoting initiation and Ethrelstimulating elongation and branching. Increases in root numberwith IBA treatment, and in root length with Ethrel treatment,were accompanied by decreases in the soluble carbohydrate concentration,particularly in stem bases.     

Physiological activity of a viridicatin derivative, 3-(4-phenylcarbostyriloxy) acetic acid

A carboxymethylene derivative (V-OCH₂COOH) of viridicatin (V-OH)promoted the root growth of rice and sesame seedlings. V-OCH₂COOHhad no known hormonal activities, per se, but did have an inhibitoryeffect on IAA and 2,4-D-induced growth of Avena coleoptile sectionsand of carrot root callus. However, inhibition by VOCH2COOHof 2,4-D-induced growth in carrot root callus was to some extentreversed by increasing the concentration of 2,4-D. V-OCH₂C0OHseemed to competitively inhibit IAA-induced elongation of Avenacoleoptile sections. (Received September 14, 1970; )     

Observations on Gas Movement in the Rhizome of Menyanthes trifoliata L., with Comments on the Role of the Endodermis

Patterns of diffusion of oxygen in the rhizome of the aquaticMenyanthes have been investigated after the interruption ofeither stelar or cortical diffusion path-ways. Forty-eight hoursafter ringing, oxygen levels in cortex, stele, and root weresignificantly depressed, although never to danger point. Interruptionof the stele, involving also partial interruption of the cortex,was only significantly effective when made just above the samplingzone. The addition of M/1000 KCN to depress the metabolic uptakeof oxygen, resulted as expected in higher equilibrium levelsof oxygen in all zones. It was shown (a) that the velocity of diffusion of oxygen acrossthe endodermis essentially conformed to that of a process ofaqucous diffusion and (b) that oxygen diffused through the corticalair-space system at about 1/25 of its diffusion velocity inair. The diminished diffusion rate in the cortex is doubtlessdue to the frictional resistance imposed by the small poreswhich connect adjacent air cavities. An analysis has been made of the pertinent anatomical featuresof this rhizome, and the findings as a whole are discussed inrelation to their functional and ecological significance.     

Studies on the Physiology of Nodule Formation: IX. The Influence of Combined Nitrogen, Glucose, Light Intensity and Day Length on Root-hair Infection in Clover

Small amounts of nitrate or nitrite salts (10 µg N/plant)in the root medium of Trifolium glomeratum or T. repens delayednodulation, prolonged the initial rapid phase of root infectionand slightly stimulated lateral root formation, whereas equivalentquantities of ammonium sulphate or urea did not. Growth of rootsand root hairs was unaffected by any of these substances at10 µg N/plant. Altering the carbohydrate status of the clover seedlings byadding glucose to the root medium, or by changing day lengthor light intensity, influenced neither the stimulation of root-hairinfection nor the delay in nodulation induced by nitrate at10 fig N/plant, except that plants grown in total darkness hadfewer hairs infected when the root medium contained small amountsof nitrate. The nitrogenous compounds at 100 µg to 1,000 µg N/plant generally delayed and decreased nodulation,increased lateral root formation, slowed hair infection, andincreased root growth.     

Development of Lateral Root Primordia in Vicia faba, Pisum sativum, Zea mays andPhaseolus vulgaris: Rates of Primordium Formation and Cell Doubling Times

Lateral root primordium development has been examined in primaryroots of Vicia faba L., Pisum sativum L., Zea mays L. and Phaseolusvulgaris L. Following their initiation from an estimated minimumnumber of 77–162, 20–57, 17 and 12 cells respectivelyin Vicia, Phaseolus, Pisum and Zea, the primordia rapidly increasedin cell number to emerge as secondary roots about 2.8–3.6days later depending on the species being examined. Cell doublingtimes were estimated directly from cell numbers at differenttimes following primordium inception and were found to increasewith increase in primordium size in each of the species investigated. The number of primordia formed per cm of root growth per daywas greatest in Zea and least in Pisum. A comparison of thedata obtained for Vicia with that in the literature led to theconclusion that although the number of primordia produced percm of root growth was independent of the rate of primary elongation,the number produced per day increased in a linear fashion withincrease in the rate at which the primary lengthened. Vicia faba L, Pisum sativum L, Zea mays L, Phaseolus vulgaris L, broad bean, garden pea, maize, dwarf bean, root primordia, cell division, cell doubling time     

Waterlogging Tolerance Among a Diverse Range of Trifolium Accessions is Related to Root Porosity, Lateral Root Formation and 'Aerotropic Rooting'

Waterlogging tolerance, root porosity and root anatomy wereevaluated for 20 Trifolium accessions (species and sub-species,all annuals) selected from the eight Sections of the genus.Nine accessions were sensitive [relative growth rate (RGR) reducedby up to 80%] to waterlogging, nine accessions were tolerant(RGR not reduced), and in two accessions RGR increased (up to1.9-fold), when compared to drained controls. Growth of themain (i.e. tap) root axis was severely reduced in all accessionswhen waterlogged. Lateral roots formed the bulk of the rootsystem of tolerant accessions when grown in waterlogged soil.Lengths of the longest lateral roots were up to three-timeslonger than the main root axis. Root porosity varied from 0.7–12%among accessions when grown in aerated solution and from 1.1–15.5%in plants grown in hypoxic (0.031–0.045 mol O₂m^-3) solution.In some accessions aerenchyma formed by cell lysigeny; in othersit formed by schizogenous cell separation, or a combinationof both processes. O₂consumption rates of expanded lateral roottissues varied by up to 1.7-fold (on a mass basis) among thesix accessions tested and was reduced by an average of 24% forroots of plants grown in hypoxic solution prior to measurements.Accessions with the highest root porosity tended to have longerroots when grown in waterlogged soil. Three accessions formed‘aerotropic roots’ and the lateral root lengthsof these plants exceeded those of all other accessions, suggestingenhanced O₂movement to the submerged lateral root axis via theaerotropic roots. Waterlogging-tolerant accessions were identifiedin seven of the eight Sections in Trifolium, and the tolerantaccessions tended to be those with extensive lateral root systemsof relatively high porosity. Copyright 2001 Annals of BotanyCompany Waterlogging, Trifolium, aerenchyma, hypoxia, flooding, root respiration, clover, root anatomy, root porosity, pasture, aerotropic roots     

Responses of Photosynthesis and Biomass Allocation of an Understorey Herb, Pteridophyllum racemosum, to Gradual Increases in Irradiance

In wave-regenerating Abies forests in central Japan, light availabilityon the forest floor of a mature-tree stand increases graduallyover 4 to 5 years during the senescence of trees. The understoreyevergreen perennialPteridophyllum racemosum Sieb. et Zucc. (Papaveraceae)is commonly found in such forests. To determine the acclimationcharacteristics of this species to gradual changes in lightavailability, leaf photosynthetic traits and biomass allocationpatterns were determined along a transect running from fullyshaded understorey to a canopy gap. Along the transect, thephoton flux density on the forest floor relative to full sun(RPFD) varied from 2.3–36.7%. The light-saturated netphotosynthetic rate of field-grown plants increased as the lightenvironment increased from 2.3–14.1% RPFD. However, aslight conditions increased from moderate (14.1%) to high (36.7%),the light-saturated net photosynthetic rate decreased to a levelcomparable to that exhibited by low-light grown plants. On theother hand, root mass per unit leaf area (RMA) increased withincreasing light conditions. A higher RMA contributes to a higherwater uptake capacity per unit leaf area which in turn supportshigher rates of photosynthesis and transpiration in high light.We conclude that in wave-regenerating forests P. racemosum cansurvive in high-light environments by avoiding a severe waterdeficit and heat load by increasing RMA. Copyright 2001 Annalsof Botany Company Biomass allocation, photosynthesis, Pteridophyllum racemosum, root mass per unit leaf area, wave regeneration     

Growth, Resource Allocation and Haustorial Biology of the Root Hemiparasite Olax phyllanthi (Olacaceae)

Olax phyllanthi was found to parasitize a wide range of taxain the native habitat in coastal heath, South-West Australia.All major life and growth forms were regularly exploited, includingmost woody dicotyledons (except members of the Myrtaceae), afew monocotyledons and cohabiting root hemiparasites. Initiationof haustoria occurred mostly in autumn (southern hemisphere),with some senescing the following summer, and others survivinguntil replaced by a new generation of haustoria the followingautumn. Seedlings increased in dry matter and contents of N,P, K, Mg and Ca during preparasitic development, but did notsurvive beyond 6 months if failing to establish haustoria ona suitable host. Plant dry matter, mineral content and haustorialnumber increased exponentially during subsequent parasitic development.Mean shoot:root d. wt ratios of 1st to 3rd-year plants lay withinthe range 1.2–1.4. Root systems were laterally extensiveand restricted to the top 40 cm of rooting substrate. Mean totalroot lengths of 2nd- and 3rd-year plants were 7.1m (n = 5) and60.9 m (n = 5), respectively. Haustoria comprised 0.7–3.5%of plant d. wt, with a mean of 7.9 haustoria (n = 10, 2nd- and3rd-year plants) per metre of root length. Comparisons of mineralconcentrations in dry matter of O. phyllanthi and of a rangeof commonly parasitized hosts showed the parasite to be muchricher on average than its hosts in K, P, and to a lesser extentin N, but not noticeably different in Mg and Ca. Olax, root hemiparasite, mineral nutrition, haustoria, resource allocation