Is Attention Based on Spatial Contextual Memory Preferentially Guided by Low Spatial Frequency Signals?

A popular model of visual perception states that coarse information (carried by low spatial frequencies) along the dorsal stream is rapidly transmitted to prefrontal and medial temporal areas, activating contextual information from memory, which can in turn constrain detailed input carried by high spatial frequencies arriving at a slower rate along the ventral visual stream, thus facilitating the processing of ambiguous visual stimuli. We were interested in testing whether this model contributes to memory-guided orienting of attention. In particular, we asked whether global, low-spatial frequency (LSF) inputs play a dominant role in triggering contextual memories in order to facilitate the processing of the upcoming target stimulus. We explored this question over four experiments. The first experiment replicated the LSF advantage reported in perceptual discrimination tasks by showing that participants were faster and more accurate at matching a low spatial frequency version of a scene, compared to a high spatial frequency version, to its original counterpart in a forced-choice task. The subsequent three experiments tested the relative contributions of low versus high spatial frequencies during memory-guided covert spatial attention orienting tasks. Replicating the effects of memory-guided attention, pre-exposure to scenes associated with specific spatial memories for target locations (memory cues) led to higher perceptual discrimination and faster response times to identify targets embedded in the scenes. However, either high or low spatial frequency cues were equally effective; LSF signals did not selectively or preferentially contribute to the memory-driven attention benefits to performance. Our results challenge a generalized model that LSFs activate contextual memories, which in turn bias attention and facilitate perception.     

Does Spatial Locative Comprehension Predict Landmark-Based Navigation?

In the present study we investigated the role of spatial locative comprehension in learning and retrieving pathways when landmarks were available and when they were absent in a sample of typically developing 6- to 11-year-old children. Our results show that the more proficient children are in understanding spatial locatives the more they are able to learn pathways, retrieve them after a delay and represent them on a map when landmarks are present in the environment. These findings suggest that spatial language is crucial when individuals rely on sequences of landmarks to drive their navigation towards a given goal but that it is not involved when navigational representations based on the geometrical shape of the environment or the coding of body movements are sufficient for memorizing and recalling short pathways.     

Spatial organization of Dps and DNA–Dps complexes

DNA co-crystallization with Dps family proteins is a fundamental mechanism, which preserves DNA in bacteria from harsh conditions. Though many aspects of this phenomenon are well characterized, the spatial organization of DNA in DNA–Dps co-crystals is not completely understood, and existing models need further clarification. To advance in this problem we have utilized atomic force microscopy (AFM) as the main structural tool, and small-angle X-scattering (SAXS) to characterize Dps as a key component of the DNA-protein complex. SAXS analysis in the presence of EDTA indicates a significantly larger radius of gyration for Dps than would be expected for the core of the dodecamer, consistent with the N-terminal regions extending out into solution and being accessible for interaction with DNA. In AFM experiments, both Dps protein molecules and DNA–Dps complexes adsorbed on mica or highly oriented pyrolytic graphite (HOPG) surfaces form densely packed hexagonal structures with a characteristic size of about 9 nm. To shed light on the peculiarities of DNA interaction with Dps molecules, we have characterized individual DNA–Dps complexes. Contour length evaluation has confirmed the non-specific character of Dps binding with DNA and revealed that DNA does not wrap Dps molecules in DNA–Dps complexes. Angle analysis has demonstrated that in DNA–Dps complexes a Dps molecule contacts with a DNA segment of ~6 nm in length. Consideration of DNA condensation upon complex formation with small Dps quasi-crystals indicates that DNA may be arranged along the rows of ordered protein molecules on a Dps sheet.     

Spatial capture–recapture models allowing Markovian transience or dispersal

Spatial capture–recapture (SCR) models are a relatively recent development in quantitative ecology, and they are becoming widely used to model density in studies of animal populations using camera traps, DNA sampling and other methods which produce spatially explicit individual encounter information. One of the core assumptions of SCR models is that individuals possess home ranges that are spatially stationary during the sampling period. For many species, this assumption is unlikely to be met and, even for species that are typically territorial, individuals may disperse or exhibit transience at some life stages. In this paper we first conduct a simulation study to evaluate the robustness of estimators of density under ordinary SCR models when dispersal or transience is present in the population. Then, using both simulated and real data, we demonstrate that such models can easily be described in the BUGS language providing a practical framework for their analysis, which allows us to evaluate movement dynamics of species using capture–recapture data. We find that while estimators of density are extremely robust, even to pathological levels of movement (e.g., complete transience), the estimator of the spatial scale parameter of the encounter probability model is confounded with the dispersal/transience scale parameter. Thus, use of ordinary SCR models to make inferences about density is feasible, but interpretation of SCR model parameters in relation to movement should be avoided. Instead, when movement dynamics are of interest, such dynamics should be parameterized explicitly in the model.     

Spatial Models of Prebiotic Evolution: Soup Before Pizza?

The problem of information integration andresistance to the invasion of parasitic mutants in prebiotic replicator systemsis a notorious issue of research on the origin of life.Almost all theoretical studies published so far havedemonstrated that some kind of spatial structure is indispensable forthe persistence and/or the parasite resistance of any feasible replicator system.Based on a detailed critical survey of spatial models on prebiotic informationintegration, we suggest a possible scenario for replicator system evolution leadingto the emergence of the first protocells capable of independent life.We show that even the spatial versions of the hypercycle model are vulnerable toselfish parasites in heterogeneous habitats. Contrary, the metabolic system remainspersistent and coexistent with its parasites both on heterogeneous surfaces andin chaotically mixing flowing media. Persistent metabolic parasites can beconverted to metabolic cooperators, or they can gradually obtain replicase activity.Our simulations show that, once replicase activity emerged, a gradual and simultaneousevolutionary improvement of replicase functionality (speed and fidelity) andtemplate efficiency is possible only on a surface that constrains the mobility ofmacromolecule replicators. Based on the results of the models reviewed, we suggestthat open chaotic flows (`soup') and surface dynamics (`pizza') both played keyroles in the sequence of evolutionary events ultimately concluding in theappearance of the first living cell on Earth.     

Spatial–temporal patterns of methane dynamics in Lake Taihu

Many European lakes are monitored according to the EU Water Framework Directive (WFD), with focus on phytoplankton biomass and species composition. However, the low-frequency WFD monitoring may miss short-term phytoplankton changes. This is an important issue because short-term extreme meteorological events (heat waves and heavy rain) are predicted to increase in frequency and intensity with climate change. We used records from Lake Mondsee (Austria) from 2009 to 2015 to test if a reduction from monthly to seasonal sampling affected the average annual phytoplankton biovolume. Furthermore, we combined inverted light microscopy, FlowCAM and flow cytometry to estimate the effect of sampling during extreme events on average phytoplankton biovolume. Relative to monthly sampling, seasonal sampling significantly overestimated phytoplankton biomass. A heat wave in 2015 and two episodes of heavy rain in 2015 and 2016 caused species-specific changes; biovolumes of chlorophytes and the filamentous cyanobacterium Planktothrix rubescens (De Candolle ex Gomont) Anagnostidis & Komárek increased significantly during the heat wave. Using live material with FlowCAM and flow cytometry, we detected small and fragile cells and colonies that were either ignored or underrepresented by analysing fixed samples with light microscopy. We suggest a modified sampling and analysis strategy to capture short-term changes within the phytoplankton community.     

Spatial Patterns of Prisoner’s Dilemma Game in Metapopulations

Because to defect is the evolutionary stable strategy in the prisoner’s dilemma game (PDG), understanding the mechanism generating and maintaining cooperation in PDG, i.e. the paradox of cooperation, has intrinsic significance for understanding social altruism behaviors. Spatial structure serves as the key to this dilemma. Here, we build the model of spatial PDG under a metapopulation framework: the sub-populations of cooperators and defectors obey the rules in spatial PDG as well as the colonization–extinction process of metapopulations. Using the mean-field approximation and the pair approximation, we obtain the differential equations for the dynamics of occupancy and spatial correlation. Cellular automaton is also built to simulate the spatiotemporal dynamics of the spatial PDG in metapopulations. Join-count statistics are used to measure the spatial correlation as well as the spatial association of the metapopulation. Simulation results show that the distribution is self-organized and that it converges to a static boundary due to the boycotting of cooperators to defectors. Metapopulations can survive even when the colonization rate is lower than the extinction rate due to the compensation of cooperation rewards for extinction debt. With a change of parameters in the model, a metapopulation can consist of pure cooperators, pure defectors, or cooperator–defector coexistence. The necessary condition of cooperation evolution is the local colonization of a metapopulation. The spatial correlation between the cooperators tends to be weaker with the increase in the temptation to defect and the habitat connectivity; yet the spatial correlation between defectors becomes stronger. The relationship between spatial structure and the colonization rate is complicated, especially for cooperators. The metapopulation may undergo a temporary period of prosperity just before the extinction, even while the colonization rate is declining. An erratum to this article can be found at     

Spatial heterogeneity in whole lake sediments — towards a loading estimate

Studies of nutrient loadings, to shallow culturally eutrophied Alberta lakes, suggest internal inputs are significant. In this regard, estimation of bottom sediment P loads to Lake Wabamun (80 km², 5.5 m depth) were examined. Initially we determined the spatial variability in Total Organic Content (% loss on ignition) and Total Phosphorus, as indicators. Phosphorus fractions and biologically available phosphorus (BAP) were measured at specific stations. These data showed a very uniform distribution in sediment type with a Total Organic Content of 40.6 ± 3.3 (95% C.L.) at the west end, gradually declining to 26.3 ± 0.9 at the east end. Transects performed at routine monitoring stations indicate the representativeness of each station, e.g., station 2, 40.8 ± 1.3 (10 sites). One explanation of this uniformity is provided from²¹⁰Pb analysis of shallow cores which indicate mixing to a depth of 16 cm. This is also thought to explain the mechanics of P loading to the water phase. Finally, Total Organic Content relates well to BAP (r² = 0.80). It is hoped that this simple technique may well permit more precise extrapolation to whole lake BAP estimates at least on this lake.     

Spatial self-organisation in ecology: pretty patterns or robust reality?

Many seemingly plausible mathematical models of small-scale ecological interactions predict the self-organisation of dynamic, coherent and large scale spatial patterns (e.g. spirals). If true, such patterns would have important ecological and evolutionary consequences. For the most part, however, empirical studies have not corroborated their existence, suggesting erroneous dynamics in the models, shortcomings in empirical methodology, or both. Arguments for categorically dismissing self-organized patterns have been based on their assumed sensitivity to symmetry-breaking stochastic noise. However, many plausible mechanisms for generating patterns are robust to noise, and consequently broken symmetry is insufficient grounds for dismissing these self-organized patterns.     

Spatial Segregation of Ras Signaling—New Evidence from Fission Yeast

The Ras GTPases act as binary switches for signal transduction pathways that are important for growth regulation and tumorigenesis. Despite the biochemical simplicity of this switch, Ras proteins control multiple pathways, and the functions of the four mammalian Ras proteins are not overlapping. This raises an important question—how does a Ras protein selectively regulate a particular activity? One recently emerging model suggests that a single Ras protein can control different functions by acting in distinct cellular compartments. A critical test of this model is to identify pathways that are selectively controlled by Ras when it is localized to a particular compartment. A recent study has examined Ras signaling in the fission yeast Schizosaccharomyces pombe, which expresses only one Ras protein that controls two separate evolutionarily conserved pathways. This study demonstrates that whereas Ras localized to the plasma membrane selectively regulates a MAP kinase pathway to mediate mating pheromone signaling, Ras localized to the endomembrane activates a Cdc42 pathway to mediate cell polarity and protein trafficking. This study has provided unambiguous evidence for compartmentalized signaling of Ras.     

PKMζ Differentially Utilized between Sexes for Remote Long-Term Spatial Memory

It is well established that male rats have an advantage in acquiring place-learning strategies, allowing them to learn spatial tasks more readily than female rats. However many of these differences have been examined solely during acquisition or in 24h memory retention. Here, we investigated whether sex differences exist in remote long-term memory, lasting 30d after training, and whether there are differences in the expression pattern of molecular markers associated with long-term memory maintenance. Specifically, we analyzed the expression of protein kinase M zeta (PKMζ) and the α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor subunit GluA2. To adequately evaluate memory retention, we used a robust training protocol to attenuate sex differences in acquisition and found differential effects in memory retention 1d and 30d after training. Female cohorts tested for memory retention 1d after 60 training trials outperformed males by making significantly fewer reference memory errors at test. In contrast, male cohorts tested 30d after 60 training trials outperformed females of the same condition, making fewer reference memory errors and achieving significantly higher retention test scores. Furthermore, given 60 training trials, females tested 30d later showed significantly worse memory compared to females tested 1d later, while males tested 30d later did not differ from males tested 1d later. Together these data suggest that with robust training males do no retain spatial information as well as females do 24h post-training but maintain this spatial information for longer. Males also showed a significant increase in synaptic PKMζ expression and a positive correlation with retention test scores, while females did not. Interestingly, both sexes showed a positive correlation between retention test scores and synaptic GluA2 expression. Furthermore, the increased expression of synaptic PKMζ, associated with male memory but not with female memory, identifies another potential sex-mediated difference in memory processing.     

Spatial behaviour of the Apennine hare: Are females territorial?

The spatial behaviour of seven male and five female Apennine hares Lepus corsicanus was studied in a scrub-wood area of Central Italy, through radiotracking. The median percentage of home-range overlap was about five times lower between females (< 15%) than between males (75%). Intrasexual aggression was recorded for females, but never for males. No species within the Lepus genus are known to be territorial, whereas we suggest that inter-individual female intolerance in the Apennine hare may be compatible with territoriality. The Apennine hare is also unusual among hares because it reproduces throughout the year, that is also during food-poor months, which could have triggered resource defence between females to maximise their reproductive fitness.     

Spatial mosaic formation through frequency-dependent selection in Müllerian mimicry complexes

Although contemporary models of Müllerian mimicry have considered the movement of interfacial boundaries between two distinct mimetic forms, and even the possibility of polymorphisms in two patch systems, no model has considered how multiple forms of Müllerian mimics might evolve and be maintained over large geographical areas. A spatially explicit individual-based model for the evolution of Müllerian mimicry is presented, in which two unpalatable species are distributed over discrete cells within a regular lattice. Populations in each cell are capable of genetic drift and experience localized dispersal as well as frequency-dependent selection by predators. When each unpalatable prey species was introduced into a random cell and allowed to spread, then mimicry evolved throughout the system in the form of a spatial mosaic of phenotypes, separated by narrow "hybrid zones". The primary mechanism generating phenotypic diversity was the occasional establishment of new mutant forms in unoccupied cells and their subsequent maintenance (and spread) through frequency-dependent selection. The mean number of discrete clusters of the same morph that formed in the lattice was higher the higher the intensity of predation, and higher the lower the dispersal rate of unpalatable prey. Under certain conditions the hybrid zones moved, in a direction dependent on the curvature of their interfacial boundaries. However, the mimetic mosaics were highly stable when the intensity of predation was high and the rate of prey dispersal was low. Overall, this model highlights how a stable mosaic of different mimetic forms can evolve from a range of starting conditions through a combination of chance effects and localized frequency-dependent selection.     

AP-3 and Rabip4’ Coordinately Regulate Spatial Distribution of Lysosomes

The RUN and FYVE domain proteins rabip4 and rabip4’ are encoded by RUFY1 and differ in a 108 amino acid N-terminal extension in rabip4’. Their identical C terminus binds rab5 and rab4, but the function of rabip4s is incompletely understood. We here found that silencing RUFY1 gene products promoted outgrowth of plasma membrane protrusions, and polarized distribution and clustering of lysosomes at their tips. An interactor screen for proteins that function together with rabip4’ yielded the adaptor protein complex AP-3, of which the hinge region in the β3 subunit bound directly to the FYVE domain of rabip4’. Rabip4’ colocalized with AP-3 on a tubular subdomain of early endosomes and the extent of colocalization was increased by a dominant negative rab4 mutant. Knock-down of AP-3 had an ever more dramatic effect and caused accumulation of lysosomes in protrusions at the plasma membrane. The most peripheral lysosomes were localized beyond microtubules, within the cortical actin network. Our results uncover a novel function for AP-3 and rabip4’ in regulating lysosome positioning through an interorganellar pathway.     

Does Chronic Unpredictable Stress during Adolescence Affect Spatial Cognition in Adulthood?

Spatial abilities allow animals to retain and cognitively manipulate information about their spatial environment and are dependent upon neural structures that mature during adolescence. Exposure to stress in adolescence is thought to disrupt neural maturation, possibly compromising cognitive processes later in life. We examined whether exposure to chronic unpredictable stress in adolescence affects spatial ability in late adulthood. We evaluated spatial learning, reference and working memory, as well as long-term retention of visuospatial cues using a radial arm water maze. We found that stress in adolescence decreased the rate of improvement in spatial learning in adulthood. However, we found no overall performance impairments in adult reference memory, working memory, or retention caused by adolescent-stress. Together, these findings suggest that adolescent-stress may alter the strategy used to solve spatial challenges, resulting in performance that is more consistent but is not refined by incorporating available spatial information. Interestingly, we also found that adolescent-stressed rats showed a shorter latency to begin the water maze task when re-exposed to the maze after an overnight delay compared with control rats. This suggests that adolescent exposure to reoccurring stressors may prepare animals for subsequent reoccurring challenges. Overall, our results show that stress in adolescence does not affect all cognitive processes, but may affect cognition in a context-dependent manner.

Highlights

• -Rats were reared with or without chronic unpredictable stress in adolescence.
• -In adulthood, spatial cognitive abilities were tested in a radial arm water maze.
• -Prior-stressed rats began searching faster in the maze after an overnight delay.
• -Prior stress may facilitate faster action in challenging situations.
• -Prior stress did not affect learning, reference or working memory, or retention.

     

Spatial velocity distributions in pulse-wave propagation based on fluid–structure interaction

In this paper, spatial velocity distributions in pulse-wave propagation based on a fluid–structure interaction model are presented. The investigation is performed using the assumption of laminar flow and a linear-elastic wall. The fluid–structure interaction scheme is constructed using the finite element method. The results show that velocity distributions embody an obvious time delay in an elastic tube model. Further, the fully developed flow is delayed and the velocity values are increased in comparison with a rigid tube model. The increase in the wall thickness makes the time delay between the velocity peaks of different sites smaller while the time delay between the velocity minima is unchanged. Similarly, the time delay between the velocity bottoms is more easily found when decreasing the internal radius. The model gives valid results for spatial velocity distributions, which provide important information for wave propagation.     

Spatial mosaic and interfacial dynamics in a Müllerian mimicry system

Uncovering why spatial mosaics of mimetic morphs are maintained in a Müllerian mimicry system has been a challenging issue in evolutionary biology. In this article, we analyze the reaction diffusion system that describes two-species Müllerian mimicry in one- and two-dimensional habitats. Due to positive frequency-dependent selection, a local population first approaches the state where one of the comimicking patterns predominates, which is followed by slow movement of boundaries where different patterns meet. We then analyze the interfacial dynamics of the boundaries to find whether a stable cline is maintained and to obtain the wave speed if the cline is unstable. The results are: (1) In a spatially uniform habitat the morph with greater base fitness spreads both in one and two species system. (2) The strength of cross-species interaction determines whether the mimetic morph clines of model and mimic species coalesce into the same geographical region or pass through each other. The joint wave speed of clines decreases by increasing the number of comimicking species in the mimicry ring. (3) In spatial heterogeneous habitats, stable clines can be maintained due to the balance between the base fitness gradient and the biased gene flow by negative curvature of boundary. This allows the persistence of a spatial mosaic even if one of the morphs is in every place advantageous over the other. A balanced cline is also maintained if there is a gradient in the population density. (4) A new advantageous morph occurring at a local region is doomed to go to extinction in a finite time if the "radius" of initial distribution is below a threshold. Possible applications to the heliconiine butterfly mimicry ring, heterozygous disadvantage systems of chromosomal rearrangement and hybrid zone, the third phase of Wright's Shifting Balance theory, and cytoplasmic incompatibility are discussed.