A multi-lake comparison of epilithic diatom communities on natural and artificial substrates

In a multi-season, multi-lake study of epilithic diatom communities, glass slide artificial substrate samplers provided poor representation of communities on natural substrates. Percent similarities between the two communities averaged only 37 over the course of the study. Overall, natural substrates exhibited greater species richness than artificial samplers, particularly during the summer, although this difference was slight. Patterns of selection and inhibition by artificial substrates of individual diatom species varied by both season and lake. Members of the genus Cymbella, particularly C. microcephala, appeared to be the most consistently inhibited, while Achnanthes minutissima was often selected for. In spite of the great differences between the two substrate types, replicability of artificial substrates was very high, and could prove to be a more important quality in monitoring applications than accurate representation of the natural community.     

Seasonal changes in the epiphyte community of natural and artificial macrophytes in Lake Memphremagog (Que. & Vt.)

Seasonal changes in the epiphyte biomass, measured both as chlorophyll a and as cell volume, and species composition were compared on Potamogeton richardsonii and on a similar plastic plant grown together in a shallow bay of Lake Memphremagog (46°06'N, 72°16W). Both substrates exhibited two periods of high biomass during the June to September growing season; one in June, when the community was dominated by loosely attached species with a strong planktonic component (up to 37%), and one in September, when the epiphytes were characterized by species tightly attached to the leaves. Although this seasonal trend was similar, the loosely and tightly attached communities were best developed on the natural and artificial plants, respectively. The diversity of the epiphytes was significantly higher on the natural than on the artificial leaves from July on. Both the diversity differences and differences in community structure appear to be the result of the summer accumulation of CaCO₃ observed only on the upper leaf surfaces of the natural plants. Consequently, P. richardsonii appears to affect epiphyte development largely by its precipitation of CaCO₃, with no evidence for either direct inhibition or stimulation of the epiphytes by the natural plants. The reduced epiphyte biomass on growing tips was no different from that on artificial plants of the same age and exposure and is attributable to an insufficient time for colonization rather than to inhibition by the macrophyte.Contribution No. 8, Lake Memphremagog Project, Limnology Research Group     

Protozoan species accrual on artificial islands in differing lentic and wetland systems

In the recently broadened context of insular biogeographic theory, artificial substrates might well be considered as initially barren islands with the surrounding natural community acting as a source pool of potential colonists. In an attempt to relate protozoan communities forming on polyurethane foam (PF) substrates to their environments, a series of field experiments were performed in several aquatic and semi-aquatic (wetlands) systems in Michigan, Virginia, and Colorado. Results were considered in the context of island colonization theory.Given relatively stable environmental conditions and sufficient time to colonize, protozoa formed highly replicable communities on PF substrates; MacArthur & Wilson's equation for noninteractive island colonization, S = Seq ·(l-e^–Gt ), accuratelt described the process of species accrual in most cases. Sites were compared using non-linear regression estimates of the parameter, G, which reflects the rate at which substrates attained equilibrium species numbers. In general, the rate of equilibrium acquisition reflected differences in productivity and structure between the protozoan communities from the various habitats and systems studied.     

A COMPARISON OF THE ATTACHED ALGAL COMMUNITIES OF A NATURAL AND AN ARTIFICIAL SUBSTRATE1

A study of communities of attached algae in Lake Mize Florida, wax made during July 1969, July-August 1970 and April 1971. The substrates exposed during the study included glass slides mid the terrestrial form of the amphibious sedge, Eleocharis baldwinii (Torr.) Chapman. Counts were used to determine the relative abundance and densities of the species present on the 2 substrates under different environmental conditions. Such analyses indicated that at any given lime and place, a number of factors influenced the composition of the periphyton. Generally, lightly adhering, resupinate species attained higher densities on glass slides than filamentous and loosely associated metaphytonic species. The epiphytic flora of E. baldwinii contained a large number of both strong attachers and the metaphyton. The vertical range of many attached species was also greater on E. baldwinii than on glass slides.     

Effect of continuous nutrient enrichment on microalgae colonizing hard substrates

In order to understand the effect of changing nutrient conditions on benthic microalgae on hard substrates, in-situ experiments with artificial substrates were conducted in Kiel Fjord, Western Baltic Sea. As an extension of previous investigations, we used artificial substrates without silicate and thus were able to supply nutrient media with different Si:N ratios to porous substrates, from where they trickled out continuously. The biofilm developing on these substrates showed a significant increase in biovolume due to N + P enrichment, while Si alone had only minor effects. The stoichiometric composition of the biomass indicated nitrogen limitation during most of the year. The C:N ratios were lowered by the N + P addition. The algae were dominated by diatoms in most cases, but rhodophytes and chlorophytes also became important. The nutrient treatment affected the taxonomic composition mostly at the species level. The significance of the results with regard to coastal eutrophication is discussed.     

Aquatic pollution assessment based on attached diatom communities in the Pinang River Basin,Malaysia

The diatom communities collected from artificial substrates (glass slides) at 12 sampling sites along Pinang River Basin were analysed. Species composition was highly variable among sampling sites, and the highest diversity value (mean H = 3.56 bit/individual) and species richness (mean S = 17.32) was recorded at a polluted station in an estuary, which received salt-water intrusion during high tide. The downstream sampling stations were heavily organically polluted with Saprobic Index values ranging between 2.81 and 3.10, while upstream stations were relatively clean with Saprobic Index values recorded between 1.40 and 1.96. The diatom community structure and the specific sensitivity of certain diatom species can be related to the degree of water quality in Pinang River Basin. The abundance of certain diatom species could be used as biological indicators to measure impacts of river pollution.     

Effects of physical disturbance and canopy cover on attached diatom community structure in an Idaho stream

A field experiment was conducted to determine the effect of disturbance frequency on diatom communities established on artificial substrates within an open canopy site and a closed canopy site of a 3rd order stream. The open canopy site (OCS) had a total of 80 diatom taxa colonizing the substrates, while the closed canopy site (CCS) had only 55 taxa. Cluster analysis revealed that the two sites had distinct diatom communities, although the most common species were similar between sites. There was no effect of disturbance frequency on species diversity (H') at OCS, however species diversity significantly decreased as disturbance frequency increased at CCS. At OCS, Amphora perpusilla increased in abundance as disturbance frequency increased, while Navicula lanceolata abundance decreased as disturbance increased. At CCS, Cocconeis placentula v. euglypta remained dominant regardless of disturbance frequency. The results suggest that some diatom species may be shade adapted, which may explain the site-specific responses. In addition, diatom growth-forms may explain the within site taxon-specific responses to disturbance. For example, Achnanthes sp. and Cocconeis sp., small horizontal forms, were predominant on the high disturbance substrates. Vertical or large horizontal forms may be mechanically removed by frequent physical disturbance allowing such small horizontal forms to become abundant. Frequent disturbance, by maintaining the community in an early stage of development, directly influences the diatom assemblage on rocks in streams.     

Periphyton growth and diatom community structure in a cooling water pond

Periphyton (Aufwuchs) accumulation was measured on artificial substrates in a pond in central Finland which receives warm cooling-water effluent from a power plant. The growth of periphyton was generally more rapid on the substrates during the first two weeks of colonization near the inflow of the warm water effluent than in the middle of the pond. The maximum accumulation of periphyton was in spring and autumn (dry weight maximum at warm effluent was in spring 3.5 mg DW cm⁻²,2.65 mg AFDW cm⁻²; chlorophyll a maximum 3.96 μg cm⁻² was found in autumn at pond-middle station). During mid-winter months the growth was strongly limited by solar radiation, but the growth was also slow at both stations in the summer months, when the power plant was out of operation. The periphyton accumulation rate was fastest near the water surface and decreased rapidly with increasing depth. A total of 167 diatom species were found in periphyton samples. However, most species were rare; many of the dominants were common to both plankton and periphyton. Species similarity analyses (Jaccard's similarity) between 10 different diatom communities (including periphyton from 9 different types of substrates and phytoplankton) indicated low similarity index values although differences between communities were not significant.     

Enzyme kinetic and molecular modelling studies of sulphur-containing substrates of phenylalanine 4-monooxygenase

Previous investigations into the binding of substrates/cofactors to the PAH active site have only concentrated on Phe, thienylalanine and BH₄. This is the first reported investigation to model aliphatic thioether amino acid substrates to PAH. The clearance of the thioether substrates (4.82-79.09% of Phe) in the rat and human (1.19-37.41% of Phe) showed species differences. The xenobiotic thioether substrates (SMC and SCMC) were predicted to be poor substrates for PAH by the molecular modelling investigation and this has now been confirmed by the in vitro enzyme kinetic data. However, reaction phenotyping investigations have found that PAH was the major enzyme involved in the metabolism of SCMC in vitro and in vivo.     

The use of artificial spawning substrates as media to support the reproduction of Eurasian perch in Lake Piediluco

Lake Piediluco is a naturally regulated lake used for hydroelectric purposes. Management of the lake and the eutrophic conditions of its waters have had a negative impact on fish populations, particularly that of Eurasian perch (Perca fluviatilis L.). In order to increase the natural reproduction of this species, an experimental program was undertaken from 1997 to 2003 to facilitate reproduction by providing artificial spawning substrates. In Lake Piediluco perch spawn from March to May. Egg ribbons ranged in length from 30 to 180 cm and contained from 12,740 to 205,466 eggs. The fraction of degenerated eggs ranged from 0.20% to 63.30% (average 10.20%). The results demonstrate the effectiveness of artificial substrates as suitable substrates for the reproduction of perch. Guest editors: R. L. Welcomme & G. Marmulla Hydropower, Flood Control and Water Abstraction: Implications for Fish and Fisheries     

Distribution of Epilithic Diatoms in Response to Environmental Conditions in an Urban Tropical Stream, Central Kenya

Use of diatoms in monitoring water quality is well acknowledged in developed countries, but only recently has the assessment started gaining importance in developing countries. Diatoms can be obtained from natural and artificial substrates. Appreciating the differences and similarities of diatom assemblages on both substrates may contribute to a better understanding and standardization particularly during monitoring of water quality. During this study we assessed diatom assemblages, biodiversity and trophic indices in relation to water quality along the Nairobi River. Fifteen sites were sampled in September 2000 during the dry season. Diatoms were collected from natural substrates (stones, pebbles) and artificial substrates (100% acrylic wool). On artificial and natural substrates, a total of 190 and 151 taxa were found, respectively, the majority of these taxa (80%) have cosmopolitan distribution and are also widespread throughout tropical African. Species composition changed downstream, five taxa dominated upper and mid stream sites whereas lower stream sites were dominated by one or two taxa. Species richness, diversity, dominance and evenness were positively correlated with NO₃, O₂ and altitude but decreased markedly downstream with a simultaneous increase in total dissolved solids, alkalinity, chemical oxygen demand and PO₄. Ordination and classification (CANOCO and TWINSPAN) showed that diatom assemblages in the Nairobi River responded strongly to water quality changes with respect to concentrations of NO₃, NO₂, total dissolved solids and temperature. Taxa common at less impacted upstream sites included Gomphonema gracilis, Anomoeoneis brachysira and Fragilaria biceps; while common taxa at midstream sites with agricultural catchments were Gomphonema parvulum, Navicula cryptocephala, N. schroeteri, N. bryophila, N. halophila, Nitzschia linearis var. linearis and Cymbella silesica. Achnanthes minutissima var. saprophila, Gomphonema angustum, Navicula subminuscula, N. arvensis, Nitzschia palea and N. umbonata were most common at urban sites, which were polluted by residential and industrial effluents. Trophic diatom indices suggested that water quality was poor at most sites in the Nairobi River. Most sites along the river had low Generic Diatom Index values, GDI (<12) and high Trophic Diatom Index values, TDI 73–78 (median = 76) and 75–84 (median = 77) for artificial and natural substrates, respectively. This study showed that diatoms' response on natural and artificial substrates were similar and reflected environmental conditions correctly.     

Habitat preferences of red-listed fungi and bryophytes in woodland key habitats in southern Sweden – analyses of data from a national survey

The aim of this study was to identify habitat preferences of red-listedepiphytic and epixylic bryophyte, lichenized and non-lichenized fungi speciesinwoodland key habitats (WKHS) (areas less than 10 ha, where foreststructures indicate occurrence of red-listed species) in southern Sweden. Therelative importance of different groups of environmental factors was assessedwith partial canonical correspondence analysis techniques and across-validationapproach using data from 7196 selected WKHs. Different woody substrates (oldtrees, logs and snags) made up the most important variable group for occurrenceof red-listed species (30% unique explainable variation). Species associatedwith Fagus sylvatica and Picea abieshabitats, but also species associated with Quercus spp.andPopulus tremula habitats showed distinct habitatpreferences. The second most important variable group (16% unique explainablevariation) was geographical location. A west–east gradient was identified, andspecies concentrated to Baltic islands in the east were separated from otherspecies. This gradient, and an identified south–north gradient, probablyreflect differences in temperatures and rainfall between different regions.Among the remaining variable groups, historical land-use, ground conditions andforest stand composition were of similar importance (5–7% uniqueexplainable variation). Traditional management regimes resulting in semi-openforest habitats (leaf harvesting, forest grazing and selective cutting) wereassociated with the occurrence of many species, probably due to differences inmicroclimate between sites of different openness. Furthermore, a groundmoisturegradient extending from species associated with dry sites (mainly lichenizedfungi) to species associated with wet sites (mainly bryophytes), and a nutrientgradient from species associated with nutrient-poor sites to species occurringat nutrient-rich sites, were identified. Thus, conservation measures are neededin a broad spectrum of habitats with different substrates. Also sites withsimilar substrates, but situated in different regions (and climates), or withdifferent ground moisture and nutrient conditions are needed to cover the fullspectrum of habitat conditions suitable for different red-listed bryophytes andfungi.     

Structural and functional characteristics of epiphyton and epipelon in relation to their distribution in Lake Vechten

Epiphyton and epipelon were quantitatively collected, respectively, from the submerged macrophytes and the sandy lake bottom of Lake Vechten (The Netherlands). On a weight basis, epiphyton was maximal in autumn and epipelon in summer. In winter the chemical composition of epiphyton and epipelon was similar. In summer the epiphyton had on a unit weight basis more organic matter and carbonate, and had per unit organic matter a higher algal number, nitrogen and energy content than the epipelon. Algae predominating the epiphyton were filamentous greens and pennate diatoms; those in the epipelon were pennate diatoms and blue-green algae. In both cases, species known to frequent the phytoplankton were abundant. The diatoms were quantified using paper chromatographic pigment analyses. Both the epiphyton and the epipelon exhibited maximal photosynthesis in mid summer. That light was generally the limiting factor was evident from periphyton developed on artificial substrates. This periphyton differed widely in its composition from that on the natural substrates, mainly because the latter collected much more sedimenting matter.In dense Ceratophyllum stands light was severely attenuated and the significant gradients in oxygen and pH were caused by the differences with depth in the proportions of photosynthesis and respiration. The oxygen content and pH at the bottom decreased owing to epipelic respiration. The epiphytic composition depended greatly on the degree of light attenuation. The epiphytic and epipelic respiration, except during part of the early summer, exceeded photosynthesis on a 24 h basis; this included the macrophytic photosynthesis during the time the vegetation was maximally developed. During the growing season import of organic matter, i.e. deposited seston, greatly exceeded that due to the photosynthetic production. After the summer maximum, the epipelon decreased faster than predicted from its oxygen exchange. It was concluded that sedimentation and resuspension determined mainly the changes in epiphyton and epipelon. Especially when covered with vegetation, the lower littoral of Lake Vechten plays a large part in the aerobic decomposition of sestonic organic matter.     

Nuisance biomass levels of periphytic algae in streams

Relative coverage of filamentous periphytic algae increased with chlorophyll a (chl a) biomass on natural substrata in 22 northwestern United States and Swedish streams. A biomass range of 100–150 mg chl a m⁻² may represent a critical level for an aesthetic nuisance; below those levels, filamentous coverage was less than 20%. Other indices of water quality (dissolved oxygen content and measures of benthic macroinvertebrate diversity) were apparently unaffected by periphytic biomass or filamentous coverage in these streams. Neither was biomass related to limiting nutrient content (soluble reactive phosphorus, SRP), as has been observed in previous experiments using bare rocks in streams and slides in artificial channels. Ambient SRP concentration may not be a useful predicter of periphyton accrual on natural substrates, due to uptake and recycling of P throughout the stream and undetermined losses such as sloughing and grazing.     

Egg predation in forest bird communities on islands and mainland

Summary To examine if differences in egg predation rates could explain differences in bird community composition, egg predation was studied in two years on small islands in a South Swedish lake and on the nearby mainland using both natural and artificial nests.In plots with similar vegetation, the combined density of ground- and tree-nesting bird species did not differ between the islands and the mainland. Egg predation rates were similar on islands and the mainland for natural Turdus nests in two years, and for artificial Turdus and Phylloscopus nests. Unmarked and unvisited experimental nests suffered similar rate of egg predation as marked and visited nests. Egg predation rates were higher on natural nests when artificial nests were also put out, increasing the total nest density. Initial egg predation rates in artificial nests were also higher than later when nest density had decreased by 75%.The egg predators involved differed for artificial Phylloscopus nests between the islands and the mainland. Small mammals were apparently responsible for 29% of the predation on the mainland, but none on the islands. Artificial Turdus nests near crow nests suffered from a higher egg predation rate than nests further away from crow nests. Daily survival rates of Turdus nests increased from the laying to the incubation and further to the fledging state.Egg predation can not explain differences in bird community composition between islands and mainland in the present case.     

Colonization patterns of wood-inhabiting fungi on baits in Hong Kong rivers, with reference to the effects of organic pollution

The diversity of wood-inhabiting fungi was investigated by submerging woody baits at upstream and downstream sites of the Lam Tsuen and Tai Po Rivers in Hong Kong. The diversity of fungi in the Lam Tsuen River was also compared with that on natural woody substrates found in a previous study. There were differences in the species composition between the upstream and downstream sites, possibly reflecting natural variations along the river. The Tai Po River downstream was organically polluted, which appeared to have little effect on species diversity since more species were recorded. Organic pollution may, however, cause a shift in species composition. The fungal communities on baits and natural substrates in the Lam Tsuen River were similar, although a lower diversity was observed on baits. This may be related to the period of submergence and the fact that a single wood type was used. Cercophora spp. occurred frequently downstream in the Tai Po River, while the common species in the Lam Tsuen River were Aquaticola rhomboidea and Pseudoproboscispora aquatica. Further interpretation on the effects of organic pollution was limited because of single collection data but appropriate experimental designs – putting baits in unimpacted sites for assessing human impacts in streams – are suggested.     

Do artificial substrates favor nonindigenous fouling species over native species?

Exotic species are prominent constituents of fouling communities. If exotic fouling organisms colonize or compete better on a wider range of substrate types than native species, this may partially account for their high abundance in estuaries and bays. We used four artificial and four naturally occurring substrate types to compare initial settlement and percent cover of native and exotic fouling species through six months of community development. Both the identity of common taxa and the total number of species colonizing artificial versus natural substrate types were similar. Despite the similarities in species richness, relative abundance patterns between natural and artificial substrate types varied, particularly as the communities developed. Native species were initially in equal abundance on natural and artificial substrate types. Initially, the two most common exotic species, the colonial tunicates, Botrylloides violaceus Ritter and Forsyth and Botryllus schlosseri (Pallas), were also in similar, but low, abundance on artificial and natural substrates. As the communities developed, there was little change in abundance of exotic or native species on natural substrates. However, on artificial substrates the exotic tunicates increased dramatically and native species declined in abundance. Artificial surfaces may provide a novel context for competitive interactions giving exotic species a more “level playing field” in an environment for which they otherwise might not be as well adapted compared to long-resident native species. Additions of artificial substrates to nearshore environments may disproportionately favor exotic species by increasing local sources of exotic propagules to colonize all types of substrates.     

Mycoflora,and mycotoxins production in Nigerian corn and corn-based snacks

Thirty-one fungal species, mostly toxigenic and belonging to 11 genera were isolated from corn, corn cake and corn roll snack samples.Aspergillus, Penicillum andFusarium accounted for 10, 6 and 3 of the species and altogether, they constituted 90, 94 and 88 percent of the total fungi in corn, corn cake and corn roll snack respectively. Mycotoxins (aflatoxins and ochratoxin A) were detected in 45, 80 and 12 percent while the means and ranges of the total aflatoxins recorded were: 200(25–770 ppb); 233(15–1070 ppb) and 55(10–160 ppb) for corn, corn cake and corn roll snack samples respectively. Ochratoxin A was detected at toxicologically significant levels in only 15 percent of the corn cake samples analyzed. All the strains ofAspergillus flavus andA. ochraceus tested produced aflatoxin B and ochratoxin A, respectively, when they were cultured on each of the three substrates. In each case, substantial quantities of the toxins were produced from 25 to 35°C with the peak level recorded at 30°C. Toxin production was detected only in substrates with 15 percent moisture content and above; reaching the maximum at 25 or 30 percent moisture level. No substantial differences in the amount of toxins were elaborated with further increase in substrates' moisture content. Of the three substrates, corn cake was the most suitable for aflatoxin B production while they were all equally suitable for the elaboration of ochratoxin A.     

A H NMR study of the specificity of α-l-arabinofuranosidases on natural and unnatural substrates

Background

The detailed characterization of arabinoxylan-active enzymes, such as double-substituted xylan arabinofuranosidase activity, is still a challenging topic. Ad hoc chromogenic substrates are useful tools and can reveal subtle differences in enzymatic behavior. In this study, enzyme selectivity on natural substrates has been compared with enzyme selectivity towards aryl-glycosides. This has proven to be a suitable approach to understand how artificial substrates can be used to characterize arabinoxylan-active α-l-arabinofuranosidases (Abfs).

Methods

Real-time NMR using a range of artificial chromogenic, synthetic pseudo-natural and natural substrates was employed to determine the hydrolytic abilities and specificity of different Abfs.

Results

The way in which synthetic di-arabinofuranosylated substrates are hydrolyzed by Abfs mirrors the behavior of enzymes on natural arabinoxylo-oligosaccharide (AXOS). Family GH43 Abfs that are strictly specific for mono-substituted d-xylosyl moieties (AXH-m) do not hydrolyze synthetic di-arabinofuranosylated substrates, while those specific for di-substituted moieties (AXH-d) remove a single l-arabinofuranosyl (l-Araf) group. GH51 Abfs, which are supposedly AXH-m enzymes, can release l-Araf from disubstituted d-xylosyl moieties, when these are non-reducing terminal groups.

Conclusions and general significance

The present study reveals that although the activity of Abfs on artificial substrates can be quite different from that displayed on natural substrates, enzyme specificity is well conserved. This implies that carefully chosen artificial substrates bearing di-arabinofuranosyl d-xylosyl moieties are convenient tools to probe selectivity in new Abfs. Moreover, this study has further clarified the relative promiscuity of GH51 Abfs, which can apparently hydrolyze terminal disubstitutions in AXOS, albeit less efficiently than mono-substituted motifs.     

金佛山方竹经营对扁刺栲群落物种多样性和优势种种群结构的影响

为探讨金佛山方竹经营对扁刺栲群落物种多样性和优势种种群结构的影响,该研究以金佛山的扁刺栲自然群落和金佛山方竹经营群落为对象,分析了两类群落的物种组成特征、物种多样性及优势种种群结构。结果表明：(1)两种群落内共记录维管束植物84种,隶属于40科63属,以樟科、蔷薇科、壳斗科、山茶科物种为主;扁刺栲为群落优势种,中华木荷和灰柯为次优势种,金佛山方竹为灌木层优势种,扁刺栲群落组成与亚热带其他地区的扁刺栲群落组成相似。(2)金佛山方竹经营群落的灌木层物种丰富度显著低于自然群落,草本层Shannon-Wiener指数和Pielou指数均显著低于自然群落。(3)扁刺栲和灰柯在自然群落中为稳定型种群,而在金佛山方竹经营群落中为衰退型种群,中华木荷在两类群落中均为衰退型种群。(4)自然群落中扁刺栲、中华木荷、灰柯种群的萌枝率、有萌个体率和幼苗相对优势度均高于金佛山方竹经营群落。综上认为,金佛山方竹经营对金佛山扁刺栲群落灌木层和草本层物种多样性产生了负面影响,并显著影响扁刺栲群落优势种种群更新和维持。