Predicting the Location and Spatial Extent of Submerged Coral Reef Habitat in the Great Barrier Reef World Heritage Area,Australia

Aim

Coral reef communities occurring in deeper waters have received little research effort compared to their shallow-water counterparts, and even such basic information as their location and extent are currently unknown throughout most of the world. Using the Great Barrier Reef as a case study, habitat suitability modelling is used to predict the distribution of deep-water coral reef communities on the Great Barrier Reef, Australia. We test the effectiveness of a range of geophysical and environmental variables for predicting the location of deep-water coral reef communities on the Great Barrier Reef.

Location

Great Barrier Reef, Australia.

Methods

Maximum entropy modelling is used to identify the spatial extent of two broad communities of habitat-forming megabenthos phototrophs and heterotrophs. Models were generated using combinations of geophysical substrate properties derived from multibeam bathymetry and environmental data derived from Bio-ORACLE, combined with georeferenced occurrence records of mesophotic coral communities from autonomous underwater vehicle, remotely operated vehicle and SCUBA surveys. Model results are used to estimate the total amount of mesophotic coral reef habitat on the GBR.

Results

Our models predict extensive but previously undocumented coral communities occurring both along the continental shelf-edge of the Great Barrier Reef and also on submerged reefs inside the lagoon. Habitat suitability for phototrophs is highest on submerged reefs along the outer-shelf and the deeper flanks of emergent reefs inside the GBR lagoon, while suitability for heterotrophs is highest in the deep waters along the shelf-edge. Models using only geophysical variables consistently outperformed models incorporating environmental data for both phototrophs and heterotrophs.

Main Conclusion

Extensive submerged coral reef communities that are currently undocumented are likely to occur throughout the Great Barrier Reef. High-quality bathymetry data can be used to identify these reefs, which may play an important role in resilience of the GBR ecosystem to climate change.     

Patterns of coral recruitment at the Gneering Shoals,southeast Queensland,Australia

Recruitment patterns of scleractinian corals were investigated at the Gneering Shoals, a coral-dominated rocky-reef south of the Great Barrier Reef, in subtropical Queensland. The density of recruits (mean of 0.8 to 6.3 recruits per tile (15 cm × 15 cm) pair from 4 sites) was the lowest ever recorded from six regions in tropical or subtropical eastern Australia that have been studied using directly comparable methods. Recruitment in summer was dominated by recruits from the Family Acroporidae, while corals from the Family Pocilloporidae recruited throughout the year. Recruits of massive corals andTurbinaria sp., which dominate the established coral communities, were absent. Possible explanations for the low recruitment rate in the region, include the depth of most sites (> 10m), competition for space with fouling organisms, and isolation, that is the failure of the south flowing East Australian Current to supply tropical larvae regularly from the Great Barrier Reef, 250 km to the north. The low coral recruitment rate at Gneering Shoals indicates that this region is unlikely to act as a stepping-stone for dispersal of tropical corals to more southern regions, which are more directly influenced by the East Australian Current.     

Identification and quantitation of near-UV absorbing compounds (S-320) in a hermatypic scleractinian

Reef-building corals from shallow waters are known to contain a suite of water soluble compounds (collectively named S-320) which strongly absorb near-UV light. Compounds of this type have now been isolated from the Pacific staghor coral Acropora formosa and identified as a series of mycosporine-like amino acids including mycosporine-Gly (_max=310nm), palythine (_max=320nm) and palythinol (_max=332nm). These compounds were separated and quantified by high-performance liquid chromatography. Serial extraction efficiencies were calculated using a simple formula which is derived herein. For 12-cm long coral branches collected from a depth of 3 m at Rib Reef, Great Barrier Reef, Australia (146° 53E, 18° 29S) the average concentrations of mycosporine-Gly, palythine, and palythinol were 37.8, 56.4 and 0.895 nmol per mg coral protein, respectively. The coral samples can be stored at-20°C for at least 144 days without degradation of the mycosporinelike amino acids.Contribution number 334 from the Australian Institute of Marine Science     

Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia)

Current scientific consensus is that inshore regions of the central and southern Great Barrier Reef, Australia, are at risk of impacts from increased nutrient (as well as sediment and pesticide) loads delivered to Reef waters. Increases in the discharge of water quality contaminants to the Reef are largely a consequence of the expansion of agricultural practices in northern Queensland catchments following European settlement in the 1850s. In particular, the presence of elevated chlorophyll a and nutrient concentrations in many parts of the inshore Great Barrier Reef together with intense and extensive phytoplankton blooms following the discharge of nutrient-rich river flood waters suggest that the central and southern inshore area of the Great Barrier Reef is likely to be significantly impacted by elevated nutrient loads. The biological consequences of this are not fully quantified, but are likely to include changes in reef condition including hard and soft coral biodiversity, macroalgal abundance, hard coral cover and coral recruitment, as well as change in seagrass distribution and tissue nutrient status. Contemporary government policy is centered around promotion and funding of better catchment management practices to minimize the loss of catchment nutrients (both applied and natural) and the maintenance of a Reef wide water quality and ecosystem monitoring program. The monitoring program is designed to assess trends in uptake of management practice improvements and their associated impacts on water quality and ecosystem status over the next 10 years. A draft set of quantitative criteria to assess the eutrophication status of Great Barrier Reef waters is outlined for further discussion and refinement.     

Skeletal isotope microprofiles of growth perturbations in<Emphasis Type="Italic"> Porites</Emphasis> corals during the 1997–1998 mass bleaching event

Severe coral bleaching occurred throughout the tropics in 1997/98. We report high-resolution skeletal oxygen isotope (¹⁸O) and carbon isotope (¹³C) microprofiles for bleached corals from Pandora Reef, Great Barrier Reef, and Ishigaki Island, Japan, in order to examine the ability of Porites corals to record clear signals of bleaching. Analysis of the annual cycle in ¹⁸O revealed abrupt reductions in skeletal extension immediately after the 1997–98 summer temperature maximum, indicating that bleaching inhibits coral calcification. Skeletal ¹³C in the Ishigaki corals showed lower values during bleaching, indicating depressed coral metabolism associated with a reduction in calcification. In contrast, microprofiles of skeletal ¹³C from the shaded sides of Pandora Reef corals exhibited little change, possibly because algal photosynthesis was already slow prior to bleaching, thus subduing the ¹³C-response to bleaching. Comparison of ¹⁸O microprofiles from bleached corals with instrumental temperature records showed that Porites corals can recover following 5 months with little skeletogenesis. The results indicate that isotopic microprofiling may be the key to identifying gaps in coral growth that are diagnostic of past bleaching events. We have tested this hypothesis using blue UV fluorescent bands to guide us to coral skeleton where isotope microprofiling identifies bleaching events in 1986, 1989, and 1990. These events, detected by proxy, suggest that coral bleaching may have occurred more commonly on Ishigaki Island than previously recorded.     

Latitudinal variation in coral communities in eastern Australia: a qualitative biophysical model of factors regulating coral reefs

The processes underlying the distributional limits of both corals and coral reefs can be elucidated by examining coral communities at high latitudes. Coral-dominated communities in eastern Australia cover a latitudinal range of >2,500 km, from the northern Great Barrier Reef (11°S) to South West Rocks (31.5°S). Patterns of coral species richness from 11 locations showed a clear separation between the Great Barrier Reef and subtropical sites, with a further abrupt change at around 31°S. Differences in community structure between the Great Barrier Reef and more southern sites were mainly attributable to higher cover of massive corals, branching Acropora, dead coral and coralline algae on the Great Barrier Reef, and higher cover of macroalgae and bare rock at more southern sites. The absence of some major reef-building taxa (i.e., staghorn Acropora and massive Porites) from most subtropical sites coincided with the loss of reef accretion capacity. Despite high cover of hard corals in communities at up to 31°S, only Lord Howe Island contained areas of reef accretion south of the Great Barrier Reef. Factors that have been hypothesized to account for latitudinal changes in coral community structure include water temperature, aragonite saturation, light availability, currents and larval dispersal, competition between corals and other biota including macroalgae, reduced coral growth rates, and failure of coral reproduction or recruitment. These factors do not operate independently of each other, and they interact in complex ways.     

Form and seismic stratigraphy of Halimeda banks in part of the northern Great Barrier Reef Province

Twenty-six percent of the total shelf area in the Northern Region of the Great Barrier Reef Province between latitudes 14°27 and 15°02S is occupied by algal (Halimeda) lithofacies. Sea-bed relief over this bankforming algal lithofacies, which dominates the outer shelf, is generally complex and variable over relatively short distances, but lateral continuity of morphological features near Petricola and Stewart shoals has been demonstrated by parallel profiling. The most prominent subbttom reflector is a pre-Holocene erosion surface, regarded as the Holocene/Pleistocene unconformity. In this area, the maximum thickness of Holocene Halimeda banks above the main subbottom reflector is 19 m. Seismic response suggests three main sequences in the Halimeda bank depostis, which probably relate to changes in environmental conditions, and the recognition of similar seismic characteristics in the deposits beneath the Holocene/Pleistocene unconformity indicates that Halimeda banks may have been a feature of the outer shelf of the Great Barrier Reef in Plesitocene times.     

Distribution of Acanthaster planci at Lord Howe Island,the southern-most Indo-Pacific reef

Lord Howe Island, at 31°33S, supports the southern-most coral reef in the Indo-Pacific region, located approximately 150 and 200 km south of Elizabeth and Middleton Reefs and 1000 km south of the Great Barrier Reef (GBR). Systematic SCUBA searches in 1987 indicated that Acanthaster planci was present at 3 of 10 sites surveyed, at densities of up to 5 individuals ha^-1. Further surveys in 1989 indicated that the population was increasing, with densities of 20–46 ha^-1 recorded from 7 of 13 sites. The size structures of the 1987 and 1989 populations were suggestive of annual recruitment since 1985. Individuals larger than 25 cm diameter were gravid during both surveys, raising the possibility that the population may be self-seeding. Alternatively, the population may be maintained by larvae dispersed in the East Australian Current from the southern GBR or in eddies from Elizabeth and Middleton Reefs. This study provides the first records for distribution of 7 species of scleractinian coral at Lord Howe Is. Reef.     

Linear extension rate is independent of colony size in the coral Pocillopora damicornis

Measurements of the skeletal extension rate of branches of the reef coral Pocillopora damicornis showed that the linear extension rate is independent of colony size for colonies from 1.9 to 19 cm in diameter. Analysis of existing data from Western Australia, Samoa, the Great Barrier Reef and Hawaii supports the finding that linear extension is not related to colony size in this species.     

Ostracoda (Crustacea) from Lizard Island,northern Great Barrier Reef,Australia. II. The family Paradoxostomatidae Brady & Norman, 1889

The present paper deals with the taxonomy of the ostracod family Paradoxostomatidae Brady & Norman, 1889 from the coral reefs around Lizard Island, northern Great Barrier Reef, Australia. 18 species were found, all of them belonging to the genusParadoxostoma Fischer, 1855. 2 species had been previously described from Heron Island, southern Great Barrier Reef. 1 species had been described from the Red Sea. 2 species are left in open nomenclature.     

Coral bleaching at Low Isles during the 1928–1929 Great Barrier Reef Expedition

Coral Reefs - The Great Barrier Reef Expedition (1928–1929) observed two of the earliest known examples of coral bleaching during a 13-month stay on Low Isles, northern Great Barrier Reef,...     

Observations of wind-driven surface gravity waves offshore from the Great Barrier Reef

A 3 month long record of pressure from a nearsurface-resident instrument deployed at 18° S at the Queensland shelf break, offshore from the Great Barrier Reef, has been analysed. No discrete wind-sea and swell spectra can be identified, nor is there evidence for frequency-dependent wave dispersion. The wave spectral width and significant wave height are strongly related to local meteorological events, and the response appears to be both fetch limited and wind duration dependent. A near-gale sea state on the Beaufort scale is experienced during strong trade winds. It is suggested that waves make an important contribution to the physical oceanography, the geomorphology and the ecology of coral reefs near the shelf break of the Great Barrier Reef.     

Ten microsatellite loci for the reef‐building coral Acropora millepora (Cnidaria,Scleractinia) from the Great Barrier Reef,Australia

Here we present nine novel, polymorphic microsatellite loci developed for the scleractinian coral Acropora millepora (Acroporidae) from the Great Barrier Reef. In addition, we have assessed the specificity and polymorphism of five microsatellite loci previously developed for a Caribbean congener and one locus developed for an Indo‐Pacific congener. Only one of the latter six loci produced reliable results, yielding a total of 10 polymorphic microsatellite loci for A. millepora. Variability was tested on 20–23 individuals from a single population, plus another ～10 individuals from each of three different populations, resulting in five to 20 alleles per locus.     

Constancy and Change in some Great Barrier Reef Coral Communities: 1980-1991

Disturbances have played major roles in shaping community structurein Great Barrier Reef coral communities in the period 1980–90.Major causes of coral death have been a coral bleaching episodein 1982, predation by crown of thorn starfish Acanthaster planci,and cyclone damage. A series of 30 permanent photo-transectswas established on six reefs on the Great Barrier Reef in 1979–80.This is a very small sample, but nearly all transects were affectedby one or other of these disturbances early in the decade. Thechanges are summarised as transitions among five stages identifiedin a model incorporating "normal" and "abnormal" patch dynamicsof coral communities. The major disturbances of bleaching, crownof thorns and cyclones tend to cause high coral mortality overlarge areas, but nevertheless it was surprising that such alarge proportion of photo-transects was affected. By the endof the decade, none of the damaged transects had "recovered,"in terms of percentage coral cover or numbers of new colonies.Photo-transects and visual surveys showed sites deeper than3 m had particularly poor recovery. Hydrodynamic models predictconsiderable patchiness in larval availability, an essentialprecursor for coral recolonization.     

Effects of sediment deposition on the seaweed Sargassum on a fringing coral reef

 Coral reef degradation may involve shifts from coral to algal dominance and may be caused in part by increased sediment loads. Inshore fringing reef flats in the central Great Barrier Reef region are often subjected to periods of high sedimentation and are often dominated by macroalgae such as Sargassum. Experiments reported here examine the impacts of sediments on the recruitment, growth, survival, degeneration and vegetative regeneration of Sargassum microphyllum on a fringing coral reef flat in the central Great Barrier Reef. Comparison of three levels of sediment deposition (experimental addition, control (ambient condition) and experimental removal) showed that increased amounts of sediment significantly decreased rates of recruitment, growth, survival and vegetative regeneration, but not degeneration of S. microphyllum. In addition, the regenerative ability of S. microphyllum thalli with short, persistent erect branches (untreated) was compared with that of thalli experimentally cut back to the holdfast. This experimental damage significantly reduced regeneration. Accepted: 6 October 1997     

No-take reserves protect coral reefs from predatory starfish

The crown-of-thorns starfish, Acanthaster planci, is a predator of corals that is a major management issue on coral reefs [1]. It occurs throughout the Indo–Pacific and shows boom–bust population dynamics with low background densities and intermittent outbreaks. Three waves of population outbreaks have affected Australia's Great Barrier Reef (GBR) since the 1960s. The waves of outbreaks appear to start 15°S [2] and progress southward through the central GBR (Figure 1A), causing major losses of living coral on many reefs across a large area and dwarfing losses from other disturbances such as storms or coral bleaching over the same period [3]. Humans can potentially influence starfish population dynamics by exploiting predators, though evidence to date is circumstantial. Extensive surveys in the GBR Marine Park (GBRMP) show that protection from fishing affects the frequency of outbreaks: the relative frequency of outbreaks on reefs that were open to fishing was 3.75 times higher than that on no-take reefs in the mid-shelf region of the GBR, where most outbreaks occur, and seven times greater on open reefs if all reefs were included. Although exploited fishes are unlikely to prey on starfish directly, trophic cascades could favour invertebrates that prey on juvenile starfish.     

Significance of <Emphasis Type="Italic">Halimeda</Emphasis> bioherms to the global carbonate budget based on a geological sediment budget for the Northern Great Barrier Reef,Australia

Since the correlation between carbon dioxide (CO₂) levels and global temperatures was established in the ice core records, quantifying the components of the global carbon cycle has become a priority with a view to constraining models of the climate system. The marine carbonate budget is still not adequately constrained and the quantitative significance of the calcareous green alga Halimeda still remains particularly poorly understood. Previously, it has been suggested that Halimeda bioherms on the shelf of the Great Barrier Reef may contain a volume of carbonate equal to or greater than that contained within the shelf edge coral reefs. This study uses published datasets to test this hypothesis in the Northern Great Barrier Reef (NGBR) province. It is estimated that Halimeda bioherms on the outer shelf of the NGBR contain at least as much (and up to four times more) CaCO₃ sediment as the adjacent ribbon reef facies. Globally, if these findings are even only partially applicable, the contribution of shallow water carbonate sediments to the global carbon budget based on coral reefs alone is currently substantially underestimated.     

Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011)

Formal monitoring of the Great Barrier Reef was initiated in 1986 in response to the clear scientific evidence (and growing public concern) over the loss of corals caused by two protracted outbreaks of crown-of thorns starfish, which began in 1962 and 1979. Using monitoring data from manta tows along and across the Great Barrier Reef, Sweatman et al. (Coral Reefs 30:521–531, 2011) show that coral cover after these outbreaks declined further from 28 to 22% between 1986 and 2004. Pointing to the current levels of protection of the Great Barrier Reef, they state that earlier estimates of losses of coral cover since the early 1960s have been exaggerated. However, the loss of close to one-quarter of the coral cover over the past two decades represents an average loss of 0.34% cover per year across the whole GBR after 1986, which is very similar to previously reported rates of annual loss measured over a longer timeframe. The heaviest recent losses have occurred on inshore and mid-shelf reefs, which Sweatman et al. (Coral Reefs 30:521–531, 2011) attribute to a natural cycle of disturbance and recovery. But there has been very limited recovery. While coral cover has increased for short periods on some individual reefs, it has declined sharply on many more to produce the observed system-wide trend of declining cover. Close to 40% of coral cover on inner reefs has been lost since 1986. Of particular significance is the new evidence that coral cover has remained unchanged or declined further from a low 1986 baseline in 28 out of 29 sub-regions of the Great Barrier Reef, indicating a gradual erosion of resilience that is impeding the capacity of this huge reef system to return towards its earlier condition. This result, and other clear evidence of widespread incremental degradation from overfishing, pollution, and climate change, calls for action rather than complacency or denial.     

GENETIC STRUCTURE OF GIANT CLAM (TRIDACNA MAXIMA) POPULATIONS IN THE WEST PACIFIC IS NOT CONSISTENT WITH DISPERSAL BY PRESENT-DAY OCEAN CURRENTS

The Pacific marine biota, particularly species with long planktonic larval stages, are thought to disperse widely throughout the Pacific via ocean currents. The little genetic data available to date has supported this view in that little or no significant regional differentiation of populations has been found over large geographical distances. However, recent data from giant clams has demonstrated not only significant regional differentiation of populations, but routes of gene flow that run perpendicular to the main present-day ocean currents. Extensive surveys of genetic variation at eight polymorphic loci in 19 populations of the giant clam Tridacna maxima, sampled throughout the West and Central Pacific, confirmed that the patterns of variation seen so far in T. gigas were not unique to that species, and may reflect a fundamental genetic structuring of shallow-water marine taxa. Populations of T. maxima within highly connected reef systems like the Great Barrier Reef were panmictic (average F_ST < 0.003), but highly significant genetic differences between reef groups on different archipelagos (average F_ST = 0.084) and between West and Central Pacific regions (average F_ST = 0.156) were found. Inferred gene flow was high (N_em usually > 5) between the Philippines and the Great Barrier Reef, between the Philippines and Melanesia (the Solomon Islands and Fiji), and between the Philippines and the Central Pacific island groups (Marshall Islands, Kiribati, Tuvalu and Cook Islands). Gene flow was low between these three sets of island chains (N_em < 2). These routes of gene flow are perpendicular to present-day ocean currents. It is suggested that the spatial patterns of gene frequencies reflect past episodes of dispersal at times of lower sea levels which have not been erased by subsequent dispersal by present-day circulation. The patterns are consistent with extensive dispersal of marine species in the Pacific, and with traditional views of dispersal from the Indo-Malay region. However, they demonstrate that dispersal along present-day ocean surface currents cannot be assumed, that other mechanisms may operate today or that major dispersal events are intermittent (perhaps separated by several thousands of years), and that the nature and timing of dispersal of Pacific marine species is more complex than has been thought.     

Recruitment patterns of scleractinian corals in an isolated sub-tropical reef system

The density of recruits of scleractinian corals on settlement plates at Lord Howe Island, a small isolated sub-tropical island 630 km off the Australian coastline, was within the range of values reported for comparable studies on the Great Barrier Reef. However, there was a difference in the relative abundance of taxonomic groups, with recruitment at Lord Howe Island during the summer of 1990/91 dominated by corals from the Family Pocilloporidae, Family Poritidae, and sub-genus Acropora (Isopora) (in order of abundance). By contrast, on the Great Barrier Reef, recruits are generally predominantly species from the Family Acroporidae (other than the Acropora (Isopora) group). Both the recruits and the established coral communities at Lord Howe Island are dominanted by corals which release brooded planulae, as opposed to the pattern of mass-spawning with external fertilisation more typical of Great Barrier Reef corals. I hypothesise that the release of brooded planulae would be advantageous in an isolated reef community because (a) brooded larvae can travel large distances and survive the journey to the isolated reef and/or (b) brooded larvae have a shorter period before they are competent to settle and are therefore more likely to be retained on the parental reef once a population has been established.