Reciprocal translocations: a trap for cytogenetists?

We report four cases of subjects with phenotypic abnormalities and mental retardation associated with apparently balanced translocations, two inherited and two de novo, which showed, by molecular analysis, a hidden complexity. All the cases have been analyzed with different molecular techniques, including array-CGH, and in two of them the translocation breakpoints have been defined at the level of base pairs via studies in somatic hybrids containing single derivative chromosomes. We demonstrated that all the translocations were in fact complex rearrangements and that an imbalance was present in three of them, thus accounting for the phenotypic abnormalities. In one case, a Prader–Willi subject, we were not able to determine the molecular cause of his phenotype. This study, while confirming previous data showing unexpected complexity in translocations, further underscores the need for molecular investigations before taking for granted an apparently simple cytogenetic interpretation.R. Ciccone and R. Giorda contributed equally to this work     

Is the Felsenstein zone a fly trap?

Although long-branch attraction, the incorrect grouping of long lineages in a phylogeny because of systematic error, has been identified as a potential source of error in phylogenetic analysis for almost two decades, no empirical examples of the phenomenon exist. Here, I outline several criteria for identifying long-branch attraction and apply these criteria to 18S ribosomal DNA (rDNA) sequence data for 13 insects. Parsimony and minimum evolution with p distances group the two longest branches together (those leading to Strepsiptera and Diptera). Simulation studies show that the long branches are long enough to attract. When a tree is assumed in which Strepsiptera and Diptera are separated and many data sets are simulated for that tree (using the parameter estimates for that tree for the original data), parsimony analysis of the simulated data consistently groups Strepsiptera and Diptera. Analyses of the 18S rDNA sequences using methods that are less sensitive to the problem of long-branch attraction estimate trees in which the long branches are separate.     

Sticky trap monitoring of a pest–predator system in glasshouse tomato crops: are available trap colours sufficient?

Monitoring of pest presence and population development in the crop during the season is essential for integrated pest management. Although many tools, for instance coloured sticky traps, have been developed, the full advantage of available information is rarely taken into account in decision‐making. The reasons behind include high workload in practice but also the poorly studied relationships between trap catches and populations in the crop. Here, we investigate whether commercially available coloured sticky traps can be used as tool to monitor population densities of a pest–predator system in glasshouse tomato. The response of Macrolophus pygmaeus (Rambur) (Hemiptera, Miridae) to blue and yellow sticky traps was tested in laboratory and glasshouse experiments. The results indicate that M. pygmaeus can be monitored equally well with both trap colours. The number of trapped insects showed good correlation with the population densities on the crop. Under growing conditions, more M. pygmaeus were trapped on blue compared with yellow sticky traps. However, due to the known preference of Trialeurodes vaporariorum (Westwood) (Hemiptera, Aleyrodidae), yellow traps should be used for a combined pest–predator monitoring.     

Effects of a habitat-altering invader on nesting sparrows: An ecological trap?

Many invading species impact native species through predation, parasitism or competition, while others affect natives indirectly by restructuring their habitat. How invasive plants affect native animals, and to what extent native animals respond to changes in their habitat and the novel selection pressures that follow, is not well known. We investigated the impacts of a habitat-altering invader, the Atlantic cordgrass Spartina alterniflora, on the nesting success of Alameda song sparrows (Melospiza melodia pusillula), a California Species of Special Concern, in tidal marshes in three sites in San Francisco Bay. Date of laying was the most influential factor in determining daily survival rate of nests, but whether the nest was placed in exotic Spartina was the most important ecological variable. Nests placed in exotic Spartina had a success rate that was 30% lower than those placed in native vegetation. Nests in exotic Spartina were significantly more likely to fail due to tidal flooding than were nests placed in native vegetation, because the densest stands of exotic Spartina occurred at significantly lower elevations relative to the tides. Our results suggest that exotic Spartina may be an ecological trap for song sparrows in San Francisco Bay, attracting birds to nest sites that are often destroyed by tidal flooding.     

Developmental trap or demographic bonanza? Opposing consequences of earlier phenology in a changing climate for a multivoltine butterfly

A rapidly changing climate has the potential to interfere with the timing of environmental cues that ectothermic organisms rely on to initiate and regulate life history events. Short‐lived ectotherms that exhibit plasticity in their life history could increase the number of generations per year under warming climate. If many individuals successfully complete an additional generation, the population experiences an additional opportunity to grow, and a warming climate could lead to a demographic bonanza. However, these plastic responses could become maladaptive in temperate regions, where a warmer climate could trigger a developmental pathway that cannot be completed within the growing season, referred to as a developmental trap. Here we incorporated detailed demography into commonly used photothermal models to evaluate these demographic consequences of phenological shifts due to a warming climate on the formerly widespread, multivoltine butterfly (Pieris oleracea). Using species‐specific temperature‐ and photoperiod‐sensitive vital rates, we estimated the number of generations per year and population growth rate over the set of climate conditions experienced during the past 38 years. We predicted that populations in the southern portion of its range have added a fourth generation in recent years, resulting in higher annual population growth rates (demographic bonanzas). We predicted that populations in the Northeast United States have experienced developmental traps, where increases in the thermal window initially caused mortality of the final generation and reduced growth rates. These populations may recover if more growing degree days are added to the year. Our framework for incorporating detailed demography into commonly used photothermal models demonstrates the importance of using both demography and phenology to predict consequences of phenological shifts.     

Is coarse woody debris in lakes a refuge or a trap for benthic invertebrates exposed to fish predation?

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The lost generation hypothesis: could climate change drive ectotherms into a developmental trap?

Climate warming affects the rate and timing of the development in ectothermic organisms. Short‐living, ectothermic organisms (including many insects) showing thermal plasticity in life‐cycle regulation could, for example, increase the number of generations per year under warmer conditions. However, changed phenology may challenge the way organisms in temperate climates deal with the available thermal time window at the end of summer. Although adaptive plasticity is widely assumed in multivoltine organisms, rapid environmental change could distort the quality of information given by environmental cues that organisms use to make developmental decisions. Developmental traps are scenarios in which rapid environmental change triggers organisms to pursue maladaptive developmental pathways. This occurs because organisms must rely upon current environmental cues to predict future environmental conditions and corresponds to a novel case of ecological or evolutionary traps. Examples of introduced, invasive species are congruent with this hypothesis. Based on preliminary experiments, we argue that the dramatic declines of the wall brown Lasiommata megera in northwestern Europe may be an example of a developmental trap. This formerly widespread, bivoltine (or even multivoltine) butterfly has become a conundrum to conservationist biologists. A split‐brood field experiment with L. megera indeed suggests issues with life‐cycle regulation decisions at the end of summer. In areas where the species went extinct recently, 100% of the individuals developed directly into a third generation without larval diapause, whereas only 42.5% did so in the areas where the species still occurs. Under unfavourable autumn conditions, the attempted third generation will result in high mortality and eventually a lost or ‘suicidal’ third generation in this insect with non‐overlapping, discrete generations. We discuss the idea of a developmental trap within an integrated framework for assessing the vulnerability of species to climate change.     

Vriesea friburgensis: A natural trap or a nurse plant in coastal sand dunes?

Positive interactions between plants play a fundamental role in environments with extreme conditions, such as coastal sand dunes, where the establishment of many species is limited by high temperature, and low availability of water and nutrients in the soil. The ability to store water and enrich the soil with nutrients characterizes bromeliads as potential nurse plants for other species. This study aimed to analyze the potential of the bromeliad Vriesea friburgensis to act as a nurse plant, and to compare this interaction in coastal dunes in herbaceous versus scrub vegetation. The study was performed on Santa Catarina Island in Brazil. Juveniles of other species associated with V. friburgensis were collected within and under bromeliad tanks and on adjacent plots beside each bromeliad. The abundance, species richness and height of juveniles were recorded. We found that abundance and richness of Vf‐associated juveniles were lower than those Vf‐not associated, in herbaceous vegetation (negative interaction). However, the height of some shrubs species, like Eupatorium casarettoi and Tibouchina urvilleana, was greater when Vf‐associated (positive interaction). In scrub vegetation, the abundance and richness of juveniles were not significantly affected by V. friburgensis presence (neutral interaction). However, the height of some shrubs and trees species, like Clusia criuva, Eugenia catharinae, Myrsine parvifolia and Ocotea pulchella, was greater when Vf‐associated. Species composition associated with V. friburgensis differed from the assemblage in adjacent plots, indicating that some species interact more with nurse plants, whereas others fail to develop when associated with this bromeliad; the difference between groups in species composition was less evident in scrub vegetation areas. Clusia criuva was considered an indicator species for Vf‐associated juveniles in both vegetation types. Despite the fact that these tank bromeliads do not function as nurse plants for some species, there are others that seem to be favoured by this interaction.     

Influence of the radial profile of the electric potential on the confinement of a high-β two-component plasma in a gas-dynamic trap

One of the most important problems to be studied in the gas-dynamic trap (GDT) facility is the investigation of MHD stability and cross-field transport in a plasma with a relatively high value of β = πp/B ². Recent experiments demonstrated that the radial electric field produced in the plasma by using radial limiters and coaxial end plasma collectors improves plasma stability in axisymmetric magnetic mirror systems without applying special MHD stabilizers. The experimental data presented in this work show that stable plasma confinement can be achieved by producing a radial potential drop across a narrow region near the plasma boundary. Creating radial electric fields of strength 15–40 V/cm causes a shear plasma flow, thereby substantially increasing the plasma confinement time. When all the radial electrodes were grounded, the confinement was unstable and the plasma confinement time was much shorter than the characteristic time of plasma outflow through the magnetic mirrors. Measurements of cross-field plasma fluxes with the use of a specially designed combined probe show that, in confinement modes with differential plasma rotation, transverse particle losses are negligibly small as compared to longitudinal ones and thus can be ignored. It is also shown that, when the GDT plasma is in electric contact with the radial limiters and end collectors, the growth rate of interchange instability decreases considerably; such a contact, however, does not ensure complete MHD stability when the electrodes are at the same potential.     

Validation of the live trap ‘Krefelder Fuchsfalle’ in combination with electronic trap sensors based on AIHTS standards

Live traps are established in pest control, fishing and hunting, but they are discussed to compromise animal welfare due to inadequate construction and control of the trap. To assure animal welfare, the Agreement on International Humane Trapping Standards (AIHTS) demands for legal regulations regarding trapping devices. According to AIHTS, the certification of each trap is based on evaluation in 20 individuals of a specific animal species (target species). To this end, more than 80% of the animals must not show specific alterations of physiology and behaviour or potential injuries.The aim of this study was to evaluate the ‘Krefelder Fuchsfalle’, equipped with an electronic trap system, according to AIHTS standards. The raccoon (Procyon lotor) was chosen as target species, as it is an invasive species in urban regions of Central Europe, a potential vector for zoonotic pathogens, and a skilful animal, which potentially is most difficult to meet the AIHTS requirements. The behaviour of the trapped animal was evaluated, before shooting it and performing radiographical, pathological and histological examination.In total, 20 raccoons were trapped within 10 months in a hunting district in Hesse, Germany. Mean period of stay within the trap were 6.39 h. Despite of 14 animals, which demonstrated low-grade excoriations (superficial skin layer) at the paws and rhinarium, no other injuries or alterations of physiology and behaviour were detected.Therefore, this study demonstrates that the ‘Krefelder Fuchsfalle’ fulfilled the AIHTS standards and accomplished trapping according to animal welfare.     

The air spora close to a compost facility in Northeast Oklahoma: Part I—spore trap sampling

A compost facility in northeast Oklahoma is located relatively close to a residential area and is the focus of complaints about smell and concerns about health effects. Several species of Aspergillus have been known to cause health problems, and at least one of these species is dominant in compost. The atmosphere surrounding the compost facility was monitored for 1 year using Burkard spore traps to determine if there was a significant difference in Penicillium/Aspergillus type spores concentration between a test and control site. Samplers were situated 710 m downwind for the test site and 6,085 m upwind at the control site. There was no significant difference in mean concentration of Penicillium/Aspergillus type spores between the two sites (t = 0.576 P > 0.05). The mean concentration of total spores was significantly higher at the upwind control site (t = −7.64, P < 0.01). Wind direction was examined to determine if the compost facility was a possible source for any spikes in concentration. No clear relationship was found between wind direction and mean Penicillium/Aspergillus concentration at the test site, but peak concentrations of Penicillium/Aspergillus seen at the test site were on days when it was downwind from the composting facility. However, these concentrations were no higher than those seen at the control site on other days. If the compost was releasing large amounts of Penicillium/Aspergillus type spores into the atmosphere they were generally diluted to background levels by the time they reached the test site.     

Is the Mbita trap a reliable tool for evaluating the density of anopheline vectors in the highlands of Madagascar?

BACKGROUND: One method of collecting mosquitoes is to use human beings as bait. This is called human landing collection and is a reference method for evaluating mosquito density per person. The Mbita trap, described by Mathenge et al in the literature, consists of an entry-no return device whereby humans are used as bait but cannot be bitten. We compared the Mbita trap and human landing collection in field conditions to estimate mosquito density and malaria transmission. METHODS: Our study was carried out in the highlands of Madagascar in three traditional villages, for 28 nights distributed over six months, with a final comparison between 448 men-nights for human landing and 84 men-nights for Mbita trap, resulting in 6,881 and 85 collected mosquitoes, respectively. RESULTS: The number of mosquitoes collected was 15.4 per human-night and 1.0 per trap-night, i.e. an efficiency of 0.066 for Mbita trap vs. human landing. The number of anophelines was 10.30 per human-night and 0.55 per trap-night, i.e. an efficiency of 0.053. This efficiency was 0.10 for indoor Anopheles funestus, 0.24 for outdoor An. funestus, and 0.03 for Anopheles arabiensis. Large and unexplained variations in efficiency were observed between villages and months. CONCLUSION: In the highlands of Madagascar with its unique, highly zoophilic malaria vectors, Mbita trap collection was poor and unreliable compared to human landing collections, which remains the reference method for evaluating mosquito density and malaria transmission. This conclusion, however, should not be extrapolated directly to other areas such as tropical Africa, where malaria vectors are consistently endophilic.     

Is the Mbita trap a reliable tool for evaluating the density of anopheline vectors in the highlands of Madagascar?

Background

Malaria can be eradicated from islands. To assess the prospects for eradication of malaria from the island of Príncipe in the Gulf of Guinea, we fitted a mathematical model to age-prevalence curves and thus obtained estimates of the vectorial capacity and of the basic reproductive number (R ₀) for malaria.

Methods

A cross-sectional malariological survey was carried out, in mid-1999, in six communities, comprising circa 17% of the total 6,000 population of the island. All houses in these communities were registered and their mode of construction recorded. Thick and thin blood films were prepared from all consenting individuals. Each individual was asked whether they possessed a mosquito net, whether they had slept under a mosquito net the previous night, whether they were allergic to chloroquine, and whether they had visited the main island of São Tomé since the beginning of the year. Outpatient records from March 1999 until the end of December 2000 were also examined and the age and place of residence of diagnosed cases noted.

Results

203 (19.8%) of the 1,026 individuals examined were found to be infected with Plasmodium falciparum. By fitting the mathematical model of the Garki project to the age-prevalence curve we estimate that the basic reproductive number, R ₀, on the island is approximately 1.6. Over a period of one year, a total of 1,792 P. falciparum cases reported to an outpatient facility at the island's hospital. Overall, 54% of the people interviewed slept under mosquito nets and were at reduced risk of infection. Conversely, people living in houses with openings between the top of the wall and the roof had higher risk of infection.

Conclusion

This high incidence suggests that most of the malaria cases on the island attend the hospital and that treatment of these cases is an important factor reducing the effective rate of transmission. Providing that clinical cases are effectively treated, endemic malaria can probably be eliminated from the island mainly by reducing exposure to the vector with simple measures such as insecticide-treated nets and mosquito-proofing of dwellings. In contrast to traditional malaria eradication strategies, this would avoid the risk of malaria epidemics because the reduction in R ₀ should be sustainable.     

Design of novel and potent cPLA2α inhibitors containing an α-methyl-2-ketothiazole as a metabolically stable serine trap

We report the design of novel, potent cPLA₂α inhibitors that possess an α-methyl-2-ketothiazole that acts as a serine-reactive moiety. We describe the optimization of the series for potency and metabolic stability towards ketone reduction. This was achieved by attenuating the reactivity of the ketone using a combination of electronic and steric effects.     

Does 3,5,dibromo-4-nitrosobenzene sulphonate spin trap superoxide radicals?

Pulse radiolysis studies show that the spin trap 3,5,dibromo-4-nitrosobenzene sulphonate (I) reacts rapidly with O2.- but the product formed is very unstable. No radicals were detected in ESR studies of solutions of I after reaction with O2.- formed by gamma-radiolysis. Evidence is presented that the stable radical observed by some, but not all workers, following exposure of I to the O2.(-)-generating xanthine/xanthine oxidase system, is produced by a peroxidatic oxidation using hydrogen peroxide formed by O2-. dismutation and that formation of this radical depends on the presence of peroxidase activity in the xanthine oxidase sample employed.     

Seasonal variation in skeletal silicification of Neodenticula seminae,a marine planktonic diatom: Sediment trap experiments in the NW Pacific Ocean (1997–2001)

Neodenticula seminae is an important component of pelagic diatom floras in the subarctic North Pacific and its adjacent seas. We conducted an SEM image analysis of four series of samples collected by sediment traps in the NW Pacific, in order to investigate the relations between its morphology, evolution, and environment. Seasonal variation in the skeletal morphology was common: lightly silicified morphs were dominant during spring blooms and in the summer (under oligotrophic conditions owing to surface water stratification and progressive nutrient limitation), whereas heavily silicified morphs became abundant in the fall and winter, subsequent to the onset of intensive vertical mixing. These observations suggest that the morphology of N. seminae is influenced by environmental factors including the nutrient availability as well as by its reproductive strategy.     

Do intruding predators and trap position affect the reliability of catches in activity traps?

Forty lakes in Sweden and Finland were sampled in 1990 with activity traps to evaluate the effects of trapped predators on invertebrate catch. Vertebrate (fish, newts) and invertebrate (leeches, dragonflies, water beetles, backswimmers and water scorpions) predators were considered separately. Invertebrate predators affected neither the abundance nor the taxonomic diversity of the catches. Vertebrate predators had no effect on the abundance but reduced the taxonomic diversity of the catches significantly. Thus, vertebrate predators are a possible source of bias in activity trap catches, but only concerning taxonomic diversity. Within the depth gradient studied (0.25–0.75 m), trap position (suspended in mid-water versus on the bottom) did not affect the percentages of nektonic and benthic invertebrates in the catches. The relative abundance of all taxa was similar in the catches from different trap positions, but the relative abundance of the most numerous taxa as well as the diversity of the catches differed between trap positions. We conclude that both mid-water and bottom traps are suitable for monitoring aquatic invertebrates, and that bottom traps may be preferred for practical reasons.     

Setting an evolutionary trap: could the hider strategy be maladaptive for white-tailed deer?

An evolutionary trap occurs when an organism makes a formerly adaptive decision that now results in a maladaptive outcome. Such traps can be induced by anthropogenic environmental changes, with nonnative species introductions being a leading cause. The recent establishment of coyotes (Canis latrans) into the southeastern USA has the potential to change white-tailed deer (Odocoileus virginianus) population dynamics through direct predation and behavioral adaptation. We used movement rate and bedsite characteristics of radiocollared neonates to evaluate their antipredator strategies in the context of novel predation risk in a structurally homogeneous, fire-maintained ecosystem. Neonate bedsites had greater plant cover values compared with random sites (t = 30.136; p < 0.001), indicating bedsite selection was consistent with the hider strategy used to avoid predation. We determined selection gradients of coyote predation on neonate movement rate and plant cover and diversity at bedsites during the first 10 days of life. Interestingly, neonates that moved less and bedded in denser cover were more likely to be depredated by coyotes, meaning that greater neonate movement rate and bedsites located in less dense cover were favored by natural selection. These results are counter to expected antipredator strategies in white-tailed deer and exemplify how an adaptive response could be maladaptive in novel contexts.