Higher relatedness within groups due to variable subadult dispersal in a rainforest skink,Gnypetoscincus queenslandiae

Abstract Field observations of groups of the prickly forest skink, Gnypetoscincus queenslandiae (Reptilia: Scincidae), from north‐eastern Australia, that consist of different sized individuals under the same log have generated speculation about the social structure and dispersal patterns of this species. A total of 411 skinks were sampled from 12 rainforest sites on the Atherton Tableland in the Wet Tropics of north‐eastern Australia. Relatedness statistics calculated using nine microsatellite DNA loci showed that prickly forest skinks are significantly more related to animals within their own group than to those in other groups, and there is a significantly greater relatedness between subadults less than 2 years old and adults within the same group. This relationship was no longer apparent between individuals estimated to be 2 to 3 years old and adults in the same group. Thirty per cent of individuals estimated to be less than 2 years old were likely to be the offspring of an adult under the same log, whereas only 7% of individuals between 2 and 3 years old were. Using mark‐recapture techniques, movement distances between 0 and 94 m were recorded, with an average movement distance of 12.8 m, or 1.5 m per month between captures. Movements of 0–5 m were the most frequent for all ages and sexes. Subadults tended to move further per month on average than adults, but there was no difference in average movement between adult males and females. Thus I found little evidence to support a hypothesis of complex social structuring in prickly forest skinks. Rather, groups of lizards under logs appear to be a result of high, but variable, dispersal of subadults in their first 2 years.     

"Neighbourhood" size, dispersal and density estimates in the prickly forest skink (Gnypetoscincus queenslandiae) using individual genetic and demographic methods

Dispersal, or the amount of dispersion between an individual's birthplace and that of its offspring, is of great importance in population biology, behavioural ecology and conservation, however, obtaining direct estimates from field data on natural populations can be problematic. The prickly forest skink, Gnypetoscincus queenslandiae, is a rainforest endemic skink from the wet tropics of Australia. Because of its log-dwelling habits and lack of definite nesting sites, a demographic estimate of dispersal distance is difficult to obtain. Neighbourhood size, defined as 4piDsigma2 (where D is the population density and sigma2 the mean axial squared parent-offspring dispersal rate), dispersal and density were estimated directly and indirectly for this species using mark-recapture and microsatellite data, respectively, on lizards captured at a local geographical scale of 3 ha. Mark-recapture data gave a dispersal rate of 843 m2/generation (assuming a generation time of 6.5 years), a time-scaled density of 13 635 individuals * generation/km2 and, hence, a neighbourhood size of 144 individuals. A genetic method based on the multilocus (10 loci) microsatellite genotypes of individuals and their geographical location indicated that there is a significant isolation by distance pattern, and gave a neighbourhood size of 69 individuals, with a 95% confidence interval between 48 and 184. This translates into a dispersal rate of 404 m2/generation when using the mark-recapture density estimation, or an estimate of time-scaled population density of 6520 individuals * generation/km2 when using the mark-recapture dispersal rate estimate. The relationship between the two categories of neighbourhood size, dispersal and density estimates and reasons for any disparities are discussed.     

Fragmented forests, evolving flies: molecular variation in African populations of Drosophila teissieri

Microsatellite variation from eight loci was studied in five populations of Drosophila teissieri, a fruit-fly found only in the rain forests of sub-Saharan Africa. Five noncontiguous rain forest sites (from Tanzania, Gabon and Ivory Coast) were sampled to measure the effects of historical forest fragmentation on population structure in an obligatory forest-dwelling species. The Ivory Coast and Gabon populations showed a wider range of alleles, different modal alleles and had a higher genetic diversity than the three East African populations. As could be expected, genetic differentiation (FST) was significantly correlated with physical distance, but the westernmost population (Ivory Coast) showed values that were intermediate between the central (Gabon) and Eastern (Tanzania) populations. A migration-drift equilibrium in a stable continuum of populations did not appear adequate to describe the observed distribution. It seems probable that the species has undergone abrupt changes involving isolation, merging and migration of populations, as a consequence of repeated waves of forest fragmentation and coalescence.     

Stream fish communities and their associations to habitat variables in a rain forest reserve in southeastern Brazil

This paper describes the spatial variability of fish communities and identifies patterns of association between fish communities and habitat variables, including anthropogenic factors. We sampled streams inside and in the surroundings of a rain forest reserve in the southeast of Brazil in the rainy season. We could distinguish three main groups of streams: upland streams (draining the upland, flat portions of the mountain ridge of Serra de Paranapiacaba), adventitious streams of clearwater mountain torrents (small streams draining confined valleys in the slopes of this sierra), and large streams of clearwater mountain torrents (relatively unconstrained large streams close to the foots of the mountains). Despite the high variability of fish communities associated with these streams we identified some patterns using exploratory statistical analyses. These patterns were corroborated by additional field observations and information from the scientific literature. The main differences in fish community composition and diversity among the three groups of streams are probably related to large-scale factors such as elevation and position of the stream in the watershed. However, differences within these three groups seem to be mostly due to site-specific factors. Differences of instream characteristics are likely to be caused by natural variability of the ecosystems but also, in some cases, by human disturbances like pollution from human settlements, agriculture and mining.     

Effects of habitat fragmentation on the functional diversity of insects in Thousand Island Lake,China

Due to habitat fragmentation, the loss of species diversity has been extensively studied. On the contrary, the effects of habitat fragmentation on functional diversity is still poorly understood. In the Thousand Island Lake, we conducted studies of insect functional diversity on a set of 29 isolated islands. We used 10 functional diversity indices from three aspects (functional richness, functional evenness and functional divergence) to respectively describe functional diversity of insects on sample islands. We found the following results: (i) The functional indices selected could reflect the functional diversity of sample islands and it is further proved that in general, three components of functional diversity were independent of each other; (ii) Sample islands could be divided into two categories, island JSD and the remaining islands; (iii) Functional richness increased with island area and shape index, but had no significant correlation with isolation. Likewise, both functional evenness and functional divergence had no significant correlation with island attributes. The conclusion to emphasize from our research is that: (i) habitat fragmentation reduced the biological functional diversity to some extent, further demonstrating the importance of habitat continuity in biodiversity protection; and (ii) for functional diversity protection of insects in a fragmented landscape, an island which has high approximate shape index values of at least hundred hectare magnitude order has a critical promoting effect.     

海南五指山热带山地雨林植物物种多样性研究

王指山热带山地雨林的物种种类十分丰富,在１ｈｍ＾２样地中共出现５４个科,１００个属的乔木树种１７７种,１３３７个个体。区系地理分析表明属的分布区类型以热带分布型成分占优,为８９．０％,充分体现了五指山山地雨林的热带性质。多样性指数分析结果为：样地１Ｍａｒｇａｌｅｆ指数１７．８２２,Ｓｈａｎｎｏｎ－Ｗｉｅｎｅｒ指数５．６２１,均匀度０．８２３,Ｓｉｍｐｓｏｎ指数０．０５０,均匀度６．７７５,表明五指     

Decreased relatedness between male prickly forest skinks (<Emphasis Type="BoldItalic">Gnypetoscincus queenslandiae</Emphasis>) in habitat fragments

In species with low levels of dispersal the chance of closely related individuals breeding may be a potential problem; sex-biased dispersal is a mechanism that may decrease the possibility of cosanguineous mating. Fragmentation of the habitat in which a species lives may affect mechanisms such as sex-biased dispersal, which may in turn exacerbate more direct effects of fragmentation such as decreasing population size that may lead to inbreeding depression. Relatedness statistics calculated using microsatellite DNA data showed that rainforest fragmentation has had an effect on the patterns of dispersal in the prickly forest skink (Gnypetoscincus queenslandiae), a rainforest endemic of the Wet Tropics of north eastern Australia. A lower level of relatedness was found in fragments compared to continuous forest sites due to a significantly lower level of pairwise relatedness between males in rainforest fragments. The pattern of genetic relatedness between sexes indicates the presence of male-biased dispersal in this species, with a stronger pattern detected in populations in rainforest fragments. Male prickly forest skinks may have to move further in fragmented habitat in order to find mates or suitable habitat logs.     

西双版纳热带山地雨林群落乔木树种多样性研究

根据块样地资料对西双版纳热带山地雨林树种多样性特征进行了分析.结果表明,在2 500m²的样地上,随着起测胸径递增,各样地乔木个体数和树种丰富度均表现为依次递减;低海拔带上(850～1000 m)的山地雨林(1、2号样地)的各指数值无一定变化规律,较高海拔带上(1200～2000 m)的山地雨林(3～6号样地)的Shannon-Wiener指数和Simpson指数均表现为依次递减,而Pielou均匀度指数则呈依次递增的趋势.较高海拔带上的山地雨林在较小乔木起测胸径(≥2 cm、≥5 cm、≥10 cm)的树种丰富度、多样性和均匀度指数均要明显大于低海拔带上的山地雨林,而两者在较大乔木起测胸径(≥20 cm、≥30 cm、≥50 cm)的各指数值无明显差异.随着取样面积的递增,各样地树种丰富度、多样性和均匀度指数在取样面积递增到2 000m²处均已趋于平缓.     

Effects of fragmentation phenomena on the genetic structure and gene flow in Centaurea cineraria group (Asteraceae) in the Mediterranean Basin

The complex history of the Mediterranean region illustrates how ancient and recent phenomena are closely associated with species distribution and the creation of phylogeographic divisions within Mediterranean flora. A good model to explore the genetic consequences of fragmentation can be found in Centaurea cineraria and its close relatives. We applied simple sequence repeat molecular markers to a dense population sampling throughout the distribution area of all C. cineraria taxa to study how fragmentation has altered the genetic structure and distribution of C. cineraria. The average gene diversity (H_e) was 0.286, and the average allelic richness (A_r) was 3.65 and ranged from 2.15 (C. gymnocarpa) to 5.25 (C. busambarensis). The F_IS averaged a relatively high 0.223, ranging from ? 0.724 in C. aeolica subsp. aeolica to 0.589 in C. leucadea. Our results indicate that habitat fragmentation over several generations reduced heterozygosity due to random genetic drift in populations of C. cineraria. This heterozygosity erosion becomes more severe when the inbreeding coefficient is positive and the outcrossing rates show a significant increase. The results observed for outcrossing rates and inbreeding coefficient could also indirectly support the possibility of disrupted gene flow or mating pattern changes in fragmented C. cineraria populations.     

Selective logging intensity in an East African rain forest predicts reductions in ant diversity

As natural forest ecosystems increasingly face pressure from deforestation, it is ever more important to understand the impacts of habitat fragmentation and degradation on biodiversity. Most studies of anthropogenic change in the tropics come from Southeast Asia and South America, and impacts of habitat modification are often taxon‐specific. Here we empirically assessed the impact of habitat fragmentation and recent (within 25 yr) and historic (>25 yr ago) selective logging on the diversity of ants in the Kakamega rain forest in western Kenya, and asked whether these forms of degradation interact as multiple stressors. We found that the severity of recent selective logging was negatively related to overall species richness and abundance as well as the richness and abundance of forest specialists, but found no detrimental effect of past selective logging or habitat fragmentation on ant diversity, although habitat fragment size was correlated with estimated species richness. There was also no effect of any form of habitat degradation on the richness or abundance of open habitat specialists, even though these species often exploit niches created in disturbed environments. Ultimately, this study reveals the detrimental impact of even moderate forms of habitat degradation on insect biodiversity in the understudied African rain forests.     

Forest fragmentation effects on palm diversity in central Amazonia

1 The effects of fragmentation on quantitative measures of floristic diversity in a palm community were examined in the Biological Dynamics of Forest Fragments study area in central Amazonia. Three 1-ha, three 10-ha, two 100-ha and three continuous forest reserves, distributed among three sites, were surveyed. In each reserve, 10 20 × 20 m plots were sampled, resulting in a total of 110 plots representing 4.4 sampled hectares.
2 The taxon composition of this palm community was dominated by stemmed, understorey palms. A total of 23 225 individuals from 36 taxa was recorded; five of the taxa were not sampled in continuous forest.
3 Taxa richness did not vary across reserve size or sites unless taxa not sampled in the continuous forest were removed from the analysis. Smaller forest fragments then harboured fewer taxa in the seedling stage than large forest fragments or continuous forest, despite the short time since isolation (10–15 years). There was a significant effect of location on the number of taxa per plot for all life stages, but only seedling and total were significantly affected by reserve size.
4 Reserve size did not affect the Shannon and Evenness indices. Reserves of similar sizes were floristically more similar than reserves of very different sizes.
5 Palms are important for the structure and composition of the forest. Their conservation may require the establishment of a number of large reserves.     

Anthropogenic fragmentation may not alter pre‐existing patterns of genetic diversity and differentiation in perennial shrubs

Many plant species have pollination and seed dispersal systems and evolutionary histories that have produced strong genetic structuring. These genetic patterns may be consistent with expectations following recent anthropogenic fragmentation, making it difficult to detect fragmentation effects if no prefragmentation genetic data are available. We used microsatellite markers to investigate whether severe habitat fragmentation may have affected the structure and diversity of populations of the endangered Australian bird‐pollinated shrub Grevillea caleyi R.Br., by comparing current patterns of genetic structure and diversity with those of the closely related G. longifolia R.Br. that has a similar life history but has not experienced anthropogenic fragmentation. Grevillea caleyi and G. longifolia showed similar and substantial population subdivision at all spatial levels (global F′_ST = 0.615 and 0.454; S_p = 0.039 and 0.066), marked isolation by distance and large heterozygous deficiencies. These characteristics suggest long‐term effects of inbreeding in self‐compatible species that have poor seed dispersal, limited connectivity via pollen flow and undergo population bottlenecks because of periodic fires. Highly structured allele size distributions, most notably in G. caleyi, imply historical processes of drift and mutation were important in isolated subpopulations. Genetic diversity did not vary with population size but was lower in more isolated populations for both species. Through this comparison, we reject the hypothesis that anthropogenic fragmentation has impacted substantially on the genetic composition or structure of G. caleyi populations. Our results suggest that highly self‐compatible species with limited dispersal may be relatively resilient to the genetic changes predicted to follow habitat fragmentation.     

生境片段化对千岛湖地表甲虫物种多样性的影响

在千岛湖片段化景观中选取20个陆桥岛屿和8个大陆样点,从2012年7月到2014年4月,按季度(春、夏、秋季)6次采用巴氏陷阱法收集地表甲虫,分析其物种多度、组成、多样性和季节动态,以及不同岛屿上的地表甲虫的物种多样性与岛屿面积和隔离度等岛屿空间特征的关系.结果表明: 共收集记录到地表甲虫26科101种3370头.大陆和大岛地表甲虫的物种丰富度有显著差异,且小岛地表甲虫密度显著高于大陆;大陆地表甲虫的物种组成变化较大,而岛屿上分布的地表甲虫的物种组成则变化较小.地表甲虫的物种丰富度与岛屿面积呈显著正相关,密度与隔离度呈显著正相关.夏季岛屿上地表甲虫物种丰富度高于春秋两季,岛屿与大陆样地的Shannon指数、Simpson指数和Pielou均匀度指数均在夏季最高、秋季最低.     

生境片断化对植物种群遗传结构的影响及植物遗传多样性保护

生境片断化是指大而连续的生境变成空间隔离的小种群的现象。生境片断化对植物种群遗传效应包括生境片断化过程中的取样效应及其后的小种群效应（遗传漂变、近交等）。理论研究表明,生境片断化后,植物种群的遗传变异程度将降低,而残留的小种群间的遗传分化程度将升高。然而对一些植物的研究表明,生境片断化对植物种群的遗传效应要受其他一些因素的影响,如世代长度、片断化时间、片断种群的大小、基因流的改变等。最后,针对生境     

Patch isolation and shape predict plant functional diversity in a naturally fragmented forest

Aims It is known that taxonomic diversity can be predicted by the spatial configuration of the habitat, in particular by its area and degree of isolation. However, taxonomic diversity is a poor predictor of ecosystem functioning. While functional diversity is strongly linked to the functionality and stability of ecosystems, little is known about how changes in the spatial configuration of the habitat affect functional diversity. In this study, we evaluated whether the spatial configuration of forest patches predicts the functional diversity of plants in a fragmented forest.Methods Five functional leaf traits (leaf dry matter content, leaf punch force, specific leaf area, leaf size and leaf thickness) were measured for 23 dominant plant species in 20 forest patches in a naturally fragmented forest on the Yucatan Peninsula. Abundance-weighted multivariate and individual trait metrics of functional diversity were calculated and correlated with size, degree of isolation and the shape of forest patches.Important findings Patch shape was negatively correlated with multivariate and individual trait (leaf dry matter content and leaf size) metrics of functional diversity. Patch isolation measures were also negatively correlated with individual trait (leaf dry matter content, leaf punch force and leaf size) metrics of functional diversity. In other words, greater patch shape irregularity and isolation degree impoverish plant functional variability. This is the first report of the negative effects of patch shape irregularity and isolation on the functional diversity of plant communities in a forest that has been fragmented for a long time.     

Ecological drivers of avian diversity in a subtropical landscape: Effects of habitat diversity,primary productivity and anthropogenic disturbance

Understanding the roles of ecological drivers in shaping biodiversity is fundamental for conservation practice. In this study, we explored the effects of elevation, conservation status, primary productivity, habitat diversity and anthropogenic disturbance (represented by human population density and birding history) on taxonomic, phylogenetic and functional avian diversity in a subtropical landscape in southeastern China. We conducted bird surveys using 1‐km transects across a total of 30 sites, of which 10 sites were located within a natural reserve. Metrics of functional diversity were calculated based on six functional traits (body mass, clutch size, dispersal ratio, sociality, diet and foraging stratum). We built simultaneous autoregression models to assess the association between the ecological factors and diversity of the local avian communities. Local avian diversity generally increased with increasing habitat diversity, human population density and primary productivity. We also detected phylogenetic and functional clustering in these communities, suggesting that the avian assemblages were structured mainly by environmental filtering, rather than interspecific competition. Compared with sites outside the natural reserve, sites within the natural reserve had relatively lower avian diversity but a higher level of phylogenetic heterogeneity.