Aırborne pollen calendar of Bartın, Turkey

Our study comprises airborne pollen analysis of the years 1995–1997 of Bartn (40°38 N–32°21 E). The aims of the study were: to determine the pollen types present in the atmosphere, to calculate their actual concentrations, and to establish the pollen calendar for Bartn. For this purpose, pollen slides of Durham apparatus, which was located in four different locations in Bartn, were examined on a weekly basis. In this study, 19062 pollen grains were counted and 18484 of those were determined on the slides in the air of Bartn during three years of period. Results show that 13758 of 18484 pollen grains belong to arboreal, 4726 belong to non-arboreal taxa. 3698 of determined non-arboreal taxa belong to Gramineae.     

Ecological Strategies of Terrestrial Plant Species Belonging Two Different Habitats in Kızılırmak Delta (Samsun/TURKEY)

Biology Bulletin - This study was carried out on four plant species in wetland and disturbed habitats within the terrestrial ecosystem. The study compares some leaf traits (foliar nitrogen and...     

Records and palaeoenvironmental conditions of Early Miocene scleractinian corals from the Fırat formation (Diyarbakır,Turkey)

Miocene scleractinian corals were documented for the first time in the Fırat Formation of Sarıca village, Eğil district of Diyarbakır, SE Turkey. The fauna consists of four hermatypic species belonging to three families: Diploastrea taurinensis (d’Achiardi, 1868), Tarbellastraea reussiana (Milne-Edwards and Haime, 1850), Echinopora gemmacea (Lamarck, 1816) and Montastraea pelouaensis (Chevalier, 1954). The morphospecies described here are typical of the early Miocene (Aquitanian-Burdigalian) and show that the Fırat Formation coral community was composed of shallow and subtropical reefs of Mediterranean Tethys palaeobiogeographical affinity. The examined species are reef components found in tropical and subtropical oceans, as are the majority of zooxanthellae. The species were upper photic zone related, had massive colonial growth morphology, and lived in a shallow tropical-subtropical marine palaeoenvironment at a depth of up to 50 m. They grew on hard ground, clean water, and normal salinity and required a minimum seawater temperature of 18 ̊C; however, they were most abundant at water temperatures ranging from 22 to 26 ̊C in high-moderate water energy. Consequently, this fossil assemblage will not only improve our knowledge of scleractinian coral diversity and morphological variation in SE Turkey but will also provide an important background for future studies of coral taxonomy, diversity and biogeography of the region.     

Effects of caffeic acid phenethyl ester (CAPE) on angiogenesis,apoptosis and oxidatıve stress ın various cancer cell lines

ABSTRACT

Cancer is a common cause of death worldwide. Approximately 80% of cancer patients use complementary or alternative medicines for treatment. Caffeic acid phenethyl ester (CAPE), the main active component of propolis, exhibits cytotoxic, antiproliferative and anti-cancer effects. Despite its anticancer effects CAPE exhibits no known harmful effects toward normal cells. We investigated the effects of CAPE on angiogenesis, apoptosis and oxidative stress using MDA MB-231, N2a and COLO 320 cell lines and CAPE treatments at 24 and 48 h. A two dimensional cell culture system was used and the findings were evaluated by an indirect immunohistochemical method and H-scores were calculated. CAPE was effective for all three cancer cell lines. After 24 and 48 h, we found a significant decrease in live cells and increased stress in the cells based on e-NOS and i-NOS levels.     

Exposure assessment of boron in Bandırma boric acid production plant

Boric acid and sodium borates have been considered as being “toxic to reproduction and development”, following results of animal studies with high doses. Experimentally, a NOAEL of 17.5 mg B/kg-bw/day (corresponds to ～2020 ng boron/g blood) has been identified for the (male) reproductive effects of boron in a multigenerational study of rats, and a NOAEL for the developmental effects in rats was identified at 9.6 mg B/kg-bw/day (corresponds to 1270 ng boron/g blood). These values are being taken as the basis of current EU safety assessments. The present study was conducted to assess the boron exposure under extreme exposure conditions in a boric acid production plant located in Band?rma, Turkey. The mean blood boron concentrations of low and high exposure groups were 72.94 ± 15.43 (48.46–99.91) and 223.89 ± 60.49 (152.82–454.02) ng/g respectively. The mean blood boron concentration of the high exposure group is still ～6 times lower than the highest no effect level of boron in blood with regard to the developmental effects in rats and ～9 times lower than the highest no effect level of boron in blood with regard to the reprotoxic effects in male rats. In this context, boric acid and sodium borates should not be considered as toxic to reproduction for humans in daily life.     

The spectrum of FMF mutations and genotypes in the referrals to molecular genetic laboratory at Kırıkkale University in Turkey

Familial Mediterranean Fever (FMF) is an autosomal recessive genetic disorder characterised by recurrent and self-limited abdominal pain, synovitis and pleuritis. MEFV gene mutations are responsible from the disease and its protein product, pyrin or marenostrin, plays an essential role in the regulation of the inflammatory reactions. MEFV gene contains 10 exons and most of the mutations have been found on the last exon. Up to date, 152 mutations and polymorpisms have been reported inwhere V726A, M694V, M694I, M680I and E148Q are the most common mutations. In this study, MEFV allele frequencies of 136 individuals (60 from Pediatry, 76 from Internal Medicine) have been evaluated, and compared with each other. Asymptomatic individuals with FMF family history (4 from Pediatry, 6 from Internal Medicine) were excluded from the analysis. The prominent mutations indicated in the Pediatry group are V726A, M694V and M680I (G/C) and with the allele frequency of 0.06, 0.05 and 0.04 respectively while they were E148Q, M694V, M680I (G/C) in the Internal Medicine group with the allele frequency of 0.12, 0.08 and 0.04. The E148Q mutation is significantly overrepresented in the adult referrals (P = 0.02). Mutation on both alleles was observed in only 12% of cases. Overall mutation frequency was low, seen in 26.2% (66/252). However, when only diagnosed patients were analyzed it is 72.7% (16/22). It is also interesting that 63% of individuals are female that there may be sex influence on FMF phenotype.     

Erratum to: Pollen Analysis,Chemical Composition and Antibacterial Activity of Anatolian Chestnut Propolis Collected from Yıgılca Region

Biology Bulletin - An Erratum to this paper has been published: https://doi.org/10.1134/S1062359022330019     

Feeding ecology of the Kızılırmak toothcarp, <Emphasis Type="Italic">Aphanius marassantensis</Emphasis>: ontogenetic shift and seasonal diet variation

We studied the feeding ecology of an endemic cyprinodontid fish, Aphanius marassantensis (K?z?l?rmak Toothcarp), with special emphasis on seasonal and ontogenetic diet shift. The dietary composition revealed an omnivorous diet with great seasonal and ontogenetic variation. Cladocera and Calanoid Copepods (Diaptomus sp.) dominated the diet in Spring and Summer, whereas the food items of plant origin e.g. filamentous algae and diatoms were the most important components in Autumn and Winter. An ontogenetic diet shift was also demonstrated. While the feeding of juveniles was based mostly on planktonic organisms, adult individuals preferred larger prey taxa, such as Gammarus sp. and Gastropods. There was no significant sex-related variation in feeding with the exception for the volume of gut content. The investigation on the feeding strategy of A. marassantensis suggested a generalised feeding pattern with some specialised individuals. This generalist feeding habits may account for the well-established population of this species in a big reservoir under coexistence of two non-native fish species, Pseudorasbora parva and Atherina boyeri.     

The influence of environmental instability on the reproductive strategy of the critically endangered Acıgöl killifish (Aphanius transgrediens)

To investigate the variability in the reproductive tactics of Acıgöl killifish (Aphanius transgrediens), one of the most seriously threatened freshwater teleost species, this study compared its reproductive ecology in two contrasting habitats that differ substantially in terms of stability of environmental parameters, particularly salinity regime (stable vs. unstable). Fish were sampled monthly from October 2013 to September 2014 with the aim of testing whether the reproductive life-history response of fish to stable and unstable conditions differed. The reproductive effort (gonad weight) of both sexes did not differ significantly between the two habitats, but females in the unstable habitat had significantly lower fecundity and larger eggs. The relationship between fecundity and fish size was stronger in the stable habitat, whereas the relationship was quite variable and uncertain in the unstable habitat. Fish born in the unstable habitat reached their first maturity at a smaller size than those in the stable habitat. The gonado-somatic index and the duration of hydrated eggs showed that reproduction continued from February to May in both habitats; nonetheless, a second spawning event occurred during July and August in the unstable habitat, which included the reproductive contributions of YOY individuals and older generations. This study’s results suggest that A. transgrediens employs varying reproductive strategies against environmental instability in its restricted unique range. This may have further implications for the ways in which habitat-specific conservation methods are used.     

Effects of Selenium and Vitamin E,in Addıtıon to Melatonin,Against Oxidative Stress Caused by Cadmium in Rats

The present study was carried to evaluate the protective effects of melatonin alone and vitamin E with selenium combination against high dose cadmium-induced oxidative stress in rats. The control group received subcutanous physiological saline. The first study group administered cadmium chloride (CdCl₂) by subcutaneous injection of dose of 1 mg/kg. The second study group administered cadmium plus vitamin E with selenium (1 mg/kg sodium selenite with 60 mg/kg vitamin E); the third study group administered cadmium plus 10 mg/kg melatonin (MLT); the fourth study group administered CdCl₂ plus a combination of melatonin in addition to vitamin E and selenium for a month. Determination levels of plasma malondialdehyde (MDA), glutathione peroxidase (GSH-Px), blood superoxide dismutase (SOD), creatinine alanine transaminase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP), blood urea nitrogen (BUN), and urea were measured in serum. In only CdCl₂ administered group, the MDA, creatinine, ALT, AST, ALP, and urea levels in the serum were significantly higher than the control group (p < 0.05). Whereas in all other groups, this values were significantly lower than the only CdCl₂ administered group (p < 0.05). Erythrocytes GSH-Px, serum SOD activities of only CdCl₂ received group were significantly lower than the control group (p < 0.05). In conclusion, vitamin E + Se, melatonin and vitamin E, and Se, in addition to MLT combinations, had protective effects against high dose cadmium-induced oxidative damage.     

Late Devonian and early Carboniferous microfloras from the Hakkarı Province of southeastern Turkey

Late Devonian and early Carboniferous miospore and microphytoplankton assemblages are described for the first time from southeastern Turkey. The preliminary data show that assemblages recorded from the upper part of the Yiginli Formation are late Famennian in age and can be correlated with the VH, LL, LE Miospore biozones of western Europe, whilst assemblages from the overlying Köprülü Formation are considered to be middle to late Tournaisian in age and are tentatively assigned to the PC Miospore biozone of western Europe. Regional palynological correlations with other sections in North Africa and the Middle East are proposed. A new species, Verruciretusispora loboziakii is described.     

Comparison of renal lesions in cats and dogs using pathomorphological and ımmunohistochemical methods

We investigated the pathogenesis of chronic renal fibrosis in cats and dogs using immunohistochemistry. We used the avidin-biotin complex peroxidase (ABC-P) method with antibodies against transforming growth factor-β1, cytokeratin, E-cadherin, S100A4, alpha-smooth muscle actin, vimentin and nestin to determine whether tubule epithelial cells had undergone epithelial-mesenchymal transformation (EMT) that resulted in loss of epithelial cells and an increased number of mesenchymal cells. Although nephrosis was more common in dogs, nephritis was more common in cats; these pathologies developed in both kidneys. We found that EMT participated in the pathogenesis of renal fibrosis in both dogs and cats.     

Metal hyperaccumulating Brassicaceae from the ultramafic area of Yahyalı in Kayseri province,Turkey

Many of the plants found in serpentine areas are endemics and they may accumulate Ni at high concentration. High accumulation of Cr is rare, or in some views, never properly demonstrated. Generally, a very small proportion of any serpentine flora shows high accumulation of Ni, in some serpentine areas Ni accumulators are completely absent. There are approximately 570 hyperaccumulator plant species found on earth, 450 of them are Ni hyperaccumulators. A few of the Ni accumulators have potential for phytoremediation or phytomining. In the present study, 19 different Brassicaceae members growing in serpentine habitats in the district of Yahyal?, Kayseri province, Turkey viz., members of genera Aethionema, Alyssum, Arabis, Heldreichia, Hesperis, Iberis, Isatis, Microthlaspi, Odontarrhena, Pseudosempervivum and Thlaspi were investigated. Nickel concentrations in the soil and underground and aboveground parts of plants were determined by using ICP-OES. It was observed that Ni concentrations of seven taxa (Odontarrhena muralis, O. oxycarpa, Isatis cappadocica subsp. cappadocica, Microthlaspi perfoliatum, Pseudosempervivum sempervivum, Thlaspi triangulare, Thlaspi rosulare) reach the threshold criterion of 1,000 mg kg^?1 for Ni hyperaccumulation. In this study Ni concentrations in aboveground tissues of I. cappadocica subsp. cappadocica are determined as 5,587 mg kg^?1 (in dry weight). Accordingly, it is suggested that this taxon be added to the list of Ni hyperaccumulator plants.     

Archaeal Microbial Diversity of Hypersaline Lake Acıgöl,Denizli, Turkey

Archaeal diversity in Lake Ac?göl, a closed-basin, alkaline, hypersaline lake located at the northern edge of western Tourides in southwest Anatolia, was investigated using culture-independent methods. Microbial mat samples were collected from six different points. Archaeal 16S rRNA gene libraries were generated using domain specific oligonucleotide primers, and 16S rRNA gene sequences of clone libraries were analyzed phylogenetically. Denaturing gradient gel electrophoresis of 16S rRNA genes showed a variance in diversity with spatial differences. Archaeal diversity of Ac?göl is dominated by the members of family Halobacteriaceae which requires both high salt concentration and high pH for growth. Sequence analysis of archaeal 16s rRNA genes indicates the presence of the phylotypes affiliated with the genera Halorubrum, Halosimplex, Halorhabdus, Haloterrigena and Natronococcus in the analyzed samples.     

Assessment of movements and habitat use of <Emphasis Type="Italic">Salmo opimus</Emphasis> in Fırnız stream,river Ceyhan of Turkey using radio telemetry techniques

This study was carried out to provide information about movement and habitat use by an endemic Salmonid species (Salmo opimus Turan et al. Ichthyol Explor Freshw 23: 219–236, Turan et al. 2012) in F?rn?z Stream, a tributary of River Ceyhan in Turkey, using manual tracking as a radio telemetry technique. During the study, 19 of the 23 tagged trout were relocated by eight to 20 times (mean: 15 relocations per fish) in F?rn?z Stream. The time between the tracking surveys and relocations varied from 21 to 44 days (mean: 30 days) and the mean distance between relocations was 151 m (26 to 881 m). Tagged trout showed a distribution within a distance of 9350 m in F?rn?z Stream. 95% of the relocations clustered at a distance of 4500 m, while 75 and 50% of them were distributed at a distance of 1935 m and 1488 m, respectively. The linear home range of the individual ranged from 199 to 5087 m (mean 792 m), whereas mean 95% Kernel Density Home Range (KDHR), 75% KDHR, and mean core range (50% KDHR), were 632 m, 477 m and 290 m, respectively. The depths and velocities of the locations where tagged trout occurred varied from 20 to 185 cm (mean depth: 43 cm) and 11 to 240 cm/s (mean velocity: 45.9 cm/s). There was no correlation between fish size and depth and fish size and velocity. Hydropower stations and trout farms negatively affected movement of the brown trout in the stream. The fish passage in F?rn?z Hydropower Station (HPP) is inefficient due to low water mark downstream. Thus, all the obstructions that prevent fish movements must be arranged to enable fish passage in F?rn?z Stream in order to preserve the brown trout population in the stream.     

Regulation of Nrf2 and Nrf2-related proteins by ganoderma lucidum ın hepatocellular carcinoma

Molecular Biology Reports - HCC is among the most common cancer. Ganoderma lucidum (G.lucidum) has been essential in preventing and treating cancer. The Nrf2 signaling cascade is a cell protective...     

Dissemination of heavy-metal contamination in surface sediments of the Uzunçayır Dam Lake,Tunceli, Turkey

The objective of this study was to determine the heavy-metal concentrations (Cu, Pb, Zn, Ni, Mn, Fe, As, Cd, Cr, and Hg), evaluate the pollution levels, and determine the concentration of chlorophyll-a and organic carbon in the surface sediments of the Uzunçay?r Dam Lake, Tunceli, Turkey, between 2015 and 2016. In order to evaluate the effect of the pollution level in the study area, the contamination factor (CF), enrichment factor, potential ecological risk index, and pollution load index were used. The concentrations of the studied heavy metals were ordered as follows: Fe > Mn > Ni > Cr > Zn > Cu > Pb > As > Cd > Hg. The highest CF value was found for the Ni element among the studied heavy metals in the Dam Lake. Moreover, the highest CF mean value was found for the As contamination level. According to the toxicity analyses in the study area, the potential toxic effect of sediments was not at a very serious level.     

Dating and dendroprovenancing of the timbers used in Yenikapı historical jetty (İstanbul,Turkey)

In 2016, the Directorate of İstanbul Archaeology Museums unearthed an extensive jetty within the eastern portion of the Byzantine harbor excavated at Yenikapı, İstanbul. The purpose of the paper is to present the results obtained from the dating and dendroprovenancing of the wooden timbers from this historical jetty. A total of 145 oak and fir samples were collected for dating. The cutting dates of the oak timbers were determined to be from AD 1762-1763, which has also been confirmed by archaeological documents. The best statistical values (Gleichläufigkeit value 76%, TV_BP 10.0 and CDI 82) were obtained using the oak chronology for Vezneciler from the Asian side of the Bosporus, which represents construction phases dating to AD 1762-1763. The highest statistical matches for the oak tree-ring series from both Yenikapı and Vezneciler were obtained using reference chronologies from northern Greece and Kosovo. Three site chronologies from the forests of Bolu, Karabük and Kastamonu were used to date the fir samples, and the cutting date was determined to be AD 1906. The best statistical results were obtained from the site chronology for Kastamonu (Gleichläufigkeit value 72%, TV_BP 10.3 and CDI 79). Due to the significant correlation with this site chronology, the origin of the fir samples may be from the forests of Kastamonu, which is the nearest fir forest along the Black Sea. Because roads and railways were not common during this period, the fir timbers may have been transported via the Black Sea to Yenikapı located near the Marmara Coast. We can conclude from this evidence that construction near the Byzantine harbor continued to utilize imported timbers into the Ottoman period.