Ecosystem regime shifts have not affected growth and survivorship of eastern Beaufort Sea belugas

Large-scale ocean-atmosphere physical dynamics can have profound impacts on the structure and organization of marine ecosystems. These changes have been termed “regime shifts”, and five different episodes have been detected in the North Pacific Ocean, with concurrent changes also occurring in the Bering and Beaufort Seas. Belugas from the Eastern Beaufort Sea (EBS) use the Bering Sea during winter and the Beaufort Sea during summer, yet the potential effects of regime shifts on belugas have not been assessed. We investigated whether body size and survivorship of EBS belugas harvested in the Mackenzie River delta region between 1993 and 2003 have been affected by previous purported regime shifts in the North Pacific. Residuals from the relationship between body length and age were calculated and compared among belugas born between 1932 and 1989. Residual body size was not significantly related to birth year for any regime, nor to the age group individuals belonged to during any regime. The percentage deviation in number of belugas born in any given year that survived to be included in the hunt (survivorship) did not show any significant trend within or between regimes. Accounting for lags of 1–5 years did not reveal any evidence of delayed effects. Furthermore, neither population index was significantly related to changes in major climatic variables that precede regime shifts. Our results suggest that EBS beluga body size and survivorship have not been affected by the major regime shifts of the North Pacific and the adjacent Bering and Beaufort Seas. EBS belugas may have been able to modify their diet without compromising their growth and survivorship. Diet and reproductive analyses over large and small time scales can help understand the mechanisms enabling belugas to avoid significant growth and reproductive effects of past regime shifts. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Temperature and zooplankton size structure: climate control and basin‐scale comparison in the North Pacific

The global distribution of zooplankton community structure is known to follow latitudinal temperature gradients: larger species in cooler, higher latitudinal regions. However, interspecific relationships between temperature and size in zooplankton communities have not been fully examined in terms of temporal variation. To re‐examine the relationship on a temporal scale and the effects of climate control thereon, we investigated the variation in copepod size structure in the eastern and western subarctic North Pacific in 2000–2011. This report presents the first basin‐scale comparison of zooplankton community changes in the North Pacific based on a fully standardized data set obtained from the Continuous Plankton Recorder (CPR) survey. We found an increase in copepod community size (CCS) after 2006–2007 in the both regions because of the increased dominance of large cold‐water species. Sea surface temperature varied in an east–west dipole manner, showing the typical Pacific Decadal Oscillation pattern: cooling in the east and warming in the west after 2006–2007. The observed positive correlation between CCS and sea surface temperature in the western North Pacific was inconsistent with the conventional interspecific temperature–size relationship. We explained this discrepancy by the geographical shift of the upper boundary of the thermal niche, the 9°C isotherm, of large cold‐water species. In the eastern North Pacific, the boundary stretched northeast, to cover a large part of the sampling area after 2006–2007. In contrast, in the western North Pacific, the isotherm location hardly changed and the sampling area remained within its thermal niche throughout the study period, despite the warming that occurred. Our study suggests that while a climate‐induced basin‐scale cool–warm cycle can alter copepod community size and might subsequently impact the functions of the marine ecosystem in the North Pacific, the interspecific temperature–size relationship is not invariant and that understanding region‐specific processes linking climate and ecosystem is indispensable.     

Global responses of terrestrial productivity to contemporary climatic oscillations

The terrestrial biosphere is subjected to a wide range of natural climatic oscillations. Best known is the El Niño–southern oscillation (ENSO) that exerts globally extensive impacts on crops and natural vegetation. A 50-year time series of ENSO events has been analysed to determine those geographical areas that are reliably impacted by ENSO events. Most areas are impacted by changes in precipitation; however, the Pacific Northwest is warmed by El Niño events. Vegetation gross primary production (GPP) has been simulated for these areas, and tests well against independent satellite observations of the normalized difference vegetation index. Analyses of selected geographical areas indicate that changes in GPP often lead to significant changes in ecosystem structure and dynamics. The Pacific decadal oscillation (PDO) is another climatic oscillation that originates from the Pacific and exerts global impacts that are rather similar to ENSO events. However, the longer period of the PDO provided two phases in the time series with a cool phase from 1951 to 1976 and a warm phase from 1977 to 2002. It was notable that the cool phase of the PDO acted additively with cool ENSO phases to exacerbate drought in the earlier period for the southwest USA. By contrast in India, the cool phase of the PDO appears to reduce the negative impacts of warm ENSO events on crop production.     

Climatic influences on fire regimes in the northern Sierra Nevada mountains, Lake Tahoe Basin, Nevada, USA

Aim The goal of this study was to understand better the role of interannual and interdecadal climatic variation on local pre‐EuroAmerican settlement fire regimes in fire‐prone Jeffrey pine (Pinus jeffreyi Grev. & Balf.) dominated forests in the northern Sierra Nevada Mountains. Location Our study was conducted in a 6000‐ha area of contiguous mixed Jeffrey pine‐white fir (Abies concolor Gordon & Glend.) forest on the western slope of the Carson Range on the eastern shore of Lake Tahoe, Nevada. Methods Pre‐EuroAmerican settlement fire regimes (i.e. frequency, return interval, extent, season) were reconstructed in eight contiguous watersheds for a 200‐year period (1650–1850) from fire scars preserved in the annual growth rings of nineteenth century cut stumps and recently dead pre‐settlement Jeffrey pine trees. Superposed epoch analysis (SEA) and correlation analysis were used to examine relationships between tree ring‐based reconstructions of the Palmer Drought Severity Index (PDSI), Southern Oscillation Index (SOI), Pacific Decadal Oscillation (PDO) and pre‐EuroAmerican fire regimes in order to assess the influence of drought and equatorial and north Pacific teleconnections on fire occurrence and fire extent. Results For the entire period of record (1650–1850), wet conditions were characteristic of years without fires. In contrast, fire years were associated with drought. Drought intensity also influenced fire extent and the most widespread fires occurred in the driest years. Years with widespread fires were also preceded by wet conditions 3 years before the fire. Widespread fires were also associated with phase changes of the PDO, with the most widespread burns occurring when the phase changed from warm (positive) to cold (negative) conditions. Annual SOI and fire frequency or extent were not associated in our study. At decadal time scales, burning was more widespread during decades that were dryer and characterized by La Niña and negative PDO conditions. Interannual and interdecadal fire–climate relationships were not stable over time. From 1700 to 1775 there was no interannual relationship between drought, PDO, and fire frequency or extent. However, from 1775 to 1850, widespread fires were associated with dry years preceded by wet years. This period also had the strongest association between fire extent and the PDO. In contrast, fire–climate associations at interdecadal time scales were stronger in the earlier period than in the later period. The change from strong interdecadal to strong interannual climate influence was associated with a breakdown in decadal scale constructive relationships between PDO and SOI. Main conclusions Climate strongly influenced pre‐settlement pine forest fire regimes in northern Sierra Nevada. Both interannual and interdecadal climatic variation regulated conditions conducive to fire activity, and longer term changes in fire frequency and extent correspond with climate‐mediated changes observed in both the northern and southern hemispheres. The sensitivity of fire regimes to shifts in modes of climatic variability suggests that climate was a key regulator of pine forest ecosystem structure and dynamics before EuroAmerican settlement. An understanding of pre‐EuroAmerican fire–climate relationships may provide useful insights into how fire activity in contemporary forests may respond to future climatic variation.     

Climatic effects on the phenology of lake processes

Populations living in seasonal environments are exposed to systematic changes in physical conditions that restrict the growth and reproduction of many species to only a short time window of the annual cycle. Several studies have shown that climate changes over the latter part of the 20th century affected the phenology and population dynamics of single species. However, the key limitation to forecasting the effects of changing climate on ecosystems lies in understanding how it will affect interactions among species. We investigated the effects of climatic and biotic drivers on physical and biological lake processes, using a historical dataset of 40 years from Lake Washington, USA, and dynamic time‐series models to explain changes in the phenological patterns among physical and biological components of pelagic ecosystems. Long‐term climate warming and variability because of large‐scale climatic patterns like Pacific decadal oscillation (PDO) and El Niño–southern oscillation (ENSO) extended the duration of the stratification period by 25 days over the last 40 years. This change was due mainly to earlier spring stratification (16 days) and less to later stratification termination in fall (9 days). The phytoplankton spring bloom advanced roughly in parallel to stratification onset and in 2002 it occurred about 19 days earlier than it did in 1962, indicating the tight connection of spring phytoplankton growth to turbulent conditions. In contrast, the timing of the clear‐water phase showed high variability and was mainly driven by biotic factors. Among the zooplankton species, the timing of spring peaks in the rotifer Keratella advanced strongly, whereas Leptodiaptomus and Daphnia showed slight or no changes. These changes have generated a growing time lag between the spring phytoplankton peak and zooplankton peak, which can be especially critical for the cladoceran Daphnia. Water temperature, PDO, and food availability affected the timing of the spring peak in zooplankton. Overall, the impact of PDO on the phenological processes were stronger compared with ENSO. Our results highlight that climate affects physical and biological processes differently, which can interrupt energy flow among trophic levels, making ecosystem responses to climate change difficult to forecast.     

三磷酸肌醇影响钙释放的数学模型研究

此模型主要说明激动剂诱发的Ca^2 振荡实验中Ca^2 释放的若干特征。模型假设内质网（ER）上三磷酸肌醇（IP3）受体／Ca^2 通道是由相互独立的三亚基组成,每个亚基可以结合IP3或促进或报制Ca^2 释放。可看出IP3受体／Ca^2 通道随Ca^2 变化成钟形反应、随IP3的变化呈上升趋势。Ca^2 振荡的频率和振幅与Ca^2 依赖性IP3的最大泵入速率（V6)有很大关系。当Ca^2 振荡时v6变化较敏感时,Ca^2 振荡的振幅与v6有近似的线性关系。扩展的模型可分析IP3对钙依赖不同程度下的情况。     

Geographical shift of zooplankton communities and decadal dynamics of the Kuroshio–Oyashio currents in the western North Pacific

We investigated temporal and spatial variations in the zooplankton community structure in the Oyashio and Transition region of the subarctic western North Pacific from 1960 to 1999 using principal component analysis (PCA) and zooplankton samples from the historical Odate Collection. In particular, we examined the influence of Kuroshio and Oyashio decadal dynamics on geographical variations in the zooplankton community. The first principal component (PC1) closely represented the interannual variation in cold-water, large copepod species, while the second PC (PC2) represented the variation in warm-water, small copepod species. Using Rodionov's regime-shift method, we detected a significant increase in the PC score after 1976 and 1981 for PC1 and PC2, respectively. After the shift years, (1) warm-water species increased in the Transition zone, (2) the distribution center of the cold-water species shifted southward, and (3) copepod abundance and species diversity increased in the Transition zone as a result of (1) and (2). The timing of these shifts in the zooplankton community roughly coincided with the North Pacific climatic regime shift in 1976/1977. From the mid-1970s to the early 1980s, the southern boundary of the Oyashio shifted southward and increased geostrophic transport was observed in the Kuroshio, indicating spin up of the Kuroshio–Oyashio system. Change in atmospheric circulation during the 1976/1977 regime shift is thought to have caused the spin up of these currents, which subsequently affected the regional zooplankton community through advective processes.     

Features of the spatial distribution and size structure of the Pacific lamprey <Emphasis Type="Italic">Lampetra tridentata</Emphasis> in the North Pacific

Results of long-term research on the spatial and vertical distribution of the Pacific lamprey Lampetra tridentata (Richardson, 1836) (the family Petromyzontidae) in the North Pacific, and data on its size structure are submitted. It was shown, that L. tridentate reached its greatest number in the Bering Sea. The maximum concentration of the Pacific lamprey was observed all year round about Navarin Cape, in the Koryak shelf area, at the East Aleutian Islands and at the west coast of the USA, which, apparently, spoke of the increased number of its prey there. On the bottom, the Pacific lamprey was the most numerous at depths of less than 500 m, and in the pelagic, in the upper 100-meter layer. The length of individuals varied in catches from 12 up to 85 cm. The existence of several size groups may indicate that the Pacific lamprey spend several years in the sea. No correlation was revealed between the length of body and fishing depth. The correlations between body length and body weight, body length and condition factor were analyzed. Seasonal dynamics of these parameters were considered.     

Plant-parasitic Nematode Problems in the Pacific Islands

The Pacific islands have a diverse range of food and cash crops with indigenous and introduced nematode problems. The staple food crops have serious nematode pests, such as Meloidogyne spp. on sweet potato, Hirschmanniella miticausa causing corm rot of taro, and Pratylenchus coffeae and Radopholus sp. producing tuber dry rot of yams. Bananas are infested with P. coffeae or R. similis, citrus with Tylenchulus semipenetrans, rice with Aphelenchoides besseyi, and ginger with Meloidogyne spp. and R. similis. Rotylenchulus reniformis, P. zeae, P. brachyurus, and Helicotylenchus spp. are important on all of these and other crops, such as sugarcane, passion fruit, pawpaw, and cassava. Meloidogyne spp. cause serious damage to local and introduced leaf and fruit vegetables and other crops, such as tobacco, sugarcane, pawpaw, black pepper, and pyrethrum. Many other plant-parasitic genera and species, some undescribed, occur in the Pacific, and there are many islands still to be investigated.     

Concentration oscillations in three-component reaction systems

Based on the sufficient conditions for the existence of oscillation modes in the mathematical models of biological systems, simple three-component schemes of chemical reactions with oscillatory behavior including only mono- and bimolecular steps are suggested.     

脊椎动物体节形成的分节时钟调控机制

脊椎动物胚胎发育早期中胚层细胞的分节时钟控制着体节的周期性形成。体节是沿身体轴的重复结构,最终发育形成椎骨和肋骨。如果分节时钟受到干扰,体节形成就会出现缺陷,从而导致身体发育异常,最终产生脊柱先天性疾病。参与体节发育的主要模型是时钟和波前模型。中胚层分化由组合梯度系统调节,该系统涉及成纤维细胞生长因子（FGF）、Wnt/β-catenin和视黄酸（RA）信号通路。FGF信号和Wnt/β-catenin信号控制后中胚层处于未分化状态,RA信号则诱导前中胚层细胞分化导致体节成熟。因此相反的信号梯度在特定位点达到平衡。当分子振荡器从尾芽起始表达并以行波模式向前传播至信号平衡临界点时,将启动分节时钟程序,触发Mesp2等分化基因表达,表现为未成熟的前体节中胚层发育形成一对体节。随着细胞二维培养体系和时事报告系统的成熟,研究人员成功在体外将干细胞诱导分化至中胚层并实现了分节时钟的二维可视化振荡。研究表明,细胞通信中的耦合延迟可以保持相邻细胞之间同步振荡,因此导致体节边界和双侧对称形成。此后研究人员在体外重建了诱导多能干细胞的三维培养系统,再现了具有前-后（AP）轴特征的体节样结构的形成。这为解码分节时钟网络调控机理、探索体节双侧对称形成以及不同物种发育速率的代谢调控机制提供了一个宝贵的研究体系。同时为探索病理性体节缺陷发展中的失调机制创造了一个平台。     

Relationship between outer membrane protein and lipopolysaccharide profiles and serotypes of enterotoxigenic Escherichia coli isolated in Brazil

Abstract When the yeast Saccharomyces cerevisiae was grown under aerobic continuous culture conditions with a medium containing ethanol as carbon source, an autonomous sustained metabolic oscillation appeared. This oscillation was observed in rates and concentrations of various parameters such as, ethanol, oxygen uptake rate, carbon dioxide evolution rate, NaOH addition rate for pH control, acetate, and intracellular pH. No changes were observed in concentrations of stock carbohydrates. Intracellular pH changes were out of phase with oxygen uptake rate, which was reverse of the results with glucose-based oscillation. These results suggested that changes in glycolytic flux and intracellular pH were not regulating the oscillation. Analysis suggested that one of the oscillatory regulation points was located in the ethanol assimilation pathway.     

Influences of the atmospheric patterns on unstable climate-growth associations of western Mediterranean forests

Quantifying climate-growth associations is needed to evaluate how forest productivity will respond to climate change. Year-to-year fluctuations in forest productivity and radial growth are partly explained by local climatic conditions driven by large-scale atmospheric patterns. This is illustrated by Iberian forests in the western Mediterranean Basin, which are subjected to complex climatic and atmospheric influences such as Atlantic and Mediterranean cyclogenesis. The North Atlantic Oscillation (NAO) is one of the major atmospheric circulation patterns affecting Iberian forests since positive winter NAO phases lead to dry and warm conditions. The Western Mediterranean Oscillation (WeMO) may also explain Iberian forest growth in some areas since this index captures Mediterranean cyclogenesis and WeMO negative phases are linked to warm and wet spring to summer conditions. Here, we analyze the associations between atmospheric patterns, climate and tree growth and we determine if they are changing through time. We use dendrochronology to relate radial growth of four tree species (Pyrenean oak, Sweet chestnut, Maritime pine and Scots pine) growing in western Spain to climate conditions and the NAO and WeMO indices. Winter and early spring temperatures increased since the 1950s in the area whereas the negative association between winter precipitation and the NAO strengthened since then. However, mean temperature rise was particularly evident since the 1970s. Growth was reduced by dry conditions during the growing season (spring and summer), but also by cold and dry conditions during the previous autumn and winter. This explains why the NAO January and the WeMo April indices were negative to growth of three species excluding Pyrenean oak. The early 1970s reflected an inflection point in the instability of climate-growth associations in the study area. We conclude that the winter NAO is a relevant driver of forest growth in the western Iberian Peninsula forests but additional atmospheric patterns (WeMO) also affect, albeit to a minor extent, these forests.     

Hermaphroditism in two populations of Chiton articulatus (Mollusca: Polyplacophora) from the eastern tropical coast of México

Through histological analyses, this study reveals an unusually high incidence of hermaphroditism in Chiton articulatus. Specimens were sampled every 30?days between September 2010 and September 2011 at two locations (Las Brisas and Jaramillo beaches, Acapulco) on the tropical eastern Pacific coast of Mexico. At both sites, hermaphroditism was found throughout the year, although in varying proportions. Higher percentages of hermaphroditism were found during the pre-spawning summer months (Las Brisas Beach 63%, Jaramillo Beach 68%). Two different kinds of hermaphroditic gonads were found, showing a preponderance of either male or female tissues but, commonly, female tissues occupied the greatest part of the gonad cross sections. Similar to other species of polyplacophorans, there was a predominance of males, although M:F sex ratios ranged from 0.7 to 4.5: 1 at Las Brisas Beach and 0.3–8: 1 at Jaramillo Beach.     

Pseudofoenus caledonicus, a new species of hyptiogastrine wasp (Hymenoptera: Gasteruptiidae) from New Caledonia

Abstract  Pseudofoenus caledonicus sp. nov. is described from New Caledonia, and is the second member of the Hyptiogastrinae recorded from these islands. This discovery points to a more diverse fauna of Hyptiogastrinae in the south-west Pacific, which also includes P. ritae (Cheesman), from New Caledonia and Vanuatu, P. extraneus (Turner) from Fiji, and a number of species from New Guinea and New Zealand. Although a revised phylogenetic analysis does not resolve the relationships of P. caledonicus , neither the two New Caledonian species nor the south-west Pacific fauna in general are likely to be monophyletic. This fauna is discussed in terms of its relationships with Pseudofoenus spp. from mainland Australia, and possible mechanisms that have given rise to the current distribution of species.     

Nitidulidae (Coleoptera: Cucujoidea) of Vanuatu

A checklist to the Nitidulidae of Vanuatu is provided based on a combination of historical museum specimens and recent field expeditions. A dichotomous key to the described species recorded from the country is provided. Specific data per island is given where available; in addition, broader distributions are outlined for each described taxon. Several undescribed taxa are listed but not described until further work can be done in the region. A discussion of the movement of invasive Nitidulidae throughout Vanuatu is also included with an emphasis on the relationship between increases in human movement and commerce and the number of invasive species present. This discussion is extended to other islands in Vanuatu that have not yet been sampled in an attempt to predict the presence of invasive species.     

The age and origin of the Pacific islands: a geological overview

The Pacific Ocean evolved from the Panthalassic Ocean that was first formed ca 750 Ma with the rifting apart of Rodinia. By 160 Ma, the first ocean floor ascribed to the current Pacific plate was produced to the west of a spreading centre in the central Pacific, ultimately growing to become the largest oceanic plate on the Earth. The current Nazca, Cocos and Juan de Fuca (Gorda) plates were initially one plate, produced to the east of the original spreading centre before becoming split into three. The islands of the Pacific have originated as: linear chains of volcanic islands on the above plates either by mantle plume or propagating fracture origin, atolls, uplifted coralline reefs, fragments of continental crust, obducted portions of adjoining lithospheric plates and islands resulting from subduction along convergent plate margins. Out of the 11 linear volcanic chains identified, each is briefly described and its history summarized. The geology of 10 exemplar archipelagos (Japan, Izu-Bonin, Palau, Solomons, Fiji, New Caledonia, New Zealand, Society, Galápagos and Hawaii) is then discussed in detail.     

A redescription of <Emphasis Type="Italic">Cryptocentrus crocatus</Emphasis> Wongratana,a redefinition of <Emphasis Type="Italic">Myersina</Emphasis> Herre (Acanthopterygii; Gobiidae), a key to the species,and comments on relationships

Myersina is redefined, based on the presence of an elongate first dorsal fin in at least the adult males, two preopercular pores, gill membranes fused in the ventral midline and either fused to the isthmus or forming a free fold over it, cycloid scales only on the body, and midline of predorsal region scaleless. It now includes four species traditionally assigned to Cryptocentrus but here placed in Myersina ("C". crocatus, "C". filifer, "C". pretoriusi, and "C". yangii). This concept of Myersina still retains the species originally assigned to it (M. macrostoma, M. lachneri, and M. nigrivirgata). The recently described M. larsonae belongs in Stonogobiops. These two genera almost definitely form a monophyletic group. However, it is possible that the species of Stonogobiops (the monophyly of which is well supported) could be more closely related to one or more species of Myersina than either is to other Myersina species, because the monophyly of the latter genus remains uncertain. Received: March 23, 2001 / Revised: September 7, 2001 / Accepted: October 18, 2001     

An extraordinary new family of spiders from caves in the Pacific Northwest (Araneae, Trogloraptoridae, new family)

The new spider genus and species Trogloraptor marchingtoni Griswold, Audisio & Ledford is described as the type of the new family Trogloraptoridae. The oblique membranous division of the basal segment of the anterior lateral spinnerets of Trogloraptor suggests that this haplogyne family is the sister group of the other Dysderoidea (Dysderidae, Oonopidae, Orsolobidae and Segestriidae). Trogloraptor is known only from caves and old growth forest understory in the Klamath-Siskiyou region of Oregon and California.     

Interannual and regional variations in body length, weight and energy content of age-0 Pacific herring from Prince William Sound, Alaska

Age-0 Pacific herring were surveyed in October of 4 years in a large northern Gulf of Alaska estuary, to determine the range of variations in length, weight and whole body energy content (WBEC). These parameters reflect their preparedness for surviving their first winter's fast. During the surveys there were distinct regional and interannual variations in all three parameters for individual groups of herring in Prince William Sound. Likewise, with each collection there was typically a large range of size and WBEC values. The average standard length was (±S.D.) 80±13 mm (range=40–118), the mean whole body wet weight was 5·7±3·0 g (range=0·7–29·2) and the average WBEC of all age-0 herring captured, regardless of year or site (n=1471), was 5·4± 1·0 kJ g⁻¹ wet weight (range=2·4–9·4). The large range of WBEC and size indicates that age-0 herring at different capture sites were not all equally prepared for surviving their first winter.