Carbon, nitrogen, and sulfur isotope changes and hydro-geological processes in a saline lake chain

The ionic concentrations,conductivity and pH of water in the Lake Chany complex in West Siberian Russia change from the mouth to the interior of the lake. This difference is indicative of marked evaporation of lake water from the closed water body system in the dry climate of Western Siberia. The carbon isotope composition of particulate organic matter (POM, composed mainly of phytoplankton) clearly changes, along with the pH of the water, reflecting the concentration of dissolved CO₂. Carbon and nitrogen isotope signatures of Chironomus plumosus larvae, a benthic invertebrate that may feed on bulk lake sediment, systematically increase, along with those of POM and sediment organic matter (SOM), through the lake chain. Both sulfate-sulfur and nitrogen isotope compositions of the POM and SOM increase with distance from the estuary into the Lake Chany complex. Heavier sulfur and nitrogen isotope recycling from the sediment, caused by microbial sulfate reduction and denitrification, respectively, may have led to the increased sulfate-sulfur and nitrogen isotope compositions of the POM and SOM.     

Effects of hydrological forcing on the structure of a tropical estuarine food web

River flow can impact which sources of particulate organic matter (POM) fuel estuarine food webs. Here, we used stable carbon (C) and nitrogen (N) isotope analyses to compare how contributions of different POM sources (terrestrial, estuarine, and marine) to the diets of zooplankton and juvenile fishes differed between low and high river flow conditions, as well as spatially across a tropical estuary, Hilo Bay, Hawaii, USA. Diets of zooplankton and juvenile fishes were affected by river flow conditions, but the magnitude and the change in the basal resources depended on the location of the station in the estuary relative to the ocean and the river mouths. Consumers from the station most isolated from the ocean and with groundwater and overland flow inputs, utilized a combination of estuarine and terrestrial POM during both low and high river flow conditions and exhibited less variability in their basal resources than stations with direct ocean exchange. Consumers from stations in the Bay most affected by ocean exchange and river inputs utilized a combination of estuarine, terrestrial, and marine POM during low flow conditions, but shifted to marine and terrestrial POM during high river flow conditions. This shift to using terrestrial POM during high river flow conditions was substantial and up to 40% higher than values measured in other estuaries. Factors suspected to be affecting which POM source(s) consumers use in Hilo Bay are gross primary production, biological availability of exported terrestrial OM, and estuarine bacteria biomass, all of which are affected by river flow. Overall, our results suggest that Hilo Bay's food web and possibly those from other tropical estuaries are vulnerable to changes in hydrology, which may be further enhanced by global climate change.     

Oceanic fronts in the Sargasso Sea control the early life and drift of Atlantic eels

Anguillid freshwater eels show remarkable life histories. In the Atlantic, the European eel (Anguilla anguilla) and American eel (Anguilla rostrata) undertake extensive migrations to spawn in the oceanic Sargasso Sea, and subsequently the offspring drift to foraging areas in Europe and North America, first as leaf-like leptocephali larvae that later metamorphose into glass eels. Since recruitment of European and American glass eels has declined drastically during past decades, there is a strong demand for further understanding of the early, oceanic phase of their life cycle. Consequently, during a field expedition to the eel spawning sites in the Sargasso Sea, we carried out a wide range of dedicated bio-physical studies across areas of eel larval distribution. Our findings suggest a key role of oceanic frontal processes, retaining eel larvae within a zone of enhanced feeding conditions and steering their drift. The majority of the more westerly distributed American eel larvae are likely to follow a westerly/northerly drift route entrained in the Antilles/Florida Currents. European eel larvae are generally believed to initially follow the same route, but their more easterly distribution close to the eastward flowing Subtropical Counter Current indicates that these larvae could follow a shorter, eastward route towards the Azores and Europe. The findings emphasize the significance of oceanic physical–biological linkages in the life-cycle completion of Atlantic eels.     

Progress report on the eel expedition of R.V. ‘Anton Dohrn’ and R.V. ‘Friedrich Heincke’ to the Sargasso Sea 1979

Synopsis This report presents preliminary results of the 1979 Sargasso Sea expedition from February to May 1979. Information is given on horizontal and vertical distribution of eel larvae and adults, adult eel tracking and pelagic trawling. Related matters such as electrophoretic studies on anguilliform larvae, feeding of eel larvae, predation on leptocephali, occurrence of other anguilliform larvae and hydrography are mentioned.     

Use of stable isotope ratios of fish larvae as indicators to assess diets and patterns of anthropogenic nitrogen pollution in estuarine ecosystems

A stable isotope study was carried out to investigate the feeding ecology of the common goby Pomatoschistus microps larvae (Krøyer, 1838), and to assess differences in the response of planktonic food web to nutrient enrichment, in two ecosystems from the Southern European coast with different levels of historical pollution (estuaries of the Minho and Lima Rivers). At each estuary and time (July 2012, November 2012, February 2013, and June 2013), the fish larvae of two size classes (class 0: 0–10 mm; class 1: 10–15 mm), particulate organic matter (POM), and pelagic zooplankton were collected. The stable isotope mixing model SIAR revealed that, despite temporal differences in the relative proportion of prey items ingested, in both estuaries P. microps larvae feed on both planktonic-hyperbenthic food sources, predating mainly on copepods (from 34% to 60%), Mysidacea (from 16% to 28%), and brachyuran zoea (from 14% to 29%). Fish larvae size classes did not differ significantly for δ¹⁵N, and exhibited a very narrow range of the δ¹³C signature. Enriched δ¹⁵N values of all biota in the Lima estuary throughout the study period, with a marked nitrogen enrichment in colder months, are indicative of higher anthropogenic inputs of nitrogen (e.g. sewage and industrial discharges, agriculture) into this system. The δ¹⁵N values of fish larvae and other planktonic groups can be a sensitive bioindicator, because they are highly correlated with the nitrogen content of water (ammonium), indicating that this element has transferred through the planktonic food web. Enriched carbon isotope ratios were observed in warmer months, in both estuaries, and the heavier δ¹³C values in Lima are best explained by differences in the degree of marine influence. This research emphasises the utility of stable isotopes in trophic interactions studies, highlighting the relevance of the stable nitrogen isotope of zooplanktonic communities as a reliable bioindicator to detect patterns of anthropogenic nitrogen contamination in estuarine ecosystems.     

Evaluation of the larval distribution and migration of the Japanese eel in the western North Pacific

The distribution of all larval stages of the Japanese eel, Anguilla japonica, were examined using historical catch records and original data in the western North Pacific (WNP) to evaluate existing information about the larval distribution and migration of this species. A total of 148 preleptocephali, 2547 leptocephali, 6 metamorphosing larvae, and 21 glass eels were collected during 37 cruises over a 52-year period (1956?C2007). Sampling effort was spatio-temporally biased in latitude/longitude among seasons with sampling effort being concentrated near the western margin of the subtropical gyre near Taiwan in the winter season and extensive effort occurring near the spawning area to the east near the seamount chain of the West Mariana Ridge in summer during the spawning season. The distribution of preleptocephali (4.2?C8.7 mm) was limited to a narrow area around 14°N, 142°E just west of the southern part of the seamount chain, while leptocephali (7.7?C62.0 mm) were widely distributed at increasing size westward in the North Equatorial Current (NEC) to the region east of Taiwan. Metamorphosing larvae (52.7?C61.2 mm) were collected only in the area 21?C26°N, 121?C129°E to the east of Taiwan, while glass eels (51.3?C61.2 mm) occurred only within or west of the Kuroshio. These distributions suggest that leptocephali begin to metamorphose within or just east of the Kuroshio, then after completion of metamorphosis the glass eels detrain from the current and migrate inshore. The relationship between catch date and body size of leptocephali suggested that the spawning season is from April to August, but further sampling is needed to eliminate possible effects of sampling bias. This analysis is consistent with the existing hypothesis that Japanese eel larvae born near the West Mariana Ridge are transported westward in the NEC and then transfer to the Kuroshio to recruit to East Asia, although more sampling effort is needed for later stage larvae in the NEC bifurcation region to help understand the larval migration in relation to the possible impacts of ocean?Catmosphere changes.     

Habitat structure determines resource use by zooplankton in temperate lakes

While the importance of terrestrial linkages to aquatic ecosystems is well appreciated, the degree of terrestrial support of aquatic consumers remains debated. Estimates of terrestrial contributions to lake zooplankton have omitted a key food source, phytoplankton produced below the mixed layer. We used carbon and nitrogen stable isotope data from 25 Pacific Northwest lakes to assess the relative importance of particulate organic matter (POM) from the mixed layer, below the mixed layer and terrestrial detritus to zooplankton. Zooplankton and deep POM were depleted in 13C relative to mixed layer POM in lakes that can support deep primary production. A Bayesian stable isotope mixing model estimated that terrestrial detritus contributed <5% to zooplankton production, and confirms the role of lake optical and thermal properties; deep POM accounted for up to 80% of zooplankton production in the clearest lakes. These results suggest terrestrial support of lake zooplankton production is trivial.     

Sources of organic matter in Ria Formosa revealed by stable isotope analysis

The aim of this study is to assess the major sources of organic matter for macroconsumers in the Ria Formosa tidal lagoon. The C, S and N isotopic natural abundances of abundant primary producers of particulate organic matter (POM) and Mytilus galloprovincialis muscle and digestive gland were analysed. The chlorophyll a (Chl a), the suspended particulate matter (SPM) and the POM were measured along the Faro-Olhão channel. The range of variation of stable isotope values among primary producers in Ria Formosa was low suggesting difficulties in the assessment of their relative contribution to higher levels of the food web. Chl a values decreased from outer station to inner station, while SPM and POM values increased. The multiple isotope approach illustrates that POM values along the Faro-Olhão channel, may result from a mixture of upland plants, benthic plants and phytoplankton. Mussel values indicate a selective diet of benthic macrophytes and phytoplankton, with the relative proportions of each determined by the location in the channel. During winters, the upland plants may be an important source of organic matter in the inner lagoon while phytoplankton was an important source of organic matter in the outer lagoon.     

Measurements of spectral optical properties and their relation to biogeochemical variables and processes in Crater Lake,Crater Lake National Park,OR

Spectral inherent optical properties (IOPs) have been measured at Crater Lake, OR, an extremely clear sub-alpine lake. Indeed Pure water IOPs are major contributors to the total IOPs, and thus to the color of the lake. Variations in the spatial distribution of IOPs were observed in June and September 2001, and reflect biogeochemical processes in the lake. Absorption by colored dissolved organic material increases with depth and between June and September in the upper 300 m. This pattern is consistent with a net release of dissolved organic materials from primary and secondary production through the summer and its photo-oxidation near the surface. Waters fed by a tributary near the lake’s rim exhibited low levels of absorption by dissolved organic materials. Scattering is mostly dominated by organic particulate material, though inorganic material is found to enter the lake from the rim following a rain storm. Several similarities to oceanic oligotrophic regions are observed: (a) The Beam attenuation correlates well with particulate organic material (POM) and the relationship is similar to that observed in the open ocean. (b) The specific absorption of colored dissolved organic material has a value similar to that of open ocean humic material. (c) The distribution of chlorophyll with depth does not follow the distribution of particulate organic material due to photo-acclimation resulting in a subsurface pigment maximum located about 50 m below the POM maximum.     

A century of research on the larval distributions of the Atlantic eels: a re‐examination of the data

The spawning areas of the Atlantic freshwater eels were discovered about a century ago by the Danish scientist Johannes Schmidt who after years of searching found newly hatched larvae of the European eel, Anguilla anguilla, and the American eel, Anguilla rostrata, in the southern Sargasso Sea. The discovery showed that anguillid eels migrate thousands of kilometers to offshore spawning areas for reproduction, and that their larvae, called leptocephali, are transported equally long distances by ocean currents to their continental recruitment areas. The spawning sites were found to be related to oceanographic conditions several decades later by German and American surveys from 1979 to 1989 and by a Danish survey in 2007 and a German survey in 2011. All these later surveys showed that spawning occurred within a restricted latitudinal range, between temperature fronts within the Subtropical Convergence Zone of the Sargasso Sea. New data and re‐examinations of Schmidt's data confirmed his original conclusions about the two species having some overlap in spawning areas. Although there have been additional collections of leptocephali in various parts of the North Atlantic, and both otolith research and transport modelling studies have subsequently been carried out, there is still a range of unresolved questions about the routes of larval transport and durations of migration. This paper reviews the history and basic findings of surveys for anguillid leptocephali in the North Atlantic and analyses a new comprehensive database that includes 22612 A. anguilla and 9634 A. rostrata leptocephali, which provides a detailed view of the spatial and temporal distributions and size of the larvae across the Atlantic basin and in the Mediterranean Sea. The differences in distributions, maximum sizes, and growth rates of the two species of larvae are likely linked to the contrasting migration distances to their recruitment areas on each side of the basin. Anguilla rostrata leptocephali originate from a more western spawning area, grow faster, and metamorphose at smaller sizes of <70 mm than the larvae of A. anguilla, which mostly are spawned further east and can reach sizes of almost 90 mm. The larvae of A. rostrata spread west and northwest from the spawning area as they grow larger, with some being present in the western Caribbean and eastern Gulf of Mexico. Larvae of A. anguilla appear to be able to reach Europe by entering the Gulf Stream system or by being entrained into frontal countercurrents that transport them directly northeastward. The larval duration of A. anguilla is suggested to be quite variable, but gaps in sampling effort prevent firm conclusions. Although knowledge about larval behaviour is lacking, some influences of directional swimming are implicated by the temporal distributions of the largest larvae. Ocean–atmosphere changes have been hypothesized to affect the survival of the larvae and cause reduced recruitment, so even after about a century following the discovery of their spawning areas, mysteries still remain about the marine life histories of the Atlantic eels.     

Glycosaminoglycan composition of anguilliform and elopiform leptocephali

Whole-body glycosaminoglycan (GAG) composition of leptocephalous larvae was studied in eight eel (Anguilliformes) species, representing five different families (Congridae, Moringuidae, Muraenidae, Nettastomatidae and Ophichthidae) and the bonefish (Elopiformes: Albulidae: Albula vulpes ). The extracted GAGs were identified by cellulose acetate electrophoresis, using standard GAGs as a reference, and by their susceptibility to GAG-degrading enzymes (keratanase, chondroitinase ABC, chondroitinase AC and testicular hyaluronidase). The principal GAG in bonefish larvae was keratan sulphate. However, keratan sulphate was not the main GAG in any of the eel leptocephali studied, althoughit was present in small amounts in most species. The identities of the principal GAGs in eel leptocephali are still unknown, but the most likely possibilities include hyaluronic acid, chondroitin, and chrondroitin sulphate. In addition, a high degree of variability existed in the total amount of GAG that could be extracted from the different eel species and in the electrophoretic migration patterns of the extracted GAGs. Although a basic similarity is thought to exist in the body plan and developmental strategy of all leptocephali, the present results indicate that the GAG composition of the gelatinous body matrix is variable.     

Chemical characteristics of particulate organic matter from a small, mountainous river system in the Oregon Coast Range, USA

To better understand the transfer of particulate organic matter (POM) by small mountainous river systems (SMRS) to the ocean, we measured the concentration and composition of suspended particles from the Alsea River, a SMRS in the Oregon Coast Range, over a wide range of discharges that included several floods. All particulate constituents measured, including organic carbon, nitrogen and biomarkers such as lignin-derived phenols, cutin acids and amino acid-derived products, displayed concentrations that increased as a power function of discharge. In contrast to other SMRS, virtually all POM in the Alsea River samples was modern and had an average age <60?year. In spite of their similar ¹⁴C ages, marked contrasts in elemental and biomarker compositions were evident in particles collected at low and high discharges. Particles at low flows were primarily composed of organic detritus from non-vegetation sources (e.g., algal cells) whereas mineral-rich particles containing vegetation and soil-derived POM were predominant at elevated flows. Biomarker compositions of these latter particles suggest most of the POM originated from areas if the watershed with measurable hardwood contributions, which include areas affected by shallow landslides and riparian zones. We infer that the low uplift rates, lush vegetation, high net primary production and relatively thick soils that characterize the Alsea watershed are responsible for these trends. Comparison of our results with those from other systems, including the well-studied Santa Clara River (southern California), demonstrates that SMRS are part of a continuum whereby contrasts in hydroclimate, geology and vegetation lead to significant differences in the age and composition of POM exported to the ocean.     

流溪河水库颗粒有机物及浮游动物碳、氮稳定同位素特征

为了解影响流溪河水库颗粒有机物(POM)碳和氮稳定同位素(δ¹³C和δ¹⁵N)变化的主要因素,及其与浮游动物δ¹³C和δ¹⁵N之间的关系,于2008年5月至12月份对POM及浮游动物的δ¹³C和δ¹⁵N进行了研究。颗粒有机物碳稳定同位素(δ¹³C_POM)和氮稳定同位素(δ¹⁵N_POM)的季节性变化幅度分别为5.1‰和2.2‰,5月和7月份δ¹³C_POM较高,而在10月和12月份降低,这主要与降雨将大量外源有机物带入水库而引起的外源及内源有机物在POM组成上发生变化有关。δ¹⁵N_POM总体呈上升趋势,可能是由降雨引起的外源负荷、初级生产力、生物固氮等因素共同作用的结果。浮游动物的δ¹³C及δ¹⁵N总的变化趋势与POM的相似,也具有明显的季节性变化,食物来源的季节变化可能是造成其变化的主要原因。在5月份,浮游动物的食物来源为POM中δ¹³C较高的部分,也就是外源有机物,而在10月及12月份,其食物则可能主要为浮游植物。     

Seasonal and site-specific variability in terrigenous particulate organic carbon concentration in near-shore waters of Lake Biwa, Japan

Identifying sources of particulate organic matter (POM) is important for clarifying fundamental mechanisms by which lake food webs are sustained. We determined carbon and nitrogen stable isotope ratios of POM in near-shore waters of Lake Biwa, a large, meso-eutrophic lake in Japan, to estimate relative contributions of terrigenous particulate organic carbon (T-POC), plankton-derived POC (P-POC) and epilithon-derived POC (E-POC) to POC in near-shore waters. Samples were collected during different months (November, February, May and July) at 29 sites located near the mouth of tributary rivers with different discharge and catchment land use. The data revealed that POC mainly consisted of P-POC and T-POC, with relative contributions varying widely over season and among locations. E-POC generally contributed little to the near-shore POC. Path analyses revealed that the concentration of riverine POC whose isotopic signatures were similar to those of rice straws increased with a larger %paddy field area in the catchment of tributary rivers, which subsequently enhanced T-POC inputs to near-shore waters through riverine transportation. Furthermore, our results suggested that T-POC contribution was influenced, with a time lag, by wave-driven turbulence and shore topography, which appear to affect sedimentation and resuspension of T-POC.     

Stable carbon and nitrogen isotope signatures of decomposing tropical macrophytes

The Pantanal of Mato Grosso, Brazil, is a large, seasonal wetland, which exhibits high macrophyte productivity at the beginning of the rainy season, when the floodplain becomes flooded. During inundation, from December through May, there is rapid turnover of decomposing macrophyte litter, which is subsequently colonized and consumed by various organisms. In this paper, the variation in the carbon and nitrogen isotope signatures of decomposing macrophytes and detritus was determined to provide an isotopic baseline for the elucidation of higher trophic levels. Seven abundant macrophyte species, Cyperaceae sp., Pontederia lanceolata, Cabomba furcata, Salvinia auriculata, Eichhornia crassipes, Nymphaea amazonum and Paspalum repens, were exposed in mesocosm decomposition experiments lasting 21 or 100 days. Stable isotope ratios of carbon and nitrogen and the atomic C/N ratios were determined for decomposing plant material, particulate organic matter (POM), the microbial film, and aquatic invertebrate larvae. The ¹³C values for the macrophytes did not change during decomposition. However, the variability of ¹⁵N was high (range of ± 6 ) due to microbial activity. There was no consistent difference in the isotopic signatures of macrophytes and POM. C/N ratios decreased from 17 to 50 in macrophytes, to 7 to 12 in POM. The isotopic signatures and C/N ratios of the microbial film were the same as those of POM. We concluded that heterotrophic processes did not fractionate stable carbon isotopes but caused an increase in the variability of stable nitrogen ratios and a change in the C/N ratios in our experimental system. Therefore, it was not possible to distinguish fresh and senescent material or even POM when used as a food source. The ¹³C values of the aquatic larvae were closely coupled to those of the carbon source provided.     

Qualitative assessment of the diet of European eel larvae in the Sargasso Sea resolved by DNA barcoding

European eels (Anguilla anguilla) undertake spawning migrations of more than 5000 km from continental Europe and North Africa to frontal zones in the Sargasso Sea. Subsequently, the larval offspring are advected by large-scale eastward ocean currents towards continental waters. However, the Sargasso Sea is oligotrophic, with generally low plankton biomass, and the feeding biology of eel larvae has so far remained a mystery, hampering understanding of this peculiar life history. DNA barcoding of gut contents of 61 genetically identified A. anguilla larvae caught in the Sargasso Sea showed that even the smallest larvae feed on a striking variety of plankton organisms, and that gelatinous zooplankton is of fundamental dietary importance. Hence, the specific plankton composition seems essential for eel larval feeding and growth, suggesting a linkage between eel survival and regional plankton productivity. These novel insights into the prey of Atlantic eels may furthermore facilitate eel larval rearing in aquaculture, which ultimately may replace the unsustainable use of wild-caught glass eels.     

Total and hydrolizable particulate organic matter (carbohydrates, proteins and lipids) at a coastal station in Terra Nova Bay (Ross Sea, Antarctica)

We analysed quantity and quality of particulate organic matter during the austral summer 1994/1995 at a coastal station in Terra Nova Bay (Ross Sea, Antarctica). Our main aims were to investigate the origin and biochemical composition of particulate organic matter (POM), to measure its availability for consumers through the study of its digestible fraction (measured by using different enzymes separately) and to highlight the role of hydrolizable compounds in the organic matter diagenesis in the coastal waters at Terra Nova Bay. Temporal and spatial patterns of chlorophyll-a concentrations were reflected by the particulate organic carbon, nitrogen and total biopolymeric carbon concentrations, suggesting that most POM originated directly from phytoplankton. The most evident feature of POM in the coastal waters at Terra Nova Bay was the dominance of proteins (on average 57% of total biopolymeric particulate carbon), followed by carbohydrates (25%) and lipids (18%). We found that about 30% of the refractory particulate organic carbon (assumed to be present only after the complete exploitation of particulate organic nitrogen) did not originate from biopolymeric carbon (as sum of carbohydrate, protein and lipid carbon). This allows us to suggest the use of the digestible fraction of particulate biopolymeric carbon as a more accurate measure of the food availability of POM for consumers. In Terra Nova Bay coastal waters, most of the particulate protein pool was associated with large phytoplankton cells or phytodetritus. As a result, the protein pool appeared less available (i.e. less digestible) than the one present in oligotrophic waters where, conversely, most particulate organic nitrogen is sequestered into bacteria. The relative low availability of the protein pool, together with the rapid sinking of POM and the low remineralization rates of benthic heterotrophic microbes, are suggested as possible factors in determining the “inefficiency” in organic matter recycling of coastal waters at Terra Nova Bay, which behaves as a “loss type” system. Received: 17 June 1997 / Accepted 25 September 1997     

Resource partitioning between Pacific walruses and bearded seals in the Alaska Arctic and sub-Arctic

Climate-mediated changes in the phenology of Arctic sea ice and primary production may alter benthic food webs that sustain populations of Pacific walruses (Odobenus rosmarus divergens) and bearded seals (Erignathus barbatus). Interspecific resource competition could place an additional strain on ice-associated marine mammals already facing loss of sea ice habitat. Using fatty acid (FA) profiles, FA trophic markers, and FA stable carbon isotope analyses, we found that walruses and bearded seals partitioned food resources in 2009–2011. Interspecific differences in FA profiles were largely driven by variation in non-methylene FAs, which are markers of benthic invertebrate prey taxa, indicating varying consumption of specific benthic prey. We used Bayesian multi-source FA stable isotope mixing models to estimate the proportional contributions of particulate organic matter (POM) from sympagic (ice algal), pelagic, and benthic sources to these apex predators. Proportional contributions of FAs to walruses and bearded seals from benthic POM sources were high [44 (17–67)% and 62 (38–83)%, respectively] relative to other sources of POM. Walruses also obtained considerable contributions of FAs from pelagic POM sources [51 (32–73)%]. Comparison of δ¹³C values of algal FAs from walruses and bearded seals to those from benthic prey from different feeding groups from the Chukchi and Bering seas revealed that different trophic pathways sustained walruses and bearded seals. Our findings suggest that (1) resource partitioning may mitigate interspecific competition, and (2) climate change impacts on Arctic food webs may elicit species-specific responses in these high trophic level consumers.     

Stable nitrogen isotopic composition of amino acids reveals food web structure in stream ecosystems

The stable N isotopic composition of individual amino acids (SIAA) has recently been used to estimate trophic positions (TPs) of animals in several simple food chain systems. However, it is unknown whether the SIAA is applicable to more complex food web analysis. In this study we measured the SIAA of stream macroinvertebrates, fishes, and their potential food sources (periphyton and leaf litter of terrestrial C3 plants) collected from upper and lower sites in two streams having contrasting riparian landscapes. The stable N isotope ratios of glutamic acid and phenylalanine confirmed that for primary producers (periphyton and C3 litter) the TP was 1, and for primary consumers (e.g., mayfly and caddisfly larvae) it was 2. We built a two-source mixing model to estimate the relative contributions of aquatic and terrestrial sources to secondary and higher consumers (e.g., stonefly larva and fishes) prior to the TP calculation. The estimated TPs (2.3–3.5) roughly corresponded to their omnivorous and carnivorous feeding habits, respectively. We found that the SIAA method offers substantial advantages over traditional bulk method for food web analysis because it defines the food web structure based on the metabolic pathway of amino groups, and can be used to estimate food web structure under conditions where the bulk method cannot be used. Our result provides evidence that the SIAA method is applicable to the analysis of complex food webs, where heterogeneous resources are mixed.