Quenching of the fluorescence of proteins by silver nitrate

The mechanisms by which Ag⁺ may quench protein tryptophanyl fluorescence have been studied. A 1:1 Ag⁺-tryptophan complex was detected spectrophotometrically and shown to have a k_a = 6.5 × 10³ M^?1. The complex was nonfluorescent. Ag⁺ and NO₃^? each caused collisional quenching which proceeded at nearly diffusion-controlled rates in a series of indole-containing compounds. Analysis of the rates by means of Stern-Volmer plots and lifetime measurements showed also that charge and the presence of salt influence the quenching rate constants.The fluorescence of nonsulfhydryl proteins was quenched by AgNO₃ only in concentrations needed for Stern-Volmer quenching of simple indole model compounds. However, the plots for protein quenching were generally nonlinear, a reflection of the heterogeneity of tryptophanyl residues. AgNO₃ quenching increased the polarization of protein fluorescence and decreased the lifetime. Rotational relaxation times were determined from Perrin plots of reciprocal polarization vs fluorescence intensity in the presence of various amounts of AgNO₃.The fluorescence of the sulfhydryl proteins ovalbumin, yeast, and equine liver alcohol dehydrogenases was strongly quenched by AgNO₃ in parallel with the formation of Ag⁺-mercaptide bonds. The quenching of fluorescence of sulfhydryl proteins was exhibited even in 8 m urea, thus ruling out conformational change as a major basis for the quenching. It was found that Ag⁺ mercaptide bond formation was accompanied by development of an ultraviolet absorption band. The reaction of Ag⁺ with cysteine, for example, could be followed spectrophotometrically. The uv absorption of different silver mercaptides varied with the compound and pH.Since the uv absorption of Ag⁺-mercaptides extended up to 340 nm, and was also found in Ag⁺-treated sulfhydryl proteins, energy transfer from excited tryptophans seemed a reasonable basis for the observed fluorescence quenching. This possibility was confirmed by calculation of Förster critical transfer distances for a variety of donor-acceptor (Ag⁺-mercaptide) pairs.The lifetime of sulfhydryl protein fluorescence was decreased by AgNO₃, but the emission spectrum was relatively little affected, in contrast to previously reported quenching by Hg²⁺. Additional mechanisms of fluorescence alteration by Ag⁺ in proteins (e.g., “heavy atom” effect, conformational changes, enhancement of sulfhydryl quenching) are also considered.The spectral effects of Ag⁺ interaction with proteins have the following practical applications:determination of —SH groups; probe of accessibility of binding sites and tryptophan-sulfhydryl distances; determination of rotational relaxation times by Perrin plots of reciprocal polarization vs lifetime; kinetic studies of Ag⁺ interaction with proteins.     

Removal and Recovery of Toxic Silver Ion Using Deep-Sea Bacterial Generated Biogenic Manganese Oxides

Products containing silver ion (Ag⁺) are widely used, leading to a large amount of Ag⁺-containing waste. The deep-sea manganese-oxidizing bacterium Marinobacter sp. MnI7-9 efficiently oxidizes Mn²⁺ to generate biogenic Mn oxide (BMO). The potential of BMO for recovering metal ions by adsorption has been investigated for some ions but not for Ag⁺. The main aim of this study was to develop effective methods for adsorbing and recovering Ag using BMO produced by Marinobacter sp. MnI7-9. In addition, the adsorption mechanism was determined using X-ray photoelectron spectroscopy analysis, specific surface area analysis, adsorption kinetics and thermodynamics. The results showed that BMO had a higher adsorption capacity for Ag⁺ compared to the chemical synthesized MnO₂ (CMO). The isothermal absorption curves of BMO and CMO both fit the Langmuir model well and the maximum adsorption capacities at 28°C were 8.097 mmol/g and 0.787 mmol/g, for BMO and CMO, respectively. The change in enthalpy (ΔH^θ) for BMO was 59.69 kJ/mol indicating that it acts primarily by chemical adsorption. The change in free energy (ΔG^θ) for BMO was negative, which suggests that the adsorption occurs spontaneously. Ag⁺ adsorption by BMO was driven by entropy based on the positive ΔS^θ values. The Ag⁺ adsorption kinetics by BMO fit the pseudo-second order model and the apparent activation energy of E_a is 21.72 kJ/mol. X-ray photoelectron spectroscopy analysis showed that 15.29% Ag⁺ adsorbed by BMO was transferred to Ag(0) and meant that redox reaction had happened during the adsorption. Desorption using nitric acid and Na₂S completely recovered the Ag. The results show that BMO produced by strain MnI7-9 has potential for bioremediation and reutilization of Ag⁺-containing waste.     

Isolation and characterization of an alkali metal ion-sensitive NAD+-dependent glyceraldehyde 3-phosphate dehydrogenase from germinating green gram (Phaseolus aurieus).

An alkali metal ion-sensitive NAD⁺-specific glyceraldehyde 3-phosphate dehydrogenase has been purified 250-fold from germinating green gram (Phaseolus aurieus). The purified enzyme shows a single protein band on gel electrophoresis. It has been shown to be a tetrameric protein (molecular weight 160,000) made up of apparently identical monomers (subunit molecular weight 40,000). It shows an $\text{A}{}_{280}\text{A}{}_{260}$ ratio equal to 1.38, which is not changed on treatment with animal charcoal or cellulosic ion exchangers. Direct estimation shows less than 0.07 mol bound NAD⁺/mol enzyme. Green gram glyceraldehyde 3-phosphate dehydrogenase is inhibited fairly strongly at physiological concentrations of Na⁺ ions. The inhibition is stronger at higher pH and lower protein concentration. Deproteinated extract, cysteine, and reduced glutathione reverse the Na⁺ ion inhibition. The effect of deproteinated extract is attributable to the presence of some SH-containing compounds. Potassium and rubidium ions have a mild activating effect at lower concentration (below 100 mm) and are inhibitory at higher, nonphysiological, concentrations. Ammonium and lithium ions have no effect. The inhibition due to Na⁺ ions is noncompetitive with respect to NAD⁺ and phosphate ions but competitive with respect to glyceraldehyde 3-phosphate, with K_i about 60 mm. Sodium ions protect the enzyme against proteolysis with trypsin. It is suggested that Na⁺ ions and the small molecular weight SH-compounds may possibly be involved in regulation of the overall rate of glycolysis via modulation of glyceraldehyde 3-phosphate dehydrogenase activity.     

Inhibition studies of soybean (Glycine max) urease with heavy metals,sodium salts of mineral acids,boric acid,and boronic acids

Various inhibitors were tested for their inhibitory effects on soybean urease. The K_i values for boric acid, 4-bromophenylboronic acid, butylboronic acid, and phenylboronic acid were 0.20?±?0.05?mM, 0.22?±?0.04?mM, 1.50?±?0.10?mM, and 2.00?±?0.11?mM, respectively. The inhibition was competitive type with boric acid and boronic acids. Heavy metal ions including Ag⁺, Hg²⁺, and Cu²⁺ showed strong inhibition on soybean urease, with the silver ion being a potent inhibitor (IC₅₀ = 2.3?×?10^?8 mM). Time-dependent inhibition studies exhibited biphasic kinetics with all heavy metal ions. Furthermore, inhibition studies with sodium salts of mineral acids (NaF, NaCl, NaNO₃, and Na₂SO₄) showed that only F^? inhibited soybean urease significantly (IC₅₀ = 2.9?mM). Competitive type of inhibition was observed for this anion with a K_i value of 1.30?mM.     

Short-term exposure to waterborne free silver has acute effects on membrane current of Xenopus oocytes

Waterborne free silver can cause osmo- and ionoregulatory disturbances in freshwater organisms. The effects of a short-term exposure to extracellular Ag⁺ ions on membrane currents were investigated in voltage-clamped defolliculated Xenopus oocytes. At a holding potential of − 60 mV, ionic silver (1 μM Ag⁺) increased inward currents (=I_Ag) from − 8 ± 2 nA to − 665 ± 41 nA (n = 74; N = 27). I_Ag activated within 2 min of silver exposure and then rose impetuously. This current was largely reversible by washout and repeatable. I_Ag reversed around − 30 mV and rectified slightly at more positive potentials. Na⁺-free bath conditions reduced the silver-induced current to a smaller but sustained current. The response to silver was abolished by the Cl⁻ channel blockers DIDS and SITS, whereas niflumic acid strongly potentiated I_Ag. Intraoocyte injection of AgNO₃ to about 1 mM [Ag]_i strongly potentiated I_Ag. Extracellular application of either dithiothreitol (DTT), a compound known to reduce disulfide bridges, or l-cysteine abolished Ag⁺-activated increase of membrane current. In contrast, n-ethylmaleimide (NEM) which oxidizes SH-groups potentiated I_Ag. Hypoosmotic bath solution significantly increased I_Ag whereas hyperosmolar conditions attenuated I_Ag. The activation of I_Ag was largely preserved after chelation of cytosolic Ca²⁺ ions with BAPTA/AM. Taken together, these data suggest that Xenopus oocytes are sensitive to short-term exposure to waterborne Ag⁺ ions and that the elicited membrane currents result from extra- and intracellular action of Ag⁺ ions on peptide moieties at the oocyte membrane but may also affect conductances after internalization.     

A simple Chalcone‐based ratiometric chemosensor for silver ion

Herein, we report the selective binding of Ag⁺ ion by the anthracene‐based chalcone receptor 1. Receptor 1 behaves as a selective and sensitive chemosensor for the recognition of Ag⁺ over other heavy and transition metal ions without any interference and is capable of detecting the metal ion down to 0.15 × 10^?6 M. Receptor 1 on binding with Ag⁺ ions exhibits a ratiometric fluorescence enhancement, which is due to the inhibition of photoinduced electron transfer along with the intramolecular charge transfer mechanism. Copyright © 2015 John Wiley & Sons, Ltd.     

Selective detection of silver ions using mushroom-like polyaniline and gold nanoparticle nanocomposite-based electrochemical DNA sensor

A highly sensitive electrochemical DNA biosensor made of polyaniline (PANI) and gold nanoparticles (AuNPs) nanocomposite (AuNPs@PANI) has been used for the detection of trace concentration of Ag⁺. In the presence of Ag⁺, with the interaction of cytosine–Ag⁺–cytosine (C–Ag⁺–C), cytosine-rich DNA sequence immobilized onto the surface of AuNPs@PANI has a self-hybridization and then forms a duplex-like structure. The whole detection procedure of Ag⁺ based on the developed biosensor was evaluated by electrochemical impedance spectroscopy. On semi-logarithmic plots of the log Ag⁺ concentration versus peak current, the results show that the prepared biosensor can detect silver ions at a wide linear range of 0.01–100 nM (R = 0.9828) with a detection limit of 10 pM (signal/noise = 3). Moreover, the fabricated sensor exhibits good selectivity and repeatability. The detection of Ag⁺ was determined by Ag⁺ self-induced conformational change of DNA scaffold that involved only one oligonucleotide, showing its convenience and availability.     

Application of hybrid SiO2‐coated CdTe nanocrystals for sensitive sensing of Cu2+ and Ag+ ions

A new ion sensor based on hybrid SiO₂‐coated CdTe nanocrystals (NCs) was prepared and applied for sensitive sensing of Cu²⁺ and Ag⁺ for the selective quenching of photoluminescence (PL) of NCs in the presence of ions. As shown by ion detection experiments conducted in pure water rather than buffer solution, PL responses of NCs were linearly proportional to concentrations of Cu²⁺ and Ag⁺ ions < 3 and 7 uM, respectively. Much lower detection limits of 42.37 nM for Cu²⁺ and 39.40 nM for Ag⁺ were also observed. In addition, the NC quenching mechanism was discussed in terms of the characterization of static and transient optical spectra. The transfer and trapping of photoinduced charges in NCs by surface energy levels of CuS and Ag₂S clusters as well as surface defects generated by the exchange of Cu²⁺ and Ag⁺ ions with Cd²⁺ ion in NCs, resulted in PL quenching and other optical spectra changes, including steady‐state absorption and transient PL spectra. It is our hope that these results will be helpful in the future preparation of new ion sensors. Copyright © 2012 John Wiley & Sons, Ltd.     

The effect of phosphate buffer in the range of pH 5.80–8.07 on jack bean urease activity

The effect of phosphate buffer on the activity of jack bean urease was studied in the range of pH 5.80–8.07. The inhibition constants of phosphate buffer were determined by measuring initial reaction rates at each pH for a series of buffer concentrations at a series of urea concentrations. It was shown that: (1) at pH 5.80–7.49 the buffer is a competitive inhibitor of the enzyme with K_i,buffer increasing from 0.54 mM for pH 5.80 to 362 mM for pH 7.49, (2) the values of pK_i,buffer are pH-dependent exhibiting a slope of −1 at pH 5.80–6.5 and a slope of −2 at pH 6.5–7.49, (3) from pH 7.62 as the pH is further raised the competitive inhibition of urease by the buffer was not observed, (4) the true competitive inhibitor of urease is H₂PO₄⁻ ion, and (5) pH 6.5 and 7.6 correspond to the ionization constants of the active site groups of urease responsible for the inhibitory strength of H₂PO₄⁻ ion.     

Rates and Stoichiometries of Metal Ion Probes of Cysteine Residues within Ion Channels

Metal ion probes are used to assess the accessibility of cysteine side chains in polypeptides lining the conductive pathways of ion channels and thereby determine the conformations of channel states. Despite the widespread use of this approach, the chemistry of metal ion-thiol interactions has not been fully elucidated. Here, we investigate the modification of cysteine residues within a protein pore by the commonly used Ag⁺ and Cd²⁺ probes at the single-molecule level, and provide rates and stoichiometries that will be useful for the design and interpretation of accessibility experiments.     

A radiotracer probe to study metal interaction with human lactate dehyrogenase isoenzymes

The electrophilic Ag⁺ ion was found to destroy completely the enzymatic activity of lactate dehydrogenase isoenzyme LDH-1 while other transition metal ions reduced its activity in varying degrees. A radiotracer probe involving^110mAg-labeled silver ion was used to understand the mechanism of denaturation of LDH and also to determine the number of active sites, if any, for substrate binding with the enzyme. Purified LDH-1 was reacted with^110mAg-labeled silver ion and the mixture was passed through the sephadex G-75-120 gel to separate the^110mAg-LDH complex that might be formed during the reaction. The resulting elution curve revealed that a stable complex was formed. From the total radioactivity of^110mAg bound LDH, the specific activity of labeled Ag⁺ and the amount of LDH used the ratio of the number of moles of Ag⁺ reacted with 1 mol of LDH was computed. This was found to be approximately 4.0, indicating that there are four binding sites in LDH, probably one on each subunit. Kinetic studies of LDH catalysis of L-P reaction in the presence and absence of Ag⁺ ion suggest that silver ion is involved in competitive inhibition and that the interaction conforms to the lock-and-key model. The inhibition of catalysis by other metals is presumably of a noncompetitive type.This paper was presented at the Sixty-Sixth Annual Meeting of the Georgia Academy of Science, Valdosta State College, Valdosta, Georgia, April 28–29, 1989.     

Sequential potassium binding at the extracellular side of the Na,K-Pump

Ion binding at the extracellular face of the Na,K-ATPase is electrogenic and can be monitored by the styryl dye RH 421 in membrane fragments containing a high density of the Na,K-pumps. The fluorescent probe is noncovalently bound to the membrane and responds to changes of the local electric field generated by binding or release of cations inside the protein. Due to the fact that K⁺ binding from the extracellular side is an electrogenic reaction, it is possible to detect the amount of ions bound to the pump as function of the aqueous concentration. The results are in contradiction to a second order reaction, i.e., a simultaneous binding of two K⁺ ions. A mathematical model is presented to discuss the nature of the two step binding process. On the basis of this model the data allow a quantitative distinction between binding of the first and the second K⁺ ion. The temperature dependence of ion binding has been investigated. At low temperatures the apparent dissociation constants differ significantly. In the temperature range above 20°C the resulting apparent dissociation constants for both K⁺ ions merge and have values between 0.2 and 0.3 mm, which is consistent with previous experiments. The activation energy for the half saturating concentration of K⁺ is 22 kJ/mol. Additional analysis of the titration curve of K⁺ binding to the state P — E₂ by the Hill equation yields a Hill coefficient, n_Hill, of 1.33, which is in agreement with previously published data.The authors would like to thank G. Witz for technical assistance. This work has been financially supported by the Deutsche Forschungsgemeinschaft (SFB 156).     

Silver toxicity to ferrous iron and pyrite oxidation and its alleviation by yeast extract in cultures ofThiobacillus ferrooxidans

Summary Ferrous-ion oxidation byThiobacillus ferrooxidans was inhibited by 10^–6 M Ag⁺ while a slight inhibition of growth was apparent with 10^–7 M Ag⁺. The threshold toxic concentration was the seme for four different test strains. While prolonged lag phases resulted from culture exposure to Ag⁺, Fe²⁺ oxidation rates after the onset of growth showed little variation under these conditions. Yeast extract (0.02%) partially alleviated the toxicity of silver-ion by reducing the lag periods. Pyrite oxidation byT. ferrooxidans and mixed cultures of acidophiles was tested at 8.3×10^–7 to 8.3×10^–5 M Ag⁺. Strong inhibition was apparent at 8.3×10^–5 M Ag⁺ and little to no inhibition was observed at 8.3×10^–7 M Ag⁺.     

Method for overcoming the antiethylene effects of ag

A technique is described for eliminating the antiethylene effects of the Ag⁺ ion in the intact pea plant (Pisum sativum). The technique is based on the ability of the ethylene mimic, acetylene, to negate the antiethylene effect of Ag⁺, presumably through salt formation, and subsequently to induce the ethylene response.     

Residues in the Polar Loop of Subunit c in Escherichia coli ATP Synthase Function in Gating Proton Transport to the Cytoplasm

Rotary catalysis in F₁F₀ ATP synthase is powered by proton translocation through the membrane-embedded F₀ sector. Proton binding and release occur in the middle of the membrane at Asp-61 on the second transmembrane helix (TMH) of subunit c, which folds in a hairpin-like structure with two TMHs. Previously, the aqueous accessibility of Cys substitutions in the transmembrane regions of subunit c was probed by testing the inhibitory effects of Ag⁺ or Cd²⁺ on function, which revealed extensive aqueous access in the region around Asp-61 and on the half of TMH2 extending to the cytoplasm. In the current study, we surveyed the Ag⁺ and Cd²⁺ sensitivity of Cys substitutions in the loop of the helical hairpin and used a variety of assays to categorize the mechanisms by which Ag⁺ or Cd²⁺ chelation with the Cys thiolates caused inhibition. We identified two distinct metal-sensitive regions in the cytoplasmic loop where function was inhibited by different mechanisms. Metal binding to Cys substitutions in the N-terminal half of the loop resulted in an uncoupling of F₁ from F₀ with release of F₁ from the membrane. In contrast, substitutions in the C-terminal half of the loop retained membrane-bound F₁ after metal treatment. In several of these cases, inhibition was shown to be due to blockage of passive H⁺ translocation through F₀ as assayed with F₀ reconstituted into liposomes. The results suggest that the C-terminal domain of the cytoplasmic loop may function in gating H⁺ translocation to the cytoplasm.     

An explanation for the light requirement of AgNO3 to inhibit ethylene-induced abscission

The loss of the antiethylene activity of Ag⁺ on leaf abscission by incubation in the dark was investigated. When primary leaves were removed from cuttings of Vigna radiata previously sprayed with AgNO₃, dark-induced abscission of the petioles was inhibited, compared to untreated leafless controls, in the presence or absence of ethephon, an ethylene-releasing compound. Malformin did not negate inhibition of petiole abscission induced by Ag⁺. Although leaf removal restored the antiethylene activity of Ag⁺ in the dark, macerates of leaves from dark-aged cuttings did not negate the ability of Ag⁺ to inhibit petiole abscission in the dark. Abscisic acid completely abolished the ability of Ag⁺ to counteract ethephon-induced leaf abscission in the light, and almost completely abolished the Ag⁺-induced inhibition of petiole abscission from explants in the dark. It is proposed that the phytochrome requirement for the antiethylene activity of Ag⁺ on ethephon-induced leaf abscission involves prevention of the formation, accumulation, or transport of a substance in leaves in the dark which negates Ag⁺ activity. This substance may be abscisic acid or another substance with similar biological activity.     

Phosphorescence of tryptophan and proteins in the presence of silver ion

The phosphorescence of tryptophan and proteins was examined in the presence of silver nitrate in order to obtain information on the mechanisms by which Ag⁺ quenches fluorescence. The 1:1 Ag⁺-Trp complex is nonfluorescent both at 77 °C and 296 °C and has 3-fold higher phosphorescence quantum yield than the free amino acid. Silver ion causes loss of vibrational structure in the phosphorescence spectrum, and the lifetime decreases from 7.2 to 0.02. These findings are consistent with an intramolecular heavy-atom effect. A nonsulfhydryl protein, trypsinogen, shows changes in phosphorescence which are qualitatively, but not quantitatively, similar to tryptophan in the presence of silver nitrate. Yeast and liver alcohol dehydrogenases have many sulfhydryl groups and show only phosphorescence quenching on addition of Ag⁺. In this case, quenching occurs by an energy-transfer mechanism. The phosphorescence yield and spectrum of mercuripapain differed from those of papain and were consistent with a heavy atom effect due to Hg²⁺.The study was technically much facilitated by the use of aqueous snows containing 10% ($\text{v}\text{v}$) methanol. Among the advantages of such aqueous snows is the lack of gross denaturation which has in the past been a major objection to protein phosphorescence studies utilizing glasses of organic solvents.     

Thermodynamic and structural properties of the specific binding between Ag ion and C:C mismatched base pair in duplex DNA to form C–Ag–C metal-mediated base pair

Metal ion-nucleic acid interactions have attracted considerable interest for their involvement in structure formation and catalytic activity of nucleic acids. Although interactions between metal ion and mismatched base pair duplex are important to understand mechanism of gene mutations related to heavy metal ions, they have not been well-characterized. We recently found that the Ag⁺ ion stabilized a C:C mismatched base pair duplex DNA. A C–Ag–C metal-mediated base pair was supposed to be formed by the binding between the Ag⁺ ion and the C:C mismatched base pair to stabilize the duplex. Here, we examined specificity, thermodynamics and structure of possible C–Ag–C metal-mediated base pair. UV melting indicated that only the duplex with the C:C mismatched base pair, and not of the duplexes with the perfectly matched and other mismatched base pairs, was specifically stabilized on adding the Ag⁺ ion. Isothermal titration calorimetry demonstrated that the Ag⁺ ion specifically bound with the C:C base pair at 1:1 molar ratio with a binding constant of 10⁶ M⁻¹, which was significantly larger than those for nonspecific metal ion-DNA interactions. Electrospray ionization mass spectrometry also supported the specific 1:1 binding between the Ag⁺ ion and the C:C base pair. Circular dichroism spectroscopy and NMR revealed that the Ag⁺ ion may bind with the N3 positions of the C:C base pair without distorting the higher-order structure of the duplex. We conclude that the specific formation of C–Ag–C base pair with large binding affinity would provide a binding mode of metal ion-DNA interactions, similar to that of the previously reported T-Hg-T base pair. The C–Ag–C base pair may be useful not only for understanding of molecular mechanism of gene mutations related to heavy metal ions but also for wide variety of potential applications of metal-mediated base pairs in various fields, such as material, life and environmental sciences.