Molecular phylogeny of Armillaria from the Patagonian Andes

A number of species in the plant pathogen genus Armillaria are known from South America where they cause root rot disease on a wide variety of hosts. Knowledge pertaining to phylogenetic relationships of these species with those of other Armillaria species is almost non-existent. In addition, very few cultures representing these species are available, making DNA-based phylogenetic analyses impossible. The aim of this study was to characterise a collection of Armillaria isolates from the Patagonian Andes using DNA sequences and to determine their phylogenetic relationships with other Armillaria species. DNA sequences were obtained from the internal transcribed regions (ITS1, 5.8S and ITS4) and ribosomal large subunit (LSU) gene and used in phylogenetic analyses. Phylogenetic trees generated from the sequences separated the Armillaria isolates into four lineages. Lineages I and II represented A. novae-zelandiae and A. luteobubalina, respectively. Isolates belonging to A. novae-zelandiae from Malaysia, New Zealand, Australia and South America showed considerable intra-clade sub-structure. Lineages III and IV are probably distinct species and are most closely related to A. hinnulea and an unnamed species isolated from New Zealand and Kenya. This is the first comprehensive study of the phylogenetic relationships of Armillaria species from Patagonia and it provides a foundation for future research in this region.     

A monograph ofAgathis

This first study of the whole genusAgathis makes use of recent local revisions of the New Caledonian and Australian species which are all maintained. The male cone is shown to have most of the taxonomically useful variation, and this confirms the findings of two partial revisions centred on Indonesian species. Thirteen species are recognized, two of which have two subspecies. New Caledonia has five, and Australia three, sympatric species. Otherwise the species are allopatric except for a few populations of central MalesianA. dammara within the range of west MalesianA. borneensis. One of these montane populations is the distinctiveA. dammara subsp.flavescens of Malaya, formerly a full species.Two groups and three individually distinctive species can be recognized on microsporophyll characters. The larger, group B, comprizes eight species,A. australis (New Zealand),A. corbassonii, A. lanceolata andA. montana (New Caledonia),A. macrophylla (Melanesian islands and includingA. obtusa andA. vitiensis),A. atropurpurea (Australia),A. dammara (mainly central Malesia) andA. borneensis (west Malesia); both the last have long synonymies. The smaller species, group (A), comprizesA. microstachya (Australia) andA. labillardieri (west New Guinea and the Sepik basin). The individually distinctive species areA. moorei andA. ovata of New Caledonia andA. robusta of Australia with its new subspeciesnesophila, described here, of eastern New Guinea and New Britain.     

Phylogenetic Diversity of New Zealand Gelidiales as Revealed by rbcL Sequence Data

Diversity and phylogenetic relationships of New Zealand representatives of the red algal order Gelidiales have been examined using rbcL sequence data. Extensive field collections have been made from throughout the New Zealand region. Six genera have been reported previously from New Zealand (Capreolia, Gelidium, Pterocladia, Pterocladiella, Pterocladiastrum, Ptilophora). This research has revealed species with very restricted local distributions, as well as the discovery of several undescribed, cryptic taxa. The common and widespread Gelidium caulacantheum is confirmed to be more closely related to Capreolia than to other species of Gelidium. The generic concept of Capreolia, based on life history characters, will need to be modified to accommodate additional species possessing “Gelidium” life histories. A species endemic to New Zealand, Gelidium ceramoides, has been found to differ significantly from all other members of the Gelidiales and requires reclassification in another genus and order. Examination of field collections and herbarium specimens in addition to molecular sequence data have led us to conclude that specimens previously placed in the genera Ptilophora and Pterocladiastrum belong within Pterocladia lucida.     

Comparative studies on scanning electron microscopy of trophi of the genus Filinia Bory De St. Vincent (Rotifera)

Trophi of Filinia species from 16 South Island lakes and three North Island lakes of New Zealand were examined and compared with specimens from Australia, Austria, Belgium, and Turkey. Five species of Filinia (brachiata, longiseta, cf. pejleri, novaezealandiae, and terminalis) were positively identified from the New Zealand samples. Numbers of unci teeth are considered to be the most reliable features for identification within the genus. Numbers obtained from SEM for other species of Filinia (australiensis, grandis, and hofmanni) are also listed for the first time.     

A new fungal genus, Teracosphaeria, with a phialophora-like anamorph (Sordariomycetes, Ascomycota)

The new genus and species Teracosphaeria petroica is described for a perithecial ascomycete and its anamorph occurring on decayed wood collected in New Zealand. The fungus produces immersed, non-stromatic ceratosphaeria-like perithecia in nature, with hyaline, septate ascospores produced in unitunicate, non-amyloid asci. The anamorph produced in vitro is phialophora-like with lightly pigmented phialides terminating in flaring, deep collarettes that are often noticeably brown with conspicuous periclinal thickening. Phylogenetic analysis of LSU rDNA sequence data indicates that this fungus is distinct from morphologically similar fungi classified in the Chaetosphaeriales, the Trichosphaeriales or the Magnaporthaceae. It forms a monophyletic group with recently described, chaetosphaeria-like ascomycetes, such as the pyrenomycete genus Mirannulata, and shows affinity with the anamorphic species Dictyochaeta cylindrospora. The usefulness of describing anamorph genera for morphologically reduced anamorphs, when anamorph characteristics are actually part of the holomorph diagnosis, is discussed. An apparently contradictory example of the so-called Cordana and Pseudobotrytis anamorphs of Porosphaerella spp. is also discussed.     

Molecular phylogeny ofNothofagus (Nothofagaceae) based on theatpB-rbcL intergenic spacer of the chloroplast DNA

The genusNothofagus is distributed in the Southern Hemisphere from South America to Oceania, and its distribution has been assumed to be formed by continental drift by means of Gondwana break-up during the Mesozoic era. The phylogeny of the genus was elucidated by the sequences ofatpB-rbcL intergenic spacer of cpDNA for the better understanding of its evolution and biogeography. The phylogeny ofNothofagus corresponded completely to the pollen morphology which recognizes four pollen types in extant species, and agrees well with the taxonomic system of Hill and Read (1991) although there, the subgenusNothofagus showed in unresolved polytomy. The topology of the phylogenetic tree reveals that subgenusLophozonia was derived first, and thenFuscospora, Nothofagus andBrassospora. Species from South America and New Zealand were assigned to each cluster according to their pollen morphology. Therefore, diversification ofNothofagus should have already proceeded at the subgenus level before the completion of Gondwana break-up Tropical species distributed in New Guinea and New Caledonia whose evolutionary history has been controversial were revealed to be a derived group. All five New Caledonian species formed a monophyletic group with very few sequence divergences in the intergenic spacer of cpDNA, thus showing rapid adaptive radiation in the island. Evolutionary trends of several morphological traits ofNothofagus are discussed. The evolution of valve number of cupules, number of nuts per cupule, and habit of leaf-fall (evergreen or deciduous) which are diversified in the genus, were revealed as having occurred several times as the result of convergence.     

The leopardChimaera, a new species of chimaeroid fish from New Zealand (Holocephali, Chimaeriformes, Chimaeridae)

A new species ofChimaera is described from three specimens collected from deep water fishing grounds off the North Island of New Zealand at depths ranging from 327–1020 m. This species is distinguished from all other members of the genus by gray coloration with chocolate brown reticulations and spots covering the body and fins, as well as additional external features such as rounded pelvic fins, first dorsal fin with distinct white margin, preopercular and oral lateral line canals sharing a common branch, and morphology of pelvic claspers in males bifid, the distal 1/3 divided, with pale colored fleshy, distal lobes. Comparisons are made toC. monstrosa andC. owstoni, the two most similar species in the genus. this represents the first species ofChimaera to be described from New Zealand.     

Phylogeny and biogeography of Chinese and Australasian Polystichum ferns as inferred from chloroplast trnL-F and rps4-trnS sequence data

Polystichum, one of the largest genera of ferns, occurs worldwide with the greatest diversity in southwest China and adjacent regions. Although there have been studies of Chinese Polystichum on its traditional classification, geographic distributions, and even a few on its molecular systematics, its relationships to other species outside China remain little known. Here, we investigated the phylogeny and biogeography of the Polystichum species from China and Australasia. The evolutionary relationships among 42 Polystichum species found in China (29 taxa) and Australasia (13 taxa) were inferred from phylogenetic analyses of two chloroplast DNA sequence data sets: rps4-trnS and trnL-F intergenic spacers. The divergence time between Chinese and Australasian Polystichum was estimated. The results indicated that the Australasian species comprise a monophyletic group that is nested within the Chinese diversity, and that the New Zealand species are likewise a monophyletic group nested within the Australasian species. The divergence time estimates suggested that Chinese Polystichum migrated into Australasia from around 40 Ma ago, and from there to New Zealand from about 14 Ma. The diversification of the New Zealand Polystichum species began about 10 Ma. These results indicated that Polystichum probably originated in eastern Asia and migrated into Australasia: first into Australia and then into New Zealand.     

Two unusual species of <Emphasis Type="Italic">Physalacria</Emphasis> (Basidiomycetes,Agaricales) collected in New Zealand and Papua New Guinea during mycological expeditions by the National Science Museum,Tokyo

Two unusual species of Physalacria from New Zealand and Papua New Guinea are described and illustrated. Physalacria pseudotropica from South Island in New Zealand and P. tropica from Papua New Guinea are recorded for the first time.     

Cell wall polysaccharides are informative in Porphyra species taxonomy

As part of systematic studies of the genus Porphyrain New Zealand, constituent sugar analyses of cell wall polysaccharidesin situ in dry thalli were found to yield data that weretaxonomically informative. Variation in constituent sugar levels betweenspecieswas sufficient in some cases to be useful in species differentiation. Thereproductive state of thallus regions had a significant impact on the levels ofconstituent sugars, whereas storage of dried thalli for eight months had noeffect. Three epiphytic taxa currently classified as species ofPorphyra appear to be incorrectly placed within the genus,as their constituent sugars and the levels of these sugars differed markedlyfrom those of all other species examined.     

Molecular phylogeny of Phebalium (Rutaceae: Boronieae) and related genera based on the nrDNA regions ITS 1+2

Parsimony analyses of the internal transcribed spacer regions of nuclear ribosomal DNA (ITS 1 & ITS 2) for 38 taxa sampled from the Phebalium group (Rutaceae: Boronieae) and two outgroups confirm that, with the exception of Phebalium sensu stricto and Rhadinothamnus, six of the currently recognised genera within the group are monophyletic. The data indicate that Phebaliums. str. is paraphyletic with respect to Microcybe, and Rhadinothamnus is paraphyletic with respect to Chorilaena. Rhadinothamnus and Chorilaena together are the sister group to Nematolepis. Drummondita, included as an outgroup taxon, clustered within the ingroup as sister to Muiriantha and related to Asterolasia.The phylogeny suggests that the evolution of major clades within a number of these genera (e.g. Phebalium) relates to vicariance events between eastern and south-western Australia. Leionema is an eastern genus, with the most basal taxon being the morphologically distinct Leionema ellipticum from northern Queensland. Leionema also includes one species from New Zealand, but this species (as with some others) proved difficult to sequence and its phylogenetic position remains unknown. Taxonomic changes at the generic level are recommended.The authors wish to thank Paul G.Wilson, PERTH, for advice and discussion, and Paul Forster, BRI, for collecting and providing material of Leionema ellipticum. The project was supported by a Melbourne University Postgraduate Award (to BM), the Australian Biological Resources Study (ABRS), Australian Systematic Botany Society and Wolf Den (Australia) Investments.     

Conservation status of <Emphasis Type="Italic">Prodontria</Emphasis> (Coleoptera: Scarabaeidae) species in New Zealand

The genus Prodontria (Scarabaeidae: Melolonthinae), which comprises 16 described species, is an endemic southern New Zealand genus occupying lowland and coastal habitats, inter-montane basins and alpine environments. Many of the species have a limited distribution and face potential threats from habitat change and predation. The only species to be formally protected is P. lewisii Broun, commonly known as the Cromwell Chafer, which is now restricted to a 81-ha reserve in Central Otago. One undescribed lowland species might be extinct as a result of habitat modification. The current status of Prodontria species, the known distribution of species and potential threats are discussed. An erratum to this article can be found at     

The diet of pygmy sperm whales, Kogia breviceps, stranded in New Zealand: implications for conservation

The stomach contents of 27 pygmy sperm whales, Kogia breviceps, stranded on New Zealand beaches between 1991 and 2003 are reported. These individuals comprise 16 males, 10 females, and one for which no sex information is available. The diet was found to include fish and crustaceans, but is comprised primarily of cephalopods, with 0–526 lower beaks, representing an estimated maximum of c. 60 kg of cephalopod prey consumed by any one whale. Cephalopod prey is attributed to 23 species from 13 families, and is dominated by juvenile individuals of the families Histioteuthididae and Cranchiidae (adults of which usually occur at depths exceeding 400 m). Perceived threats to this whale, particularly those affecting distribution and abundance of prey species, are also discussed. These are the first data reporting the diet of this whale species in New Zealand waters. A comparison of the diet of K. breviceps is made with that of the sperm whale, Physeter macrocephalus from New Zealand waters, and with the diet of Kogia known elsewhere.     

Unknown New Zealand angiosperm assigned toCunoniaceae using sequence of the chloroplastrbcL gene

We report the first example of identification of an unknown flowering plant to family level using comparison of DNA sequences. The newly-discovered New Zealand plant had not been identified by traditional methods, but has been placed in the Gondwanic familyCunoniaceae on the basis of the sequence of its chloroplastrbcL gene. It has not flowered, but its vegetative characters are typical of the family. However, it is clearly unusual in several morphological and anatomical features and appears to match no known genus. We consider that, although it probably represents an unnamed new genus, it could possibly be a mutant dwarf form ofWeinmannia racemosa, so it is not prudent to name it at this time.     

First record of the brown lanternshark,Etmopterus unicolor, from the waters around New Zealand, and comparison with the southern lanternshark,E. granulosus

Specimens of the brown lanternshark,Etmopterus unicolor, reported here for the first time from the waters around New Zealand, were caught on bottom longlines. This study compares morphometeric and meristic characters of New Zealand and Japanese specimens ofE. unicolor and New Zealand specimens of the southern lanternshark,E. granulosus. E. unicolor andE. granulosus are clearly distinguishable by the height of the first dorsal fin, number of spiral valves, number of vertebrae, and shape of the dermal denticles and teeth.     

Characterisation of the enigmatic,endemic red algaGelidium allanii (Gelidiales) from northern New Zealand — morphology,distribution, agar chemistry

Gelidium allanii Chapman is endemic to northern New Zealand with a highly localised distribution. This species has remained little known, having been collected from only one locality for more than 40 years. We compare this species with other New Zealand members of the Gelidiaceae, in particularGelidium caulacantheum andPterocladia capillacea, presenting new data on morphology, distribution and agar chemistry to more fully characteriseG. allanii.G. allanii possesses a very distinctive, highly pyruvated agar. New Zealand records of two Australian speciesG. australe andG. asperum are examined and it is concluded that there is no evidence for their occurrence in New Zealand.Author for correspondence     

内蒙古被子植物分布新资料

报道了内蒙古1个新分布记录属:粟草属(Milium L.);2个新分布记录种:翅柄车前(Plantago komaroviiPavl.)和粟草(Milium effusum L.)。     

Beauveria caledonica is a naturally occurring pathogen of forest beetles

In New Zealand, two introduced scolytid beetles, Hylastes ater and Hylurgus ligniperda (Curculionidae: Scolytinae) are pests in pine plantations. Investigation of the naturally occurring pathogens of these exotic pests revealed that both are attacked by Beauveria caledonica, a species originally isolated and described from soil in Scotland. The isolates in New Zealand were identical in morphology and conserved DNA region (rDNA, elongation factor α) sequence to isolates held in the USDA-ARS insect pathogens culture collection. In bioassay, the B. caledonica isolates were highly pathogenic to adults of H. ligniperda and larvae of Tenebrio molitor. Sporulation was observed on cadavers, confirming the species can utilise the cadavers. As both species were likely to have been introduced to New Zealand from Europe, a search was made for B. caledonica in the northern UK and Ireland. The fungus was found as a naturally-occurring pathogen of the weevil pest, Hylobius abietis (Curculionidae: Scolytinae), developing in spruce and other beetles in forests in both regions.