Temporary forest pools: can we see the water for the trees?

Temporary waters, in general, are fascinating habitats in which to study the properties of species adapted to living in highly variable environments. Species display a remarkable array of strategies for dealing with the periodic loss of their primary medium that sets them apart from the inhabitants of permanent water bodies. Survival of individuals typically depends on exceptional physiological tolerance or effective migrational abilities, and communities have their own, distinctive hallmarks. This paper will broadly overview the biology of temporary ponds, but will emphasize those in temperate forests. In particular, links will be sought between aquatic community properties, the nature of the riparian vegetation, and forestry practices. Quite apart from their inherent biological interest, temporary waters are now in the limelight both from a conservation perspective, as these habitats come more into conflict with human activities, and a health-control perspective, as breeding habitats for vectors of arboviruses. Traditionally, many temporary waters, be they pools, streams or wetlands, have been considered to be ȁ8wastedȁ9 areas of land, potentially convertible to agriculture/silviculture once drained. In reality, they are natural features of the global landscape representing distinct and unique habitats for many species – some that are found nowhere else, others that reach their maximum abundance there. To be effective, conservation measures must preserve the full, hydroseral range of wetland types.     

Have we been successful? Monitoring horizontal forest complexity for forest restoration projects

Forest management today often seeks to restore ecological integrity and enhance human well‐being by increasing forest complexity, resilience, and functionality. However, effective and financially expedient monitoring of forest complexity is challenging. In this study, we developed a practical and inexpensive technique to measure horizontal forest complexity. This monitoring method uses intuitively understandable data (imagery) and facilitates stakeholder participation in the adaptive management process within collaborative projects. We used this technique to determine if current restoration projects are successfully achieving their spatial restoration goals. We focused on the Colorado Front Range Landscape Restoration Initiative (CFRLRI) as a representative of the typical collaborative restoration projects underway in formerly fire‐dependent dry conifer forests. The developed monitoring method is practical and cost‐effective by using free aerial imagery to map, quantify, and analyze the distribution of canopy cover pre‐ and post‐treatment. We found the CFRLRI has successfully reduced canopy cover (from 44 to 26% on average) and increased some aspects of horizontal forest complexity. The application of these monitoring techniques has allowed the CFRLRI collaborative group to objectively quantify changes to horizontal forest complexity, and has facilitated stakeholder communication about forest spatial patterns. These methods could be adapted for use by other similar forest restoration projects around the world by utilizing increasingly available satellite or aerial imagery.     

Have you ever seen the rain? Stories of trees and the people who study them

You’ve heard of Chernobyl and the fall of Rome. Perhaps you know the intricacies of Meso-American depopulation or radiocarbon dating. But do you know how they are all related? Valerie Trouet certainly does, and she explains their intimate connections with tree-ring science in Tree Story.     

Have we overstated the tropical biodiversity crisis?

Tropical forests are the most biologically diverse and ecologically complex of terrestrial ecosystems, and are disappearing at alarming rates. It has long been suggested that rapid forest loss and degradation in the tropics, if unabated, could ultimately precipitate a wave of species extinctions, perhaps comparable to mass extinction events in the geological history of the Earth. However, a vigorous debate has erupted following a study by Wright and Muller-Landau that challenges the notion of large-scale tropical extinctions, at least over the next century. Here, I summarize this controversy and describe how the debate is stimulating a serious examination of the causes and biological consequences of future tropical deforestation.     

Have we overestimated the benefit of human(ized) antibodies?

The infusion of animal-derived antibodies has been known for some time to trigger the generation of antibodies directed at the foreign protein as well as adverse events including cytokine release syndrome. These immunological phenomena drove the development of humanized and fully human monoclonal antibodies. The ability to generate human(ized) antibodies has been both a blessing and a curse. While incremental gains in the clinical efficacy and safety for some agents have been realized, a positive effect has not been observed for all human(ized) antibodies. Many human(ized) antibodies trigger the development of anti-drug antibody responses and infusion reactions. The current belief that antibodies need to be human(ized) to have enhanced therapeutic utility may slow the development of novel animal-derived monoclonal antibody therapeutics for use in clinical indications. In the case of murine antibodies, greater than 20% induce tolerable/negligible immunogenicity, suggesting that in these cases humanization may not offer significant gains in therapeutic utility. Furthermore, humanization of some murine antibodies may reduce their clinical effectiveness. The available data suggest that the utility of human(ized) antibodies needs to be evaluated on a case-by-case basis, taking a cost-benefit approach, taking both biochemical characteristics and the targeted therapeutic indication into account.     

Have we overestimated the benefit of human(ized) antibodies?

The infusion of animal-derived antibodies has been known for some time to trigger the generation of antibodies directed at the foreign protein as well as adverse events including cytokine release syndrome. These immunological phenomena drove the development of humanized and fully human monoclonal antibodies. The ability to generate human(ized) antibodies has been both a blessing and a curse. While incremental gains in the clinical efficacy and safety for some agents have been realized, a positive effect has not been observed for all human(ized) antibodies. Many human(ized) antibodies trigger the development of anti-drug antibody responses and infusion reactions. The current belief that antibodies need to be human(ized) to have enhanced therapeutic utility may slow the development of novel animal-derived monoclonal antibody therapeutics for use in clinical indications. In the case of murine antibodies, greater than 20% induce tolerable/negligible immunogenicity, suggesting that in these cases humanization may not offer significant gains in therapeutic utility. Furthermore, humanization of some murine antibodies may reduce their clinical effectiveness. The available data suggest that the utility of human(ized) antibodies needs to be evaluated on a case-by-case basis, taking a cost-benefit approach, taking both biochemical characteristics and the targeted therapeutic indication into account.Key words: immunogenicity, human anti-mouse antibody, cytokine release syndrome     

Have we been underestimating the effects of ocean acidification in zooplankton?

Understanding how copepods may respond to ocean acidification (OA) is critical for risk assessments of ocean ecology and biogeochemistry. The perception that copepods are insensitive to OA is largely based on experiments with adult females. Their apparent resilience to increased carbon dioxide (pCO₂) concentrations has supported the view that copepods are ‘winners’ under OA. Here, we show that this conclusion is not robust, that sensitivity across different life stages is significantly misrepresented by studies solely using adult females. Stage‐specific responses to pCO₂ (385–6000 μatm) were studied across different life stages of a calanoid copepod, monitoring for lethal and sublethal responses. Mortality rates varied significantly across the different life stages, with nauplii showing the highest lethal effects; nauplii mortality rates increased threefold when pCO₂ concentrations reached 1000 μatm (year 2100 scenario) with LC₅₀ at 1084 μatm pCO₂. In comparison, eggs, early copepodite stages, and adult males and females were not affected lethally until pCO₂ concentrations ≥3000 μatm. Adverse effects on reproduction were found, with >35% decline in nauplii recruitment at 1000 μatm pCO₂. This suppression of reproductive scope, coupled with the decreased survival of early stage progeny at this pCO₂ concentration, has clear potential to damage population growth dynamics in this species. The disparity in responses seen across the different developmental stages emphasizes the need for a holistic life‐cycle approach to make species‐level projections to climate change. Significant misrepresentation and error propagation can develop from studies which attempt to project outcomes to future OA conditions solely based on single life history stage exposures.     

Do vine species in neotropical forests see the forest or the trees?

Questions: Is the occurrence of vine species in neotropical rain forests primarily determined by properties of the forest (environmental factors), by properties of the trees (tree species or tree size) or are vines randomly distributed? Location: Maya Biosphere Reserve, Guatemala. Methods: In five 1‐ha plots that span variation from unlogged forest to forest impacted by recurrent human disturbance we recorded the presence of all climbing vine species on every tree. The presence of all free standing vine species and 11 environmental variables were recorded in 100‐m² subplots. The relationship of host tree diameter and host tree identity on single tree vine species richness was investigated by GLM modelling. Partial redundancy analyses were used to partition the variation in vine species composition on two sources: environmental factors and tree species identity. Results: Single tree vine richness increased with increasing host tree DBH and differed significantly among host species. For climbing vines, the ratio of variation in subplot presence explained by tree species and by environmental variables was ca. 4:1 (in the most disturbed logged plots slightly lower), for free standing vines this ratio varied from 1:2 in the most disturbed logged plots to 9:1 in reserve plots, while a ratio of ca. 1:1 was found for all plots analysed together. Conclusion: Different tree species have different probabilities of being infested by vines. Vines see both the forest and the trees; the environment is more important in earlier developmental stages, properties of individual trees become more important from the time vines start to climb.     

Have we been hebbing down the wrong path?

In this issue of Neuron, Stepanyants, Hof, and Chklovskii derive a simple mathematical formula to calculate, from measurable anatomical parameters, the capacity for neuronal wiring plasticity involving local synaptic rearrangements. Their work provides a deeper understanding of the potential contribution of structural plasticity to learning and memory.     

Primary aldosteronism: are we missing the wood for the trees?

The prevalence of primary aldosteronism (PA) is around 10% of hypertensives, with markedly increased risk of cardiovascular damage compared with age-, sex- and BP-matched essential hypertension (EH). Currently, if hypertension is present in 20% of the population, PA will account for 2%; of these PA patients only 1% are ever screened, let alone diagnosed and treated, and the remaining 99% suboptimally treated, if at all. Mineralocorticoid receptor (MR) antagonists are effective in lowering BP, uniquely vasoprotective and safe when titrated to effect in EH. In resistant hypertension (BP elevated despite 3 or more conventional agents, including a diuretic), which constitutes 20-30% of EH, addition of a low dose MR antagonist reproducibly produces BP lowering of 20-30 mm Hg. Two thirds of PA is unilateral, and normally treated by MR antagonists; in unilateral PA surgery is recommended, but there are also studies reporting MR antagonist therapy to be noninferior over the longer term. There thus seems to be a very strong case for including a low dose MR antagonist in first-line therapy for new hypertension, given its utility and safety across EH, its particular efficacy in resistant hypertension, and its specific benefits for the 99% of subjects with occult PA. We do not have the resources to diagnose PA, but we do have the wherewithal to treat it.     

The genomics of local adaptation in trees: are we out of the woods yet?

There is substantial interest in uncovering the genetic basis of the traits underlying adaptive responses in tree species, as this information will ultimately aid conservation and industrial endeavors across populations, generations, and environments. Fundamentally, the characterization of such genetic bases is within the context of a genetic architecture, which describes the mutlidimensional relationship between genotype and phenotype through the identification of causative variants, their relative location within a genome, expression, pleiotropic effect, environmental influence, and degree of dominance, epistasis, and additivity. Here, we review theory related to polygenic local adaptation and contextualize these expectations with methods often used to uncover the genetic basis of traits important to tree conservation and industry. A broad literature survey suggests that most tree traits generally exhibit considerable heritability, that underlying quantitative genetic variation (Q_ST) is structured more so across populations than neutral expectations (F_ST) in 69% of comparisons across the literature, and that single-locus associations often exhibit small estimated per-locus effects. Together, these results suggest differential selection across populations often acts on tree phenotypes underlain by polygenic architectures consisting of numerous small to moderate effect loci. Using this synthesis, we highlight the limits of using solely single-locus approaches to describe underlying genetic architectures and close by addressing hurdles and promising alternatives towards such goals, remark upon the current state of tree genomics, and identify future directions for this field. Importantly, we argue, the success of future endeavors should not be predicated on the shortcomings of past studies and will instead be dependent upon the application of theory to empiricism, standardized reporting, centralized open-access databases, and continual input and review of the community’s research.     

Can we effectively stop the expansion of trees on wetlands? Results of a birch removal experiment

The main aim of this study was to determine the effectiveness of removing invasive downy birch in non-forest peatland applying a single cut. We tested whether the removal of birch was positively related to the height of cutting, season of the year and age of the trees. Our study showed that birch trees cut at the higher tested height exhibited a lower survival rate than those cut below or just above the ground level. Furthermore, the winter cut produced more non-sprouting stumps than those recorded after the cut performed in autumn. In our opinion, winter cutting at breast height is the best management strategy for downy birch control. However, we suppose that the effective elimination of birch by applying a single cut is not possible, and the treatment should be repeated in subsequent years or boosted by additional treatments.     

Have we underestimated the importance of humans in the biogeography of free‐living terrestrial microorganisms?

The role of humans in the global dispersal of free‐living terrestrial microorganisms has received surprisingly little attention in the literature, compared with the frequent discussions of human dispersal for aquatic microbes. Here I argue that this area needs more study, using examples from the ecology of testate amoebae to illustrate the nature of the problem. The techniques of molecular ecology now make these ideas open to investigation in a way that would have been difficult in the past, and, in the case of testate amoebae, palaeoecological approaches may also be valuable.     

Do large forest trees tend towards high species mingling?

Effects caused by human management and natural disturbances as well as by ecological mechanisms such as those described, for example, by the Janzen-Connell and the herd immunity hypotheses play an important role in maintaining species diversity. These processes are often accompanied by local size-hierarchy effects and as a likely consequence of them we hypothesised that large plants generally have a tendency to show high species mingling, where plants and their nearest neighbours are heterospecific. To carry out a first benchmark study in forests from different parts of Europe, Africa and North America, we selected spatial data from twelve forest ecosystems and analysed the mingling situation based on an index of spatial species mingling. Using stem diameter at breast height and stem diameter differentiation among the nearest neighbours as explanatory variables we then applied logistic regression to explain mingling probability. Overall we found significant support for the expectation that large trees and trees growing at low local densities often (75% of all analysed forest stands) have indeed a tendency towards high species mingling. This supports our expectation that the tendency of larger trees towards high species mingling generally is either a consequence of disturbances/forest management or of the aforementioned ecological processes, although a few forest stands also deviated from the expected pattern. We also found that size differentiation and species mingling are strongly related in local neighbourhoods. Thus the results of our study strongly support the view that local species richness promotes local size hierarchy irrespective of climate zone. This leads to situations where in local neighbourhoods with large size diversity there is also high mingling and vice versa. This allows conservation to focus on maintaining or improving one diversity aspect, e.g. size diversity, whilst obtaining the other, e.g. species mingling, as a by-product.     

Methanosaeta,the forgotten methanogen?

Although the aceticlastic methanoarchaea Methanosarcina and Methanosaeta employ different enzymes to catalyze the first step of aceticlastic methanogenesis, it has long been assumed that the remainder of the pathway was the same. Analysis of the recently completed genome sequence of Methanosaeta thermophila confirms that the majority of core steps of the pathway are similar in both genera, but striking differences have been discovered in electron transfer and energy conservation. In addition, the presence of genes encoding enzymes for the CO(2) reduction pathway in the Msa. thermophila genome suggests the possibility that Methanosaeta might be more metabolically diverse than previously thought. Thus, genome analysis of Msa. thermophila presents new research avenues for this forgotten methanogen and reminds us of the questions that still remain unanswered about aceticlastic methanogenesis in both Methanosaeta and Methanosarcina.     

Tissue culture of forest trees—Clonal propagation of mature trees of Eucalyptus citriodora Hook,by tissue culture

Multiple shoots were obtained from terminal buds of 20-year-old trees of Eucalyptus citriodora Hook on Murashige and Skoog's medium supplemented with calcium pantothenate, biotin, benzylaminopurine and kinetin. Rooting could be induced by naphthalene-acetic acid in shoot cultures only after they had undergone three subcultures. Incubation at 15°C with continuous illumination followed by growth in agitated liquid cultures was essential for inducing shoot development in the primary terminal buds. These treatments were not necessary in later subcultures or with explants from seedlings obtained from seeds. Fifteen subcultures have so far been carried out and healthy viable plantlets obtained in each subculture. It is estimated that over 100 000 plants can be obtained by this method in a year from a single bud of mature Eucalyptus citriodora trees.     

Antiplasmin: the forgotten serpin?

Much of the basic biochemistry of antiplasmin was described more than 20 years ago and yet it remains an enigmatic member of the serine protease inhibitor (serpin) family. It possesses all of the characteristics of other inhibitory serpins but in addition it has unique N- and C-terminal extensions which significantly modify its activities. The N-terminus serves as a substrate for Factor XIIIa leading to crosslinking and incorporation of antiplasmin into a clot as it is formed. Although free antiplasmin is an excellent inhibitor of plasmin, the fibrin bound form of the serpin appears to be the major regulator of clot lysis. The C-terminal portion of antiplasmin is highly conserved between species and contains several charged amino acids including four lysines with one of these at the C-terminus. This portion of the molecule mediates the initial interaction with plasmin and is a key component of antiplasmin's rapid and efficient inhibitory mechanism. Studies of mice with targeted deletion of antiplasmin have confirmed its importance as a major regulator of fibrinolysis and re-emphasized its value as a potential therapeutic target.     

Have we found the tip link,transduction channel,and gating spring of the hair cell?

Recent reports have offered candidates for key components of the apparatus used for mechanotransduction in hair cells. TRPA1 and cadherin 23 have been proposed to be the transduction channel and component of the tip link, respectively; moreover, ankyrin repeats in TRPA1 have been proposed to be the gating spring. Although these are excellent candidates for the three components, definitive experiments supporting each identification have yet to be performed.