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1.
N-terminal Nα-[13C]monomethylamino derivatives for the N-terminal serine and leucine residues of glycophorins AM and AN, respectively, were obtained by reductively 13C-methylating homozygous human erythrocytes (MM, NN). The 13C-labeled glycophorins, AM and AN, were then isolated. A unique structural state was observed in solution reductively 13C-methylated glycophorin AM that was not observed in glycophorin AM derived from 13C-methylated erythrocytes. We attribute this state to the fact that some of the glycophorin AM forms a head-to-head dimer when subjected to reductive 13C-methylation in aqueous solution. The 13C chemical shift data and pH titration data for the N-terminal [13C]dimethylamino and [13C]monomethylamino groups of glycophorin AM and AN derived from reductively 13C-methylated erythrocytes were in agreement with the chemical shift and titration data previously obtained for the N-terminal [13C]dimethylamino groups of solution reductively 13C-methylated glycophorins and related glycopeptides and peptides and N-terminal [13C]monomethylamino groups of related glycopeptides and peptides.  相似文献   

2.
The 13C resonances of Nα,N-[13C]dimethylserine of partially 13C reductively methylated glycophorin AM were monitored as a function of pH at 45°C. For comparison, limited data are also presented for the pH dependence of the 13C resonances of Nα,N- [13C]dimethylserine of fully 13C reductively methylated deglycosylated glycophorin AM. The ‘major’ component of Nα,N- [13C]dimethylserine of glycophorin AM did not titrate, whereas the ‘minor’ component titrated with a pKa of 7.80 (Hill coefficient of 0.95). Similar results are also indicated for the Nα,N- [13C]dimethylserine resonances of 13C reductively methylated deglycosylated glycophorin AM.  相似文献   

3.
Significant resolution improvement in 13C,13C-TOCSY spectra of uniformly deuterated and 13C, 15N-labeled protein and 13C,15N-labeled RNA samples is achieved by introduction of multiple-band-selective 13C-homodecoupling applied simultaneously with 1H- or 2H- and 15N-decoupling at all stages of multidimensional experiments including signal acquisition period. The application of single, double or triple band-selective 13C-decoupling in 2D-[13C,13C]-TOCSY experiments during acquisition strongly simplifies the homonuclear splitting pattern. The technical aspects of complex multiple-band homonuclear decoupling and hardware requirements are discussed. The use of this technique (i) facilitates the resonance assignment process as it reduces signal overlap in homonuclear 13C-spectra and (ii) possibly improves the signal-to-noise ratio through multiplet collapse. It can be applied in any 13C-detected experiment.  相似文献   

4.
Glutamine is the first major organic product of assimilation of 13NH4+ by tobacco (Nicotiana tabacum L. cv. Xanthi) cells cultured on nitrate, urea, or ammonium succinate as the sole source of nitrogen, and of 13NO3 by tobacco cells cultured on nitrate. The percentage of organic 13N in glutamate, and subsequently, alanine, increases with increasing periods of assimilation. 13NO3, used for the first time in a study of assimilation of nitrogen, was purified by new preparative techniques. During pulse-chase experiments, there is a decrease in the percentage of 13N in glutamine, and a concomitant increase in the percentage of 13N in glutamate and alanine. Methionine sulfoximine inhibits the incorporation of 13N from 13NH4+ into glutamine more extensively than it inhibits the incorporation of 13N into glutamate, with cells grown on any of the three sources of nitrogen. Azaserine inhibits glutamate synthesis extensively when 13NH4+ is fed to cells cultured on nitrate. These results indicate that the major route for assimilation of 13NH4+ is the glutamine synthetase-glutamate synthase pathway, and that glutamate dehydrogenase also plays a role, but a minor one. Methionine sulfoximine inhibits the incorporation of 13N from 13NO3 into glutamate more strongly than it inhibits the incorporation of 13N into glutamine, suggesting that the assimilation of 13NH4+ derived from 13NO3 may be mediated solely by the glutamine synthetase-glutamate synthase pathway.  相似文献   

5.
A simple spectroscopic filtering technique is presented that may aid the assignment of 13C and 15N resonances of methyl-containing amino-acids in solid-state magic-angle spinning (MAS) NMR. A filtering block that selects methyl resonances is introduced in two-dimensional (2D) 13C-homonuclear and 15N–13C heteronuclear correlation experiments. The 2D 13C–13C correlation spectra are recorded with the methyl filter implemented prior to a 13C–13C mixing step. It is shown that these methyl-filtered 13C-homonuclear correlation spectra are instrumental in the assignment of Cδ resonances of leucines by suppression of Cγ–Cδ cross peaks. Further, a methyl filter is implemented prior to a 15N–13C transferred-echo double resonance (TEDOR) exchange scheme to obtain 2D 15N–13C heteronuclear correlation spectra. These experiments provide correlations between methyl groups and backbone amides. Some of the observed sequential 15N–13C correlations form the basis for initial sequence-specific assignments of backbone signals of the outer-membrane protein G.  相似文献   

6.
Dmitrii Vavilin 《BBA》2007,1767(7):920-929
Chlorophyll synthesis and degradation were analyzed in the cyanobacterium Synechocystis sp. PCC 6803 by incubating cells in the presence of 13C-labeled glucose or 15N-containing salts. Upon mass spectral analysis of chlorophyll isolated from cells grown in the presence of 13C-glucose for different time periods, four chlorophyll pools were detected that differed markedly in the amount of 13C incorporated into the porphyrin (Por) and phytol (Phy) moieties of the molecule. These four pools represent (i) unlabeled chlorophyll (12Por12Phy), (ii) 13C-labeled chlorophyll (13Por13Phy), and (iii, iv) chlorophyll, in which either the porphyrin or the phytol moiety was 13C-labeled, whereas the other constituent of the molecule remained unlabeled (13Por12Phy and 12Por13Phy). The kinetics of 12Por12Phy disappearance, presumably due to chlorophyll de-esterification, and of 13Por12Phy, 12Por13Phy, and 13Por13Phy accumulation due to chlorophyll synthesis provided evidence for continuous chlorophyll turnover in Synechocystis cells. The loss of 12Por12Phy was three-fold faster in a photosystem I-less strain than in a photosystem II-less strain and was accelerated in wild-type cells upon exposure to strong light. These data suggest that most chlorophyll appears to be de-esterified in Synechocystis upon dissociation and repair of damaged photosystem II. A substantial part of chlorophyllide and phytol released upon the de-esterification of chlorophyll can be recycled for the biosynthesis of new chlorophyll molecules contributing to the formation of 13Por12Phy and 12Por13Phy chlorophyll pools. The phytol kinase, Slr1652, plays a significant but not absolutely critical role in this recycling process.  相似文献   

7.
After exposure to [U-13C3]glycerol, the liver produces primarily [1,2,3-13C3]- and [4,5,6-13C3]glucose in equal proportions through gluconeogenesis from the level of trioses. Other 13C-labeling patterns occur as a consequence of alternative pathways for glucose production. The pentose phosphate pathway (PPP), metabolism in the citric acid cycle, incomplete equilibration by triose phosphate isomerase, or the transaldolase reaction all interact to produce complex 13C-labeling patterns in exported glucose. Here, we investigated 13C labeling in plasma glucose in rats given [U-13C3]glycerol under various nutritional conditions. Blood was drawn at multiple time points to extract glucose for NMR analysis. Because the transaldolase reaction and incomplete equilibrium by triose phosphate isomerase cannot break a 13C-13C bond within the trioses contributing to glucose, the appearance of [1,2-13C2]-, [2,3-13C2]-, [5,6-13C2]-, and [4,5-13C2]glucose provides direct evidence for metabolism of glycerol in the citric acid cycle or the PPP but not an influence of either triose phosphate isomerase or the transaldolase reaction. In all animals, [1,2-13C2]glucose/[2,3-13C2]glucose was significantly greater than [5,6-13C2]glucose/[4,5-13C2]glucose, a relationship that can only arise from gluconeogenesis followed by passage of substrates through the PPP. In summary, the hepatic PPP in vivo can be detected by 13C distribution in blood glucose after [U-13C3]glycerol administration.  相似文献   

8.
A new method which utilizes 13C-13C coupling for structural and biosynthetic studies on acetate-derived metabolites is described. The 13C-NMR spectra of dihydrolatumcidins separately labeled with 13CH313C02Na and with a 1: 1 mixture of 13CH3CO2-Na and CH313C02-Na gave enough information to establish its structure.  相似文献   

9.
We designed and synthesized a new class of 13C-labeled NMR probe, 13C-IQ-Gd, to monitor one-electron reductions by cytochrome:P450 (CYP450) reductase under hypoxic conditions. 13C-IQ-Gd consisted of a Gd3+-diethylene triamine pentaacetic acid (DTPA) complex unit and an indolequinone (13C-IQ) unit bearing a 13C-labeled methoxy group. The 13C NMR signal of 13C-IQ-Gd was suppressed because of the intramolecular paramagnetic effect of Gd3+, whereas enzymatic reduction mediated by CYP450 reductase under hypoxic conditions yielded an intensed 13C NMR signal due to enzymatic activation of the IQ unit followed by release of the DTPA-Gd unit from 13C-IQ-Gd. This 13C NMR spectral change allowed the monitoring of CYP450 reducatase-mediated one-electron reduction.  相似文献   

10.
Ecosystem tracer-level additions would benefit from a stable isotope-labeled source of complex organic molecules. We tested a method to label tree C with 13C and create a stable isotope tracer for stream dissolved organic carbon (DOC) using tulip poplar (Liriodendron tulipifera L.) seedlings. In 2000, seedlings were grown with 0.82 moles of 13CO2 to assess the distribution and level of 13C enrichment in the tree tissues. In 2001, seedlings were grown with 25 times more 13CO2 to generate tissues with a 13C signal strong enough for a 13C-DOC stream tracer addition. 13C enrichment in the trees varied in each year and by tissue age and type. Tissues formed during labeling (new) were more enriched in 13C than tissues established prior to the 13CO2 injection (old). Stems were most enriched in 13C in both new and old tissues. A higher percentage of 13CO2 was incorporated into seedlings in 2000 (59% ±1) than 2001 (43% ±0). Percent 13C incorporation among tree tissue types paralleled biomass distributions. Although tree C and 13C were equally soluble in both years, a greater percentage of tree C went into solution in 2001 (30%) than 2000 (20%). The water-soluble tree C accounted for approximately 12% of the injected 13CO2 and had both humic and polysaccharide components. Results from a whole-stream 13C-DOC tracer addition demonstrated that tree C could be sufficiently labeled with 13CO2 to create a stream DOC isotope tracer with some polymeric constituents.  相似文献   

11.
The assignment of the aliphatic 13C resonances of trimeric Bacillus Subtilis chorismate mutase, a protein with a molecular mass of 44 kDa, consisting of three 127-residue monomers is presented by use of two-dimensional (2D) 13C-start and 13C-observe NMR experiments. These experiments start with 13C excitation and end with 13C observation while relying on the long transverse relaxation times of 13C spins in uniformly deuterated and 13C,15N-labeled large proteins. Gains in sensitivity are achieved by the use of a paramagnetic relaxation enhancement agent to reduce 13C T 1 relaxation times with little effect on 13C T 2 relaxation times. Such 2D 13C-only NMR experiments circumvent problems associated with the application of conventional experiments for side-chain assignment to proteins of larger sizes, for instance, the absence or low concentration of the side-chain 1H spins, the transfer of the side-chain spin polarization to the 1HN spins for signal acquisition, or the necessity of a quantitative reprotonation of the methyl moieties in the otherwise fully deuterated side-chains. We demonstrate that having obtained a nearly complete assignment of the side-chain aliphatic 13C resonances, the side-chain 1H chemical shifts can be assigned in a semiautomatic fashion using 3D 15N-resolved and 13C-resolved NOESY experiments measured with a randomly partially protonated protein sample. We also discuss perspectives for structure determination of larger proteins by using novel strategies which are based on the 1H,1H NOEs in combination with multiple residual dipolar couplings between adjacent 13C spins determined with 2D 13C-only experiments.  相似文献   

12.
The in vitro cultured liverwort Jungermannia subulata produces the unique molecule subulatin. In this study, we examined the incorporation of [1-13C] and [1,2-13C2] glucose, [2-13C] arabinose, [2-13C] caffeic acid, and [1-13C] phenylalanine into subulatin. The trilobatinoic acid C unit of subulatin incorporated 13C atoms from [1-13C] and [1,2-13C2] glucose and from [2-13C] arabinose but not from any other of the other precursors. Based on these results and labeling patterns, the trilobatinoic acid C unit of subulatin appears to be biosynthesized from arabinose-5-phosphate and phosphoenolpyruvate.  相似文献   

13.
NMR spectroscopy has great potential to provide us with information on structure and dynamics at atomic resolution of glycoproteins in solution. In larger glycoproteins, however, the detrimental fast 1H transverse relaxation renders the conventional 1H-detected NMR experiments difficult. 13C direct detection potentially offers a valuable alternative to 1H detection to overcome the fast T2 relaxation. Here, we applied 13C-detected NMR methods to observe the NMR signals of 13C-labeled glycans attached to the Fc fragment of immunoglobulin G with a molecular mass of 56 kDa. Spectral analysis revealed that a 13C-detected 13C-13C NOESY experiment is highly useful for spectral assignments of the glycans of large glycoproteins. This approach would be, in part, complementary to 13C-13C TOCSY and 1H-detection experiments.  相似文献   

14.
Formaldehyde (HCHO) is suggested to be detoxified through one‐carbon (C1) metabolism or assimilated by the Calvin cycle in plants. To further understand the function of the Calvin cycle and C1 metabolism in HCHO metabolism in plants, HCHO elimination and metabolism by Arabidopsis thaliana in HCHO solutions was investigated in this study. Results verified that Arabidopsis could completely eliminate aqueous HCHO from the HCHO solutions. Carbon‐13 nuclear magnetic resonance (13C‐NMR) analysis showed that H13CHO absorbed by Arabidopsis was first oxidized to H13COOH. Subsequently, a clear increase in [U‐13C]Gluc peaks accompanied by a strong enhancement in peaks of [2‐13C]Ser and [3‐13C]Ser appeared in Arabidopsis. Pretreatment with cyclosporin A or L‐carnitine, which might inhibit the transport of 13C‐enriched compounds into chloroplasts and mitochondria, caused a remarkable decline in yields of both [U‐13C]Gluc and [3‐13C]Ser in H13CHO‐treated Arabidopsis. These results suggested that both the Calvin cycle and the C1 metabolism functioned simultaneously during HCHO detoxification. Moreover, both functioned more quickly under high H13CHO stress than low H13CHO stress. When a photorespiration mutant was treated in 6 mm H13CHO solution, formation of [U‐13C]Gluc and [2‐13C]Ser was completely inhibited, but generation of [3‐13C]Ser was not significantly affected. This evidence suggested that the Calvin cycle and C1 metabolism functioned independently in Arabidopsis during HCHO metabolism.  相似文献   

15.
Resuspension cultures of Gibberella fujikuroi, strain GF-1a, were shown to metabolise potassium [3′-13C] mevalonate to 13C-enriched C19-gibberellins, plus 13CO2 (derived from the loss of carbon-20). The formation of [13C]-gibberellins could be observed in vivo using 13C NMR; however that of 13CO2 could not. In contrast, removal of the mycelium and concentration of the filtrate at pH 12 enabled the 13CO2 produced to be observed using 13C NMR. During incubations of H14CO2Na with this fungus, complete conversion to other radioactive products was observed, and the significance of these results in the light of previous work is discussed.  相似文献   

16.
A comparison of three labeling strategies for studies involving side chain methyl groups in high molecular weight proteins, using 13CH3,13CH2D, and 13CHD2 methyl isotopomers, is presented. For each labeling scheme, 1H–13C pulse sequences that give optimal resolution and sensitivity are identified. Three highly deuterated samples of a 723 residue enzyme, malate synthase G, with 13CH3,13CH2D, and 13CHD2 labeling in Ile δ1 positions, are used to test the pulse sequences experimentally, and a rationalization of each sequence’s performance based on a product operator formalism that focuses on individual transitions is presented. The HMQC pulse sequence has previously been identified as a transverse relaxation optimized experiment for 13CH3-labeled methyl groups attached to macromolecules, and a zero-quantum correlation pulse scheme (13CH3 HZQC) has been developed to further improve resolution in the indirectly detected dimension. We present a modified version of the 13CH3 HZQC sequence that provides improved sensitivity by using the steady-state magnetization of both 13C and 1H spins. The HSQC and HMQC spectra of 13CH2D-labeled methyl groups in malate synthase G are very poorly resolved, but we present a new pulse sequence, 13CH2D TROSY, that exploits cross-correlation effects to record 1H–13C correlation maps with dramatically reduced linewidths in both dimensions. Well-resolved spectra of 13CHD2-labeled methyl groups can be recorded with HSQC or HMQC; a new 13CHD2 HZQC sequence is described that provides improved resolution with no loss in sensitivity in the applications considered here. When spectra recorded on samples prepared with the three isotopomers are compared, it is clear that the 13CH3 labeling strategy is the most beneficial from the perspective of sensitivity (gains ≥2.4 relative to either 13CH2D or 13CHD2 labeling), although excellent resolution can be obtained with any of the isotopomers using the pulse sequences presented here.  相似文献   

17.
The aim of the current study was to explore the use of the tracer 13C as an internal marker to assess feed fraction-specific digesta passage kinetics through the digestive tract of dairy cows. Knowledge on feed-specific fractional passage rates is essential to improve estimations on the extent of rumen degradation and microbial protein efficiency; however, this information is largely lacking. An in vivo and in vitro experiment was conducted with grass silages (Lolium perenne L.) that were enriched with 13C by growing the grass under elevated 13CO2 conditions. In a crossover design, two dairy cows received pulse doses of two 13C-enriched grass silages and chromium-mordanted neutral detergent fibre (Cr-NDF) into the rumen. The two 13C-enriched grass silages used differed in digestibility and were grown under identical field conditions as the bulk silages fed to the animals. Faecal excretion patterns of 13C-enriched dry matter (13C-DM), neutral detergent fibre (13C-NDF) and Cr-NDF were established, and a nonlinear multicompartmental model was used to determine their rumen passage kinetics. In addition, the 13C-enriched silages were incubated in rumen liquid in an in vitro batch culture system at different time intervals to determine the effect of fermentation on 13C-enrichment in the residue. The in vitro study showed that the 13C : 12C ratios in DM and NDF residues remained stable from 24 h of incubation onwards. In addition, in vitro fractional degradation rates for 12C in the DM and NDF did not differ from those of 13C, indicating that fermentative degradation does not affect the 13C : 12C ratio in the DM nor in the NDF fraction of the residue. Model fits to the faecal excretion curves showed a significant difference in fractional rumen passage rates between Cr-NDF, 13C-DM and 13C-NDF (P ⩽ 0.025). Silage type had no clear effect on rumen passage kinetics (P ⩾ 0.081). Moreover, it showed that peak enrichments for 13C-DM and 13C-NDF in faeces were reached at 30.7 and 41.7 h post dosing, respectively. This is well after the time (24 h) when the 13C : 12C ratios of the in vitro unfermented residues have reached stable enrichment level. Fractional rate constants for particle passage from the rumen are estimated from the descending slope of faecal excretion curves. The present study shows that the decline in 13C : 12C ratio after peak enrichment is not affected by fermentative degradation and therefore can be used to assess feed component-specific fractional passage rates.  相似文献   

18.
High-resolution heteronuclear NMR correlation experiments and strategies are proposed for the assignment of fully13 C/15N-labelled polypeptides in the solid state. By the combination of intra-residue and inter-residue13 C-15N correlation experiments with13 C-13C spin-diffusion studies, it becomes feasible to partially assign backbone and side-chain resonances in solid proteins. The performance of sequences using 15N instead of13 C detection is evaluated regarding sensitivity and resolution for a labelled dipeptide (L-Val-L-Phe). The techniques are used for a partial assignment of the 15N and 13C resonances in human ubiquitin.  相似文献   

19.
The 13C NMR signals of rosenonolactone have been assigned utilizing the 13C-13C couplings in material obtained biosynthetically from sodium [1,2-13C2] acetate.  相似文献   

20.
Inter and intra-annual carbon isotope compositions (δ13C) of several annual growth rings of teak trees from two monsoonal regimes from India were studied and compared with the corresponding oxygen isotopic (δ18O) variations. In teak from both the regimes, amplitudes of intra-annual δ13C were ∼2-3 times lower than that observed in δ18O. Seasonal cycle with lower δ13C values at the middle and higher at ring boundaries was observed for teak from central India, dominated by the southwest monsoon. Positive correlations of intra-annual δ13C values with the corresponding δ18O values of the same rings and with relative humidity (RH) of the concurrent period suggest a dominant role of RH in controlling δ13C values of teak from central India. Intra-annual δ13C variations of teak from southern India, receiving both the southwest and northeast monsoons, revealed an initial decreasing trend followed by an increasing trend before culminating in depleted 13C values at the end of the growing season. No correlation was observed between intra-annual δ13C and δ18O variations of teak trees from southern India. Regional differences in the climatology of δ13C of atmospheric CO2 or the lengths of growing season could be likely reasons for differing intra-annual δ13C variations of teak from the two climatic regimes.  相似文献   

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