Conventional farming impairs Rhizoctonia solani disease suppression by disrupting soil food web

Intensive farming in agriculture raises questions in relation to environmental sustainability and the widespread use of agrochemicals. In the present work, we compare the impact of organic and intensive farming, in connection to the soil suppressiveness against the soilborne pathogen Rhizoctonia solani. Three farms were considered in the study: two practicing organic cultivation (for 10 and 20 years, respectively), and one applying conventional cultivation. Soil suppressiveness was assessed in a greenhouse bioassay with lettuce (Lactuca sativa). Soil microbiome was characterized by combining BIOLOG EcoPlates^? with high‐throughput sequencing of bacterial and eukaryotic rRNA gene markers. Suppressiveness towards R. solani was higher in organic than in conventional farming soil, but this property was lost after soil sterilization. Functional biodiversity was significantly higher in the two organic soils, and this parameter was predictive of the suppressiveness towards R. solani. According to our analyses, the overall microbial taxonomic diversity was unlinked to suppressiveness. A correlation analysis, carried out at the genus level for the most abundant bacterial and eukaryotic microbial taxa, showed that 58.7% of the genera had a statistically significant correlation with suppressiveness. In particular, the genera Flavisolibacter, Massilia, Pseudomonas, Ramlibacter, Rhizophus and the oligochaete worms belonging to the Enchytraeidae family positively correlated with the disease suppression.     

Mechanisms of natural soil suppressiveness to soilborne diseases

Suppressive soils are characterized by a very low level of disease development even though a virulent pathogen and susceptible host are present. Biotic and abiotic elements of the soil environment contribute to suppressiveness, however most defined systems have identified biological elements as primary factors in disease suppression. Many soils possess similarities with regard to microorganisms involved in disease suppression, while other attributes are unique to specific pathogen-suppressive soil systems. The organisms operative in pathogen suppression do so via diverse mechanisms including competition for nutrients, antibiosis and induction of host resistance. Non-pathogenic Fusarium spp. and fluorescent Pseudomonas spp. play a critical role in naturally occurring soils that are suppressive to Fusarium wilt. Suppression of take-all of wheat, caused by Gaeumannomyces graminis var. tritici, is induced in soil after continuous wheat monoculture and is attributed, in part, to selection of fluorescent pseudomonads with capacity to produce the antibiotic 2,4-diacetylphloroglucinol. Cultivation of orchard soils with specific wheat varieties induces suppressiveness to Rhizoctonia root rot of apple caused by Rhizoctonia solani AG 5. Wheat cultivars that stimulate disease suppression enhance populations of specific fluorescent pseudomonad genotypes with antagonistic activity toward this pathogen. Methods that transform resident microbial communities in a manner which induces natural soil suppressiveness have potential as components of environmentally sustainable systems for management of soilborne plant pathogens. This revised version was published online in August 2006 with corrections to the Cover Date.     

Chemical soil conditions in pristineNothofagus forests of New Zealand as compared to German forests

In many German forest soils low base saturation of CEC in deeper soil layers was reported and acidic deposition is seen as the major cause of these findings. To test this hypothesis we sampled 5 New Zealand forest soils from pristine beech (Nothofagus fusca, N. menziesii, N. solandri) sites under climatic and geological conditions comparable to higher elevations in Germany. The soils developed from granite and greywacke. Soil samples were analyzed for pH and the exchangeable cations were extracted with 1M NH₄Cl. The base saturation of all soil profiles was very low, even in deeper layers and was thus similar to the patterns found in many German forest soils. The pH was generally higher in the New Zealand soils as compared to Germany. The reason for the depletion of base cations in deeper soil layers of New Zealand forest soils is most likely the leaching of base cations with HCO₃ ^- resulting from the dissociation of carbonic acid in connection with high amounts of seepage. Thus, under high rainfall conditions, the low base saturation found in deeper layers of forest soils cannot exclusively be attributed to the effects of acidic depositions and land use. ei]Section editor: R F Huettl     

Control of soil pH on turnover of belowground organic matter in subalpine grassland

Grasslands store substantial amounts of carbon in the form of organic matter in soil and roots. At high latitudes and elevation, turnover of these materials is slow due to various interacting biotic and abiotic constraints. Reliable estimates on the future of belowground carbon storage in cold grassland soils thus require quantitative understanding of these factors. We studied carbon turnover of roots, labile coarse particulate organic matter (cPOM) and older non-cPOM along a natural pH gradient (3.9–5.9) in a subalpine grassland by utilizing soil fractionation and radiocarbon dating. Soil carbon stocks and root biomass, turnover, and decomposability did not scale with soil pH whereas mean residence times of both soil organic matter fractions significantly increased with declining pH. The effect was twice as strong for non-cPOM, which was also stronger enriched in ¹⁵N at low pH. Considering roots as important precursors for cPOM, the weaker soil pH effect on cPOM turnover may have been driven by comparably high root pH values. At pH < 5, long non-cPOM mean residence times were probably related to pH dependent changes in substrate availability. Differences in turnover along the pH gradient were not reflected in soil carbon stocks because aboveground productivity was lower under acidic conditions and, in turn, higher inputs from aboveground plant residues compensated for faster soil carbon turnover at less acidic pH. In summary, the study provides evidence for a strong and differential regulatory role of pH on the turnover of soil organic matter that needs consideration in studies aiming to quantify effects of changing environmental conditions on belowground carbon storage.     

Effects of soil acidification and subsequent leaching on levels of extractable nutrients in a soil

Summary The effects of soil acidification (pH values from 6.5 to 3.8), and subsequent leaching, on levels of extractable nutrients in a soil were studied in a laboratory experiment. Below pH 5.5, acidification resulted in large increases in the amounts of exchangeable Al in the soil. Simultaneously, exchangeable cations were displayed from exchange sites and Ca, Mg, K and Na in soil solution increased markedly. With increasing soil acidification, increasing amounts of cations were leached; the magnitude of leaching loss was in the same order as the cations were present in the soil: Ca²⁺>Mg²⁺>K⁺>Na⁺. Soil acidification appeared to inhibit nitrification since in the unleached soils, levels of NO ₃ ⁻ clearly declined below pH 5.5 and at the same time levels of NH ₄ ⁺ increased greatly. Significant amounts of NH ₄ ⁺ and larger amounts of NO ₃ ⁻ , were removed from the soil during leaching. Concentrations of NaHCO₃-extractable phosphate remained unchanged between pH 4.3 and 6.0 but were raised at higher and lower pH values. No leaching losses of phosphate were detected. For the unleached soils, levels of EDTA-extractable Mn and Zn increased as the soil was acidified whilst levels of extractable Fe were first decreased and then increased greatly and those for Cu were decreased slightly between pH 6.5 and 6.0 and then unaffected by further acidification. Significant leaching losses of Mn and Zn were observed at pH values below 5.5 but losses of Fe were very small and those of Cu were not detectable.     

Effect of biofumigation and chemical fumigation on soil microbial community structure and control of pepper Phytophthora blight

Soil biofumigation with brassica plant residues has been shown to significantly suppress soilborne pathogen. However, little published data reported the impact of biofumigation on microbial community structure in pepper (Capsicum annuum L.) production systems under field conditions. Biofumigation with rapeseed (Brassica napus ‘Dwarf Essex’) meal and chemical fumigation with dazomet were tested to control the pepper disease caused by Phytophthora capsici. BF treatment showed the lowest disease incidence among these treatments. Effects on soil bacterial and fungal communities were assessed by denaturating gradient gel electrophoresis and the results showed that the biofumigation increased bacterial diversity and decreased fungal diversity. There was a negative correlation between soil bacterial diversity and disease incidence and a positive correlation between soil fungal diversity and disease incidence. Cloning of the microbial community showed that the microbial community structures were altered by biofumigation. Soil was also evaluated for their chemical properties. Biofumigation increased soil content of total N, NO₃ ^?–N, available P and available K. A significant correlation between soil microbial community structures and soil chemical properties was found. Overall, these results indicated that biofumigation reduced disease incidence of pepper through altering soil microbial community structures.     

Resident bacteria, nitric oxide emission and particle size modulate the effect of Brassica napus seed meal on disease incited by Rhizoctonia solani and Pythium spp

Amendment of orchard soil with low-glucosinolate Brassica napus (rape) seed meal (RSM) suppresses infection of apple roots by Rhizoctonia solani but increases incidence of Pythium spp. infection. Following incorporation of Brassica sp. seed meals, soils were monitored for changes in populations of selected saprophytic and plant pathogenic microorganisms. When conducted in pasteurized soil, which possessed high numbers of Bacillus spp. and lower than detectable numbers of Streptomyces spp., RSM amendment did not provide control of R. solani. Populations of streptomycetes in RSM-amended soil increased to stable levels >20-fold higher than in non-amended soil. Disease suppressiveness was restored to pasteurized RSM-amended soil by adding any of several Streptomyces strains. Maximal rates of nitrification in orchard soil, determined by nitric oxide emission, were observed within two weeks following RSM amendment and inhibition of nitrification via application of nitrapyrin abolished the capacity of RSM to suppress R. solani infection of apple roots when seedlings were planted one day after soil amendment. Apple seedling mortality and Pythium spp. root infection were highest for seedlings planted immediately following incorporation of B. napus cv. Athena RSM, particularly when meal was added in a flake rather than powder form. Lower infection frequencies were observed for seedlings planted four weeks after RSM incorporation, even for soil in which densities of culturable Pythium spp. had not declined. Our results demonstrate that suppression of Rhizoctonia root rot in response to RSM amendment requires the activity of the resident soil microbiota and that initial disease control is associated with the generation of nitric oxide through the process of nitrification.     

Integration of Pythium nunn and Trichoderma harzianum isolate T-95 for the biological control of Pythium damping-off of cucumber

Two biological control agents, Pythium nunn and Trichoderma harzianum isolate T-95, were combined to reduce Pythium damping-off of cucumber in greenhouse experiments lasting 3–4 weeks. T. harzianum T-95, a rhizosphere competent mutant, was applied to seeds and P. nunn was applied to pasteurized and raw soils naturally and artificially infested with Pythium ultimum. Some treatments were also amended with bean leaves to enhance the activity of P. nunn. The biological control of Pythium damping-off was evaluated in a Colorado soil (Nunn sandy loam) and an Oregon soil mix, which were replanted twice after 2 and 3 months. Interactions between P. nunn and T-95 were detected in the Colorado but not the Oregon soil. No consistent evidence of antagonism between P. nunn and T. harzianum was seen, and significant interactions were detected in the Colorado, but not the Oregon soil. In the first planting of some treatments, the combination of P. nunn and T. harzianum gave greater control of damping-off than either applied alone. P. nunn was most effective in soils that were pasteurized or amended with bean leaves. T. harzianum controlled Pythium damping-off in the Colorado, but not the Oregon soil. In both soils, disease declined over time in treatments amended with bean leaves but without P. nunn or T. harzianum added. This suppression was greater in the Colorado soil, which contained an indigenous population of P. nunn. This work demonstrates that two compatible biological control agents can be combined to give additional control of a soil-borne plant pathogen.     

Bioorganic Fertilizer Enhances Soil Suppressive Capacity against Bacterial Wilt of Tomato

Tomato bacterial wilt caused by Ralstonia solanacearum is one of the most destructive soil-borne diseases. Many strategies have been taken to improve soil suppressiveness against this destructive disease, but limited success has been achieved. In this study, a novel bioorganic fertilizer revealed a higher suppressive ability against bacterial wilt compared with several soil management methods in the field over four growing seasons from March 2011 to July 2013. The application of the bioorganic fertilizer significantly (P<0.05) reduced disease incidence of tomato and increased fruit yields in four independent trials. The association among the level of disease incidence, soil physicochemical and biological properties was investigated. The soil treated with the bioorganic fertilizer increased soil pH value, electric conductivity, organic carbon, NH₄ ⁺-N, NO₃ ^--N and available K content, microbial activities and microbial biomass carbon content, which were positively related with soil suppressiveness. Bacterial and actinomycete populations assessed using classical plate counts were highest, whereas R. solanacearum and fungal populations were lowest in soil applied with the bioorganic fertilizer. Microbial community diversity and richness were assessed using denaturing gel gradient electrophoresis profile analysis. The soil treated with the bioorganic fertilizer exhibited higher bacterial community diversity but lower fungal community diversity. Redundancy analysis showed that bacterial community diversity and richness negatively related with bacterial wilt suppressiveness, while fungal community richness positively correlated with R. solanacearum population. We concluded that the alteration of soil physicochemical and biological properties in soil treated with the bioorganic fertilizer induced the soil suppressiveness against tomato bacterial wilt.     

Effect of different soil types,pH and phosphorus levels on the wheat seedling and the incidence ofPythium graminicolum

Summary In the present study, the effect of different types of soil, pH and phosphorus levels on root, shoot development and browning extent on shoot of wheat seedlings growth in soil inoculated withPythium graminicolum; was studied. Out of the four soil types the development of root and shoot was better in Domatta soil where as the disease development was more in black clay soil. The pH values below 5.5 and above 8.0 are favourable for the root and shoot development whereas these values are unfavourable for the development of the Pythium and consequently for infection by it. The percentage of browning of the collar region was more in soils near neutral (pH 6.5–7.1) and it was less in acidic (pH 5.0) or alkaline (pH 8.6) soils. The development of wheat roots and shoot in soil with 30 lb/acre phosphorus was good as compared to that in soil with P₀, P_15,45 and P₆₀ lb/acre in inoculated soil. The percentage of extent of browning on collar region was less at 15 lb and 30 lb/acre P, due to less development of the disease.     

Experimental evidence of a deleterious soil microflora associated with Norway spruce decline in France and Germany

Norway spruce (Picea abies (L.) Karst.) seedlings were grown in a glasshouse pot experiment in soils from 11 declining and 7 healthy spruce stands from France and Germany. In soils from 9 declining stands, seedlings showed decline symptoms (needle yellowing). Soil pasteurization suppressed the symptoms, and reinoculation of the pasteurized soil with a rhizospheric extract from the corresponding stand re-induced yellowing. This suggests that a deleterious soil microflora is associated with spruce decline. The occurrence of this microflora seems to be correlated with the main chemical characteristics of the soils (low pH, low saturation of the adsorbing complex, low exchangeable Ca²⁺ and Mg²⁺, and high level of exchangeable Al). ei]R F Huettl     

氨基酸添加对亚热带森林红壤氮素转化的影响

为探究氨基酸氮形态对亚热带土壤氮素含量及转化的影响,选择建瓯市万木林保护区的山地红壤为对象,采用室内培养实验法,通过设计60%和90%WHC两种土壤含水量并添加不同性质氨基酸,测定了土壤中铵态氮、硝态氮、可溶性有机氮的含量和氧化亚氮的释放量,分析了可溶性有机碳、土壤p H值的大小变化及其与氮素的相互关系。结果表明:与对照处理相比,氨基酸添加显著增加了土壤NH_4~+-N含量并使土壤p H值升高,且在一定程度上解除了高含水量(90%WHC)对NH_4~+-N产生的抑制,其中甲硫氨基酸的效果最为明显。酸性、碱性、中性氨基酸对土壤NO_3~--N含量和N_2O释放影响不显著,但甲硫氨基酸可显著抑制土壤硝化从而导致NH_4~+-N的积累,并在培养前期抑制土壤N_2O产生而在培养后期促进N_2O释放,总体上促进N_2O释放。60%WHC的氨基酸添加处理较90%WHC条件下降低土壤可溶性有机氮的幅度更大。氨基酸对土壤氮素转化的影响与带电性关系较小,而可能与其分解产物密切相关。可见,不同性质氨基酸处理对森林土壤氮素含量及转化存在不同程度的影响,且甲硫氨基酸对土壤氮素转化的影响机理值得深入研究。     

Rapid development of phosphorus limitation in temperate rainforest along the Franz Josef soil chronosequence

The aim of this study was to examine how shifts in soil nutrient availability along a soil chronosequence affected temperate rainforest vegetation. Soil nutrient availability, woody plant diversity, composition and structure, and woody species leaf and litter nutrient concentrations were quantified along the sequence through ecosystem progression and retrogression. In this super-wet, high leaching environment, the chronosequence exhibited rapid soil development and decline within 120,000 years. There were strong gradients of soil pH, N, P and C, and these had a profound effect on vegetation. N:P_leaf increased along the chronosequence as vegetation shifted from being N- to P- limited. However, high N:P_leaf ratios, which indicate P-limitation, were obtained on soils with both high and low soil P availability. This was because the high N-inputs from an N-fixing shrub caused vegetation to be P-limited in spite of high soil P availability. Woody species nutrient resorption increased with site age, as availability of N and P declined. Soil P declined 8-fold along the sequence and P resorption proficiency decreased from 0.07 to 0.01%, correspondingly. N resorption proficiency decreased from 1.54 to 0.26%, corresponding to shifts in mineralisable N. Woody plant species richness, vegetation cover and tree height increased through ecosystem progression and then declined. During retrogression, the forest became shorter, more open and less diverse, and there were compositional shifts towards stress-tolerant species. Conifers (of the Podocarpaceae) were the only group to increase in richness along the sequence. Conifers maintained a lower N:P_leaf than other groups, suggesting superior acquisition of P on poor soils. In conclusion, there was evidence that P limitation and retrogressive forests developed on old soils, but N limitation on very young soils was not apparent because of inputs from an abundant N-fixing shrub.Electronic Supplementary Material Supplementary material is available in the online version of this article at .     

Effects of soil pH and nitrogen fertility on the population dynamics of Thielaviopsis basicola

Black root rot of tobacco, caused by Thielaviopsis basicola, is generally severe at soil pH values >5.6 and suppressed under more acidic conditions (pH < 5.2). Soil acidifying fertilizers containing NH₄–N are generally recommended for burley tobacco production in North Carolina, but the effects of N form and application rate on development of black root rot and on the population dynamics of T. basicola have not been determined. Greenhouse and laboratory studies were conducted to evaluate the effects of N form (NH₄ ⁺ or NO₃ ^–) and rate on pathogen and disease parameters at several initial soil pH levels. A moderately-conducive field soil, initial pH 4.7, was adjusted to a pH of 5.5 or 6.5 by the addition of CaOH₂, then amended with the desired nitrogen form and rate. Pathogen populations were determined over time. In addition, spore production in extracts of roots from plants grown in the various nitrogen and pH treatments was determined. Finally, because tobacco responds to acidic soil conditions and exposure to NH₄–N by accumulating high concentrations of the polyamine putrescine, the toxicity of putrescine on vegetative growth and reproduction of T. basicola was investigated. Low soil pH and high levels of NH₄–N suppressed reproduction of T. basicola in soil and in root extract, while use of NO₃–N and depletion of NH₄–N resulted in rapid increases in populations of T. basicola. At 20 mM, putrescine inhibited hyphal growth by 60% and aleuriospore production by 98%. Fertilizers that reduced soil pH also reduced reproduction by T. basicola, and thus have potential for management of black root rot by suppressing populations of T. basicola over multiple years of crop production. The suppression of T. basicola and black root rot observed with NH₄–N amendments may partially be due to development of an inhibitory environment in the root and not solely to changes in rhizosphere pH.     

pH buffering in acidic soils developed under Picea abies and Quercus robur – effects of soil organic matter, adsorbed cations and soil solution ionic strength

Soil solution chemistry, soil acidity andcomposition of adsorbed cations were determinedin two soil profiles developed under a mixedspruce (Picea abies and Piceasitchensis) stand and in one soil profiledeveloped under an oak (Quercus robur)stand. Soils under spruce were classified asSpodosols and soils under oak were classifiedas Inceptisols. All profiles were developed inthe same parent material; a Saahlian sandy tillcontaining less than 2% clay. In the mineralsoil, the contribution from mineral surfaces tothe total cation-exchange capacity (CEC_t)was estimated to be less than 3%. Soilsolution pH and the percent base saturation ofCEC_t [%BS = 100 (2Ca + 2Mg + Na + K)CEC_t ^–1] were substantially lower inthe upper 35–40 cm of the two Spodosols, ascompared to the Inceptisol. The total amount ofsoil adsorbed base cations (BC) did not differamong the three profiles on an area basis downto 1 m soil depth. Thus, soil acidification ofCEC_t due to net losses of BC could notexplain differences in soil pH and %BS amongthe soil profiles. A weak acid analogue, takingthe pH-effect of metal complexation intoconsideration, combined with soil solutionionic strength as a covariate, could describeboth the pH variation by depth within soilprofiles and pH differences between theInceptisol and the two Spodosol profiles. Ourresults confirm and extend earlier findingsfrom O and E horizons of Spodosols that theextent to which organic acid groups react withAl minerals to form Al-SOM complexes is a majorpH-buffering process in acidic forest soils. Wesuggest that an increasing Al-saturation of SOMis the major reason for the widely observed pHincrease by depth in acidic forest soils with apH less than approximately 4.5. Our resultsstrongly imply that changes in mass of SOM, theionic strength in soil solution and therelative composition of soil adsorbed Al and Hneed to be considered when the causality behindchanges in pH and base saturation isinvestigated.     

Pig slurry reduces the survival of Ralstonia solanacearum biovar 2 in soil

The effect of added pig slurry and solarization on the survival of Ralstonia solanacearum biovar 2 strain 1609 in soil was analysed in soil microcosms and field plots. In addition, the invasion of potato plants by R. solanacearum and the development of disease symptoms were determined, as measures of induced disease suppressiveness. In untreated soil, R. solanacearum showed slow population declines in both microcosms and the field from, initially, 10(6-)10(7) to 10(3)-10(4) CFU.(g dry soil)(-1) in about 9 weeks. The suppressiveness assays of these untreated soils after this period revealed that most of the plants that were used developed wilting symptoms and (or) contained the pathogen in their lower stem parts, as shown by immunofluorescence colony staining and PCR. The addition of pig slurry resulted in a significantly lower population size of R. solanacearum as well as reduced numbers of infected and (or) diseased plants in the soil suppressiveness tests. On the other hand, solarization of soil also decreased R. solanacearum survival but did not enhance soil suppressiveness as measured by development of disease symptoms and (or) plant invasion after 9 weeks. Combined soil solarization and pig slurry addition showed an additive effect of both treatments. Healthy-looking plants, primarily from soils treated with pig slurry and solarization, incidentally revealed the latent presence of R. solanacearum in the lower stem parts. The mechanism behind the enhanced population declines and disease suppressiveness induced by pig slurry is unclear but shifts in community profiles were clearly discernible by PCR - denaturing gradient gel electrophoresis 9 weeks after pig slurry addition in the field experiment, indicating induced changes in the bacterial community structure.     

Identifying microorganisms which fill a niche similar to that of the pathogen: a new investigative approach for discovering biological control organisms

Understanding the mechanisms of suppressive soils should lead to the development of new strategies to manage pests and diseases. For suppressive soils that have a biological nature, one of the first steps in understanding them is to identify the organisms contributing to this phenomenon. Here we present a new approach for identifying microorganisms involved in soil suppressiveness. This strategy identifies microorganisms that fill a niche similar to that of the pathogen by utilizing substrate utilization assays in soil. To demonstrate this approach, we examined an avocado grove where a Phytophthora cinnamomi epidemic created soils in which the pathogen could not be detected with baiting techniques, a characteristic common to many soils with suppressiveness against P. cinnamomi. Substrate utilization assays were used to identify rRNA genes (rDNA) from bacteria that rapidly grew in response to amino acids known to attract P. cinnamomi zoospores. Six bacterial rDNA intergenic sequences were prevalent in the epidemic soils but uncommon in the non-epidemic soils. These sequences belonged to bacteria related to Bacillus mycoides, Renibacterium salmoninarum, and Streptococcus pneumoniae. We hypothesize that bacteria such as these, which respond to the same environmental cues that trigger root infection by the pathogen, will occupy a niche similar to that of the pathogen and contribute to suppressiveness through mechanisms such as nutrient competition and antibiosis.     

Atmospheric Methane Consumption by Forest Soils and Extracted Bacteria at Different pH Values

The effect of pH on atmospheric methane (CH₄) consumption was studied with slurries of forest soils and with bacteria extracted from the same soils. Soil samples were collected from a mixed hardwood stand in New Hampshire, from jackpine and aspen stands at the BOREAS (Boreal Ecosystem Atmosphere Study) site near Thompson, northern Manitoba, from sites in southern Québec, including a beech stand and a meadow, and from a site in Ontario (cultivated humisol). Consumption of atmospheric CH₄ (concentration, approximately 1.8 ppm) occurred at depths of >5 cm in both acidic (pH 4.5 to 5.2) and alkaline (pH 7.2 to 7.8) soils. In slurries of acidic soils, maximum activity occurred at different pH values (pH 4.0 to 6.5). Bacteria extracted from these soils by high-speed blending and density gradient centrifugation showed pH responses different from the pH responses of the slurries. In all cases, these bacteria had a methanotrophy pH optimum of 5.8 and exhibited no activity at pH 6.8 to 7.0, the pH optimum range for known methanotrophs. This difference in pH responses could be useful in modifying media currently used for isolation of these organisms. Methanotrophic activity was induced in previously non-CH₄-consuming soils by preincubation with 5% (vol/vol) CH₄ (50,000 μl of CH₄ per liter) or by liquid enrichment with 20% CH₄. The bacteria showed pH responses typical of known methanotrophs and not typical of preexisting consumers of ambient CH₄. Furthermore, methanotrophs induced by high CH₄ levels were more readily extracted from soil than preexisting ambient CH₄ consumers were. In the alkaline soils, preexisting activity either was destroyed or resisted extraction by the procedure used. The results support the hypothesis that consumers of ambient CH₄ in soils are physiologically distinct from the known methanotrophs.     

Nutrient composition of Douglas-fir rhizosphere and bulk soil solutions

Rhizosphere soil solution is the direct source of nutrients for plant uptake. The nutrient composition of rhizosphere soil solution can be very different from that of bulk soil solution due to root exudation, nutrient uptake and rhizosphere microorganism activity. This study examined the nutrient composition of Douglas-fir rhizosphere soil solution in two soils belonging to the Nisqually and Pitcher soil series and compared rhizosphere solution with that of bulk soil solution. Fertilized and unfertilized Nisqually soils were also compared. Soil solutions were collected using centrifugation. Results indicated that nutrient concentrations in the rhizosphere solutions were typically higher than that of bulk soil solutions when no fertilizer was applied. Differences in the concentrations of nutrients between the rhizosphere and bulk soil solutions were masked by the addition of fertilizers. Rhizosphere solution pH also appeared to be affected by the concentration of NH₄ and NO₃ in the solution. With a higher concentration of NH₄ relative to NO₃ in the rhizosphere soil solution, the solution pH of the rhizosphere was lower than that of the bulk soil, but with a lower concentration of NH₄ relative to NO₃, the solution pH of the rhizosphere was higher than that of the bulk soil solution.     

Effects of soil acidity on nodulation ofAlnus glutinosa and viability ofFrankia

Summary Black alder seedlings were grown from seed for 7 weeks in six soils limed to various pH levels and inoculated withFrankia in two inoculation-seeding time combinations (inoculated and seeded concurrently; inoculated then seeded 5 weeks after inoculation). Three mine soils and three non-mine soils were used. Soil pHs in the study ranged from 3.6 to 7.6. In the second inoculation-seeding time combination, a series of soil samples at each of the pH levels below 7.0 were relimed to pH 7.0 immediately prior to seeding. The purpose of the study was to examine the effects of soil acidity on the nodulation of black alder byFrankia and the viability ofFrankia in acid soils. Based on the average number of nodules established per seedling, soil pH was determined to be a significant factor affecting nodulation in the mine soils. The highest levels of nodulation occurred between soil pH 5.5 and 7.2. Below pH 5.5, nodulation was reduced. There was also evidence of decreased viability of the endophyte below pH 4.5.