Neogene phasianids (Aves: Phasianidae) of Central Asia: 1. Genus <Emphasis Type="Italic">Tologuica</Emphasis> gen. nov.

A new genus, Tologuica, with two species (T. aurorae sp. nov. and T. karhui sp. nov.), from the Middle Miocene of the Sharga locality (western Mongolia) is described. The new genus shares some characters with the extinct genera Palaeocryptonyx, Palaeortyx, and Plioperdix and with extant Coturnix. The foot structure suggests that Tologuica resembled in ecology the European genus Palaeortyx and was probably adapted to an arboreal mode of life, in contrast to the terrestrial Coturnix and Plioperdix.     

Neogene phasianids (Aves: Phasianidae) of Central Asia: 2. Genera <Emphasis Type="Italic">Perdix,Plioperdix</Emphasis>, and <Emphasis Type="Italic">Bantamyx</Emphasis>

The phasianid genera Perdix, Plioperdix, and Bantamyx from the Neogene of Mongolia and Transbaikalia are reviewed. Based on published data and new material, the diagnoses of Late Pliocene Perdix margaritae Kurochkin and Plioperdix ponticus (Tugarinov) and Late Miocene Bantamyx georgicus Kurochkin are emended. It is shown that a tarsometatarsus from the Upper Miocene of the Pavlodar locality belongs to the genus Palaeoperdix rather than Palaeortyx, as was proposed in the previous studies. Small Neogene Asian phasianids are compared in detail with Neogene taxa from Europe and extant genera.     

Phylogenetic relationships of four endemic genera of the Phasianidae in China based on mitochondrial DNA control-region genes

The taxonomic status of some genera within the Phasianidae remains controversial. To demonstrate the phylogenetic relationships of four endemic genera (Tetraophasis, Ithaginis, Crossoptilon and Chrysolophus) and other 11 genera of Phasianidae in China, a total of 1070 nucleotides of mitochondrial DNA (mtDNA) control-region genes were sequenced. There are 376 variable sites including 345 parsimony sites. The genetic distance ranged from 0.067 (Chrysolophus and Phasianus) to 0.181 (Perdix and Bambusicola) among the 15 genera. Maximum likelihood method was used to construct a phylogenetic tree, which grouped all the genera into two deeply divergent clades. Perdix was shown to be a non-partridge genus. Alternatively, it appears ancestral to either partridges or pheasants. The sibling taxa of the four endemic genera were Lophophorus, Tragopan, Lophura and Phasianus, respectively. Calibrated rates of molecular evolution suggested that the divergence time between the four genera and related taxa was 4.00–5.00 million years ago, corresponding to the Pliocene. Considering their molecular phylogenetics, fossil and geographical distribution patterns, the four endemic genera might have originated in the southwestern mountains in China.     

Phylogenetic position of the genus Tetraophasis (Aves, Galliformes, Phasianidae) as inferred from mitochondrial and nuclear sequences

The genus Tetraophasis is endemic to China and the systematic relationships of the genus in Phasianidae based solely on their morphology are not clear. The phylogenetic position of this genus and other genera in Phasianidae was investigated in this study using the mitochondrial genes cytochrome b (CYT B), NADH dehydrogenase subunit 2 (ND2) and nuclear ovomucoid intron G (OVO-G). Maximum parsimony, Bayesian and maximum likelihood analyses were employed. Comparison between the mitochondrial and nuclear findings suggested that our final combined data had higher resolving power than the separate data. Both separate data and combined data yielded a sister relationship between Tetraophasis and Lophophorus with strong support, which provided new evidence that pheasants and partridges were not monophyletic. In addition, our results indicated a basal position of Ithaginis, but the position of Perdix and Pucrasia were still unresolved. The result of this study provided a phylogenetic background for a revised classification of Galliformes.     

Behaviour of Malay peacock pheasant Polyplectron malacense (Aves: Phasianidae)

The breeding behaviour of Malaysian peacock pheasants Polyplectron malacense was studied in West Malaysian rain forest. Males maintained territories, within which some called from cleaned display areas. There were calling interactions between males but no stable dominance hierarchy. Females approached calling males at these display areas for mating. There were year to year variations in males' behaviour, apparently related to the food supply, and it is suggested that food levels may shift the balance between alternative mating strategies.     

Phylogenetic systematics of Colotis and associated genera (Lepidoptera: Pieridae): evolutionary and taxonomic implications

We investigated the genetic diversity and phylogenetic placement of the butterflies in the genus Colotis and eight related pierid genera using sequence information from two mitochondrial and two nuclear genes. To establish the status of species, we initially barcoded 632 specimens representative of all genera and most species and subspecies in those genera. A subset was then selected for phylogenetic analysis where additional gene regions were sequenced: 16S rRNA (523 bp), EF‐1α (1126 bp) and wg (404 bp). DNA barcode results were largely congruent with the traditional classification of species in the Colotis group, but deep splits or lack of genetic divergence in some cases supported either species‐level differentiation or synonymy. Despite using information from four genes, the deeper nodes in our phylogeny were not strongly supported, and monophyly of the ‘Colotis group’ and the genera Colotis and Eronia could not be established. To preserve the monophyly of Colotis, we revive the genus Teracolus for three outlying species previously in Colotis (i.e. Colotis eris, Colotis subfasciatus and Colotis agoye), as well as the genus Afrodryas for Eronia leda. The position of Calopieris is unresolved although it appears to be well outside the molecular variation in Colotis (s.l.). A dispersal/vicariance analysis suggested that major diversification in Colotis (s.str.) occurred in Africa with subsequent dispersal to India and Madagascar.     

Sexual selection and the mating system of Argusianus argus (Aves: Phasianidae)

A study of the Great Argus pheasant Argusianus argus is described. Cleared display sites are owned each by a single male which calls to attract females, while other adult and subadult males maintain no such sites. Evidence is presented to show that vocal differences between males at display sites are slight and unstable, and are therefore unlikely to be used by females in mate choice. No evidence was obtained to suggest that females wander from display site to site and mate with the best male chosen by visual comparison of subtle plumage variation, although the classical assumption has been that such choice accounts for the evolution of the males' extravagant plumage. Females may by chance meet males without display sites at random in the forest, but the displays of such males are probably insufficiently stimulating to induce the female to copulate. Choice between males with or without display sites, on gross plumage and display differences, provides an alternative explanation for the evolution of the males' plumage.     

Phylogenetic relationships of fantails (Aves: Rhipiduridae)

We explore the phylogenetic relationships of fantails (Aves: Rhipiduridae) using molecular characters derived from two nuclear introns and two mitochondrial genes. Our results indicate that Rhipidura hypoxantha is not a true fantail, but rather a member of the Stenostiridae clade that is morphologically and behaviourally convergent with fantails. Within the true Rhipiduridae, we identified six distinct clades; however, phylogenetic relationships among these groups were unresolved. The only well-supported sister relationship was between members of the grey and the rufous fantail complexes. Clades recovered through our model-based phylogenetic analyses generally correspond to previously proposed fantail complexes based on morphological characters. The phylogenetic position of R. atra and R. diluta remain unclear, as sister relationships varied between analyses for the prior whereas the latter was placed as sister to the New Guinea thicket fantails, R. leucothorax and R. threnothorax ; yet significant node support was not recovered for either taxa. Biogeographically, fantails appear to have radiated rapidly and the six clades are not geographically restricted, but instead span South-east Asia, New Guinea, Australia and Pacific Islands.     

Phylogenetic relationships of the genera Arthroderma and Nannizzia inferred from mitochondrial DNA analysis

The phylogenetic relationship of the genera Arthroderma and Nannizzia, was investigated by mitochondrial DNA analysis based on the restriction-fragment-length polymorphisms. Phylogenetic trees made on ten species. A. benhamiae, A. insingulare, A. quadrifidum, A. simii, A. vanbreuseghemii, N. fulva, N. grubyia, N. gypsea, N. incurvata and N. otae showed no definite distinctions between the genera Arthroderma and Nannizzia. These results support the conclusion of Weitzman et al. that the genera Arthroderma and Nannizzia are congeneric.     

Caprinae (Bovidae,Artiodactyla, Mammalia) from the Neogene of Mongolia

Gobiocerus mongolicus Sokolov, 1952, Turcocerus kekemaidengensis Ye Jie et al., 1999; and Hypsodontus sp. were recorded in Miocene deposits of the Valley of Lakes (MN4-MN8) and Oioceros atropatenes (Rodler et Weithofer, 1890) occurred in the Mio-Pliocene (MN11-MN20) of northwestern Mongolia. Gobiocerus, Turcocerus, and Hypsodontus represent the same evolutionary lineage. Thus, Caprinae existed in Central Asia in the Early Miocene. They diverged from the Bovidae at the Oligocene-Miocene boundary. The presence of early bovids in this region suggests that this group could have appeared in Central Asia.     

A new genus and four new species of quill mites (Acari: Prostigmata: Syringophiudae) from phasianid birds (Galuformes: Phasianidae)

A new genus and four new species of the quill mites are described. Galliphilopsis gen. n. (G. francolinus sp. n., type species) differs from the closely related Dissonus Skoracki, 1999 by loss of leg setae dGII, the slightly divergent tips of epimeres I and the stylophore constricted posteriorly. Three new species of the genus Galliphilopsis gen. n. and one new species of the genus Mironovia Chirov and Kravtsova, 1995 are described from galliform birds (Phasianidae) collected at the Museum of Natural History, Wroclaw University (Poland): G. lophurus sp. n. from Lophura leucomelanos, G. bochkovi sp. n. from Tragopan sp. and Alectoris barbara, G. francolinus sp. n. from Francolinus levalliantoides, and Mironovia rouloul sp. n. from Rollulus rouloul.     

Phylogenetic analysis of Nosema antheraeae (Microsporidia) isolated from Chinese oak silkworm, Antheraea pernyi

The microsporidian Nosema antheraeae is a pathogen that infects the Chinese oak silkworm, Antheraea pernyi. We sequenced the complete small subunit (SSU) rRNA gene and the internal transcribed spacer (ITS) of N. antheraeae, and compared the SSU rRNA sequences in other microsporidia. The results indicated that Nosema species, including N. antheraeae, formed two distinct clades, consistent with previous observations. Furthermore, N. antheraeae is clustered with N. bombycis with high bootstrap support. The organization of the rRNA gene of N. antheraeae is LSU-ITS1-SSU-ITS2-5S, also following a pattern similar to the Nosema type species, N. bombycis. Thus, N. antheraeae is a Nosema species and has a close relationship to N. bombycis.     

Phylogenetic relationships of the mockingbirds and thrashers (Aves: Mimidae)

The mockingbirds, thrashers and allied birds in the family Mimidae are broadly distributed across the Americas. Many aspects of their phylogenetic history are well established, but there has been no previous phylogenetic study that included all species in this radiation. Our reconstructions based on mitochondrial and nuclear DNA sequence markers show that an early bifurcation separated the Mimidae into two clades, the first of which includes North and Middle American taxa (Melanotis, Melanoptila, Dumetella) plus a small radiation that likely occurred largely within the West Indies (Ramphocinclus, Allenia, Margarops, Cinclocerthia). The second and larger radiation includes the Toxostoma thrasher clade, along with the monotypic Sage Thrasher (Oreoscoptes) and the phenotypically diverse and broadly distributed Mimus mockingbirds. This mockingbird group is biogeographically notable for including several lineages that colonized and diverged on isolated islands, including the Socorro Mockingbird (Mimus graysoni, formerly Mimodes) and the diverse and historically important Galapagos mockingbirds (formerly Nesomimus). Our reconstructions support a sister relationship between the Galapagos mockingbird lineage and the Bahama Mockingbird (M. gundlachi) of the West Indies, rather than the Long-tailed Mockingbird (M. longicaudatus) or other species presently found on the South American mainland. Relationships within the genus Toxostoma conflict with traditional arrangements but support a tree based on a preivous mtDNA study. For instance, the southern Mexican endemic Ocellated Thrasher (T. ocellatum) is not an isolated sister species of the Curve-billed thrasher (T. curvirostre).     

Phylogenetic relationships of vespertilionid genera (Mammalia: Chiroptera) as revealed by karyological analysis

Banded karyotypes of 50 species belonging to 23 genera were analyzed. The diploid chromosome numbers ranged from 26 to 50. For karyotypic comparison we used a 44 chromosomes karyotype, consisting of 4 metacentric and 17 acrocentric autosomes, as “basic karyotype”. Almost all of its 25 autosomal arms could be identified in each individual karyotype. In 8 chromosomes, i. e. 1/2, 7, 11, 12, 13, 15, 23 and X, small inversions were detected. As a result, each of the chromosomes mentioned occurs in two states which differ slightly in their banding patterns. These were used as character states in the cladistic analysis together with other chromosomal rearrangements. The implications drawn from the cladogram obtained are: The Miniopterinae clearly belong to the Vespertilionidae but are the first to branch off from the common stem. The tribe Myotini should be raised to the rank of a subfamily. Within the largest subfamily Vespertilioninae, one autapomorphic chromosomal character was found for each of the tribes Vespertilionini and Pipistrellini. In addition, both tribes are distinguished from the other Vespertilioninae tribes by two synapomorphic features. These results allow for the first time an unequivocal classification of the systematically difficult “pipistrelloid” species. The species of the genus Pipistrellus (sensu Hill and Harrison 1987) are spread over the Pipistrelllni and Vespertilionini. We therefore suggest the splitting of this heterogenous genus into at least four genera. Only the members of the previous subgenus Pipistrellus constitute the genus Pipistrellus and belong to the Pipistrellini. The previous subgenera Hypsugo, Vespadelus and Falsistrellus, given generic rank in some recent studies, belong to the tribe Vespertilionini and are not closely related to Pipistrellus. For the genera Eptesicus and Hesperoptenus, which belong neither to the Vespertilionini nor to the Pipistrellini, the tribe Eptesicini was established. The phylogenetic relations of this tribe and the status of the presumably polyphyletic tribe “Nycticeiini” could not be solved.     

CR1 retroposons provide a new insight into the phylogeny of Phasianidae species (Aves: Galliformes)

Chicken repeat 1 (CR1) elements, a class of retroposons belonging to non-long-terminal repeats, have been recognized as powerful tools for phylogenetic studies. Here we examine the phylogenetic relationships of 11 Phasianidae species based on CR1 retroposons. Together with 19 loci reported previously, a total of 99 CR1 loci were identified from chicken genome and turkey BAC clone sequences. 75 insertion events were used to address the branching order of 11 species in Phasianidae. The topology of our tree suggests that: 1) Gallus gallus possessed a basal phylogenetic position within Phasianidae and was related to Bambusicola thoracica (BSP=100%); 2) After the split of G. gallus and B. thoracica, Arborophila rufipectus diverged from Phasianidae (BSP=100%). Nine unambiguous insertion events supported a phylogenetic position of A. rufipectus different to previous mitochondrial data suggesting a hybrid origin or an ancient introgression of A. rufipectus; and 3) 22 CR1 insertion events strongly supported the eight phasianids under investigation sharing a common ancestor. Our study has revisited the phylogenetic position of G. gallus and A. rufipectus and provided a new insight into the phylogeny of Phasianidae birds. It showed that a CR1-based methodology has a great potential to be informative within Phasianidae in resolving relationships of closely related species whose radiation and speciation have occurred very recently.     

Phylogenetic analysis of genera of ‘Akanthophoreinae’ (Crustacea: Tanaidacea)

Phylogenetic relations among tanaidacean genera within ‘Akanthophoreinae’ are addressed using computer-assisted parsimony methods. The morphology-based analysis includes 10 well-defined and described genera: Araphura, Chauliopleona, Collettea, Paragathotanais, Metagathotanais, Paraleptognathia, Paranarthrura, Portaratrum, and Tanaella in Tanaidomorpha, and Glabroapseudes in Apseudomorpha as the outgroup. Chauliopleona and Paraleptognathia form a monophylum; Portaratrum cannot be placed in any known family. These three genera are considered as incertae sedis. The analysis does not support the monophyly of ‘Akanthophoreinae’, and further questions the monophyly of Tanaellidae.     

Phylogenetic relationships among Lactuca (Asteraceae) species and related genera based on ITS-1 DNA sequences

Internal transcribed spacer (ITS-1) sequences from 97 accessions representing 23 species of Lactuca and related genera were determined and used to evaluate species relationships of Lactuca sensu lato (s.l.). The ITS-1 phylogenies, calculated using PAUP and PHYLIP, correspond better to the classification of Feráková than to other classifications evaluated, although the inclusion of sect. Lactuca subsect. Cyanicae is not supported. Therefore, exclusion of subsect. Cyanicae from Lactuca sensu Feráková is proposed. The amended genus contains the entire gene pool (sensu Harlan and De Wet) of cultivated lettuce (Lactuca sativa). The position of the species in the amended classification corresponds to their position in the lettuce gene pool. In the ITS-1 phylogenies, a clade with L. sativa, L. serriola, L. dregeana, L. altaica, and L. aculeata represents the primary gene pool. L. virosa and L. saligna, branching off closest to this clade, encompass the secondary gene pool. L. virosa is possibly of hybrid origin. The primary and secondary gene pool species are classified in sect. Lactuca subsect. Lactuca. The species L. quercina, L. viminea, L. sibirica, and L. tatarica, branching off next, represent the tertiary gene pool. They are classified in Lactuca sect. Lactucopsis, sect. Phaenixopus, and sect. Mulgedium, respectively. L. perennis and L. tenerrima, classified in sect. Lactuca subsect. Cyanicae, form clades with species from related genera and are not part of the lettuce gene pool.     

Out of Africa? Phylogenetic relationships between Falco biarmicus and the other hierofalcons (Aves: Falconidae)

The phylogeographic history of the lanner falcon ( Falco biarmicus ) and the phylogenetic relationships among hierofalcons ( F. biarmicus , Falco cherrug , Falco jugger and Falco rusticolus ) were investigated using mitochondrial (mt) DNA sequences. Of the two non-coding mt sections tested, the control region (CR) appeared more suitable as phylogenetic marker sequence compared with the pseudo control region (ΨCR). For the comprehensive analysis samples from a broad geographic range representing all four hierofalcon species and their currently recognized subspecies were included. Moreover, samples of Falco mexicanus were analysed to elucidate its phylogenetic relationships to the hierofalcons. The sequence data indicate that this species is more closely related to Falco peregrinus than to the hierofalcons. In the DNA-based trees and in the maximum parsimony network all hierofalcons appear closely related and none of the species represents a monophyletic group. The close relationships among haplotypes suggest that the hierofalcon complex is an assemblage of morphospecies not yet differentiated in the genetic markers used in the present study and that the radiation of the four hierofalcon species took place rather recently. Based on the high intraspecific diversity found within F. biarmicus we assume an African origin of the hierofalcon complex. The observed pattern of haplotype distribution in the extant species may be due to incomplete lineage sorting of ancestral polymorphisms, and interspecific gene flow through hybridization.     

Phylogenetic taxonomy of Hymenochaete and related genera (Hymenochaetales)

Species delimitation in Hymenochaete sensu lato was evaluated based on partial nucLSU rDNA sequences, isoenzyme analyses and morphological data. Analyses of LSU data revealed Hymenochaete sensu stricto and Pseudochaete as distinct monophyletic genera. Transfer of Hydnochaete olivacea into genus Pseudochaete and Dichochaete setosa into genus Hymenochaete (as H. resupinata) was supported by the results of molecular analyses. A new species Hymenochaete koeljalgii from Tanzania was described. The species of genus Hymenochaete sensu stricto were divided into four well-supported clades possessing no distinctive morphological characters.