COMPARISON OF SIMPLE AND MULTIMETRIC DIATOM‐BASED INDICES FOR GREAT LAKES COASTLINE DISTURBANCE1

Because diatom communities are subject to the prevailing water quality in the Great Lakes coastal environment, diatom‐based indices can be used to support coastal‐monitoring programs and paleoecological studies. Diatom samples were collected from Great Lakes coastal wetlands, embayments, and high‐energy sites (155 sites), and assemblages were characterized to the species level. We defined 42 metrics on the basis of autecological and functional properties of species assemblages, including species diversity, motile species, planktonic species, proportion dominant taxon, taxonomic metrics (e.g., proportion Stephanodiscoid taxa), and diatom‐inferred (DI) water quality (e.g., DI chloride [Cl]). Redundant metrics were eliminated, and a diatom‐based multimetric index (MMDI) to infer coastline disturbance was developed. Anthropogenic stresses in adjacent coastal watersheds were characterized using geographic information system (GIS) data related to agricultural and urban land cover and atmospheric deposition. Fourteen independent diatom metrics had significant regressions with watershed stressor data; these metrics were selected for inclusion in the MMDI. The final MMDI was developed as the weighted sum of the selected metric scores with weights based on a metric’s ability to reflect anthropogenic stressors in the adjacent watersheds. Despite careful development of the multimetric approach, verification using a test set of sites indicated that the MMDI was not able to predict watershed stressors better than some of the component metrics. From this investigation, it was determined that simpler, more traditional diatom‐based metrics (e.g., DI Cl, proportion Cl‐tolerant species, and DI total phosphorus [TP]) provide superior prediction of overall stressor influence at coastal locales.     

Comparison of two methods for quality assessment of macroalgae assemblages,under different pollution types

The selection of adequate methodologies for the assessment of different biological quality elements is urgently needed for the application of the water framework directive (WFD 2000/60/EEC). In the case of macroalgae in coastal waters of the North East Atlantic, two methodologies have been proposed: the reduced species list (RSL) index and the quality of rocky bottoms (CFR) index. Both methods use multimetric approaches to evaluate the quality of macroalgae assemblages, which are based on community characteristics (species/populations richness, cover, percentage of opportunistic species, ecological state groups ratio, etc.). In this paper the results of applying both indices on three different types of pollution gradients in the North coast of Spain (bay of Biscay) are presented, in order to test their usefulness and intercalibration possibilities. In general terms, the CFR index responded more accurately than the RSL index to the pollution gradients under study. With respect to the indicators used in the current evaluation, richness, opportunistic species and cover seemed to be the most accurate for quality assessment of macroalgal communities. While the first two indicators are taken into account in both indices, the latter (cover) is only considered in the CFR index, even though the abundance of macroalgae is one of the aspects to be included in the evaluation of this biological element, according to the WFD.     

Ecological assessment of soft bottom benthic communities in northern Spanish estuaries

The implementation of the Water Framework Directive requires the classification of the ecological quality status of benthic macroinvertebrates in costal and transitional waters. The uncertainty and complexity of this task have lead to the creation of specific Geographical Intercalibration Groups (GIGs) for the different ecoregions and types of water bodies established. In this framework, several metrics are under study in the United Kingdom, Spain and Denmark for North East Atlantic coastal waters (NEA-GIG). All of them include in their formulations the AMBI index. Nevertheless, few advances have been made in relation to transitional waters. This paper aims to test the suitability of those methodological procedures for their application in Northern Spanish estuaries. The results show evident divergences in classification of ecological status among methods, although the correlations of corresponding ecological quality ratios (EQRs) are good. Thus, we think that it may be necessary to modify the boundaries between each ecological status category and adjust the reference conditions for the variety of community-types existing in estuarine water bodies. However, some problems arise in the assessment of some naturally stressed communities. In this situation, we found an overall dominance of species tolerant to organic enrichment in all status categories and low range of variation of AMBI index. This aspect introduces some uncertainty in relation to the ability of this index to detect a deleterious effect in these estuarine communities naturally stressed. On the other hand, we found some sites that achieve good status according to the metrics used, even though the number of opportunistic species was high. The use of combined approaches that incorporate physicochemical condition of sediments would be a straightforward approach to reduce the risk of failing in the assignation of ecological status category.     

Macroalgae,a suitable indicator of the ecological status of coastal rocky communities in the NE Atlantic

Despite the great importance of shallow rocky communities (<30 m deep) due to their contribution to the biodiversity of coastal waters, most efforts in ecological status assessment of marine waters have been carried out in the implementation of soft bottom biotic indices. Therefore, in this paper, a methodology for the environmental evaluation of coastal rocky communities for the Bay of Biscay (NE Atlantic), the CFR index (Quality of Rocky Bottoms), is presented. This index is based on the analysis of seaweed communities throughout the depth gradient, from the intertidal to the shallow subtidal, through the combination of a multimetric approach, which combines the richness of characteristic macroalgae populations, their total cover, the presence of opportunistic species and the physiological condition of the whole macroalgae community. Quality thresholds for these indicators are based on both ecological data and expert judgment. Finally, a preliminary application of this metric to sites with theoretically good and bad environmental conditions is used to analyze the suitability of the index. As a result, the four selected indicators responded in a significant way to the pressure gradient tested, proving to be appropriate for the type of pressure analysed and obtaining coherent results in the final quality assessment with the CFR index. In conclusion, the CFR index has proved to be an effective tool for the assessment of the ecological quality of coastal rocky communities, based on the analysis of macroalgae assemblages.     

Detecting benthic community differences: Influence of statistical index and season

An accurate assessment of estuarine condition is critical to determining whether there has been a change from baseline or ‘natural’ conditions; benthic communities are routinely used as an ecological endpoint to make this assessment. We addressed two issues, which arise when attempting to detect differences between benthic communities. The first is the varying sensitivity of metrics, e.g. one metric may not be able to detect differences between two communities where another metric can. The second is the influence of season on the detection of differences between benthic communities from different estuarine systems. In this study, benthic communities taken from depositional sites were sampled in three seasons, at three sites within two relatively pristine estuaries located in southern Massachusetts, USA. Statistical comparisons of benthic community data from the two estuaries were made using three common metrics: species richness, Shannon diversity and Bray–Curtis similarity indices. Significant community differences were found depending upon the index. The Bray–Curtis index, using permutation testing, was the only metric that detected differences between estuaries despite disparate seasonal sampling. This suggests that researchers do not need to be overly constrained to sampling in the same season when testing for differences in benthic communities between estuaries. Additionally, we propose an analytical method to identify anthropogenically impacted estuarine systems.     

A multimetric diatom index to assess the ecological status of coastal Galician rivers (NW Spain)

There are many rivers in northwest Spain as a consequence of the mountainous landscape and the granitic geology subjected to Atlantic influences. Water and epilithic diatoms samples were collected at 72 sites in Galicia flowing into the Atlantic Ocean and Cantabrian Sea in summer 2002–2003 and spring 2004. These sites included minimally disturbed sites, defined as reference sites, and impacted sites which were influenced by different human pressures. We used the diatom assemblages to calculate diatom indices using the Omnidia software, but we also developed new metrics based on the similarity of species composition in reference sites. The response of the metrics was tested in relation to physicochemical variables. We developed a diatom multimetric index (MDIAT) as a combination of metric values. The sensitivity of the MDIAT to organic and nutrient stressors supports the use of this index to classify the ecological status of Galician rivers. The MDIAT showed higher correlations with some variables and nutrients than the individual metrics. According to the MDIAT, 69% of the sites sampled in Galician coastal rivers achieve good ecological status. The MDIAT has been developed specifically for Galician granitic rivers (NW Spain), and has been intercalibrated at the European level in the Central Baltic Rivers GIG. Our study validates the application of this multimetric index to evaluate the water quality in coastal Galician rivers.     

Use of low-budget monitoring of macroalgae to implement the European Water Framework Directive

Benthic macroalgal communities constitute one of the ecological quality elements needed to implement the Water Framework Directive (2000/60/EC), the legislation targetted at sustainable management of the European aquatic environment. As the Directive foresees the establishment of Ecological Status Class boundaries and Reference Conditions in coastal waters, a study was conducted on the Attica coast of Greece to identify the best method to use macroalgal community data for evaluating ecological quality and at the same time keep the program within a low budget. Six seasonal quantitative and qualitative samples were taken from the upper infralittoral macroalgal communities on the Attica coast of Greece on six occasions between summer 1998 and spring 2002; these sites, which reflect a gradient of anthropogenic perturbation, were used on each occasion. A list of 60 macroalgal taxa was prepared, the cover value of each taxon was measured and the structure of the vegetation was described. The use of four different indices (Shannon-Weaver index, Pielou evenness, Multi-Dimensional Scaling plot of Bray-Curtis similarity, Ecological Evaluation index-EEI) were compared. The multidimensional scaling of Bray-Curtis similarity and the EEI were better at indicating the perturbation pattern of the study area. However, only the EEI succeeded in distinguishing four quality classes (‘low’ to ‘high’). By using EEI, a spatial scale-weighted evaluation of ecological quality was also performed. This revised version was published online in August 2006 with corrections to the Cover Date.     

Light Limitation within Southern New Zealand Kelp Forest Communities

Light is the fundamental driver of primary productivity in the marine environment. Reduced light availability has the potential to alter the distribution, community composition, and productivity of key benthic primary producers, potentially reducing habitat and energy provision to coastal food webs. We compared the underwater light environment of macroalgal dominated shallow subtidal rocky reef habitats on a coastline modified by human activities with a coastline of forested catchments. Key metrics describing the availability of photosynthetically active radiation (PAR) were determined over 295 days and were related to macroalgal depth distribution, community composition, and standing biomass patterns, which were recorded seasonally. Light attenuation was more than twice as high in shallow subtidal zones along the modified coast. Macroalgal biomass was 2–5 times greater within forested sites, and even in shallow water (2m) a significant difference in biomass was observed. Long-term light dose provided the best explanation for differences in observed biomass between modified and forested coasts, with light availability over the study period differing by 60 and 90 mol photons m⁻² at 2 and 10 metres, respectively. Higher biomass on the forested coast was driven by the presence of larger individuals rather than species diversity or density. This study suggests that commonly used metrics such as species diversity and density are not as sensitive as direct measures of biomass when detecting the effects of light limitation within macroalgal communities.     

Abrolhos bank reef health evaluated by means of water quality, microbial diversity, benthic cover, and fish biomass data

The health of the coral reefs of the Abrolhos Bank (Southwestern Atlantic) was characterized with a holistic approach using measurements of four ecosystem components: (i) inorganic and organic nutrient concentrations, [1] fish biomass, [1] macroalgal and coral cover and (iv) microbial community composition and abundance. The possible benefits of protection from fishing were particularly evaluated by comparing sites with varying levels of protection. Two reefs within the well-enforced no-take area of the National Marine Park of Abrolhos (Parcel dos Abrolhos and California) were compared with two unprotected coastal reefs (Sebasti?o Gomes and Pedra de Leste) and one legally protected but poorly enforced coastal reef (the "paper park" of Timbebas Reef). The fish biomass was lower and the fleshy macroalgal cover was higher in the unprotected reefs compared with the protected areas. The unprotected and protected reefs had similar seawater chemistry. Lower vibrio CFU counts were observed in the fully protected area of California Reef. Metagenome analysis showed that the unprotected reefs had a higher abundance of archaeal and viral sequences and more bacterial pathogens, while the protected reefs had a higher abundance of genes related to photosynthesis. Similar to other reef systems in the world, there was evidence that reductions in the biomass of herbivorous fishes and the consequent increase in macroalgal cover in the Abrolhos Bank may be affecting microbial diversity and abundance. Through the integration of different types of ecological data, the present study showed that protection from fishing may lead to greater reef health. The data presented herein suggest that protected coral reefs have higher microbial diversity, with the most degraded reef (Sebasti?o Gomes) showing a marked reduction in microbial species richness. It is concluded that ecological conditions in unprotected reefs may promote the growth and rapid evolution of opportunistic microbial pathogens.     

An application of canonical correspondence analysis for developing ecological quality assessment metrics for river macrophytes

1. Aquatic macrophyte composition and abundance is required by the European Union's Water Framework Directive for determining ecological status. Five metrics were produced that can be combined to determine the deviation of aquatic macrophytes from reference conditions in Northern Ireland's rivers. 2. Species optima and niche breadths along silt, nitrate, pH, conductivity and dissolved oxygen gradients were generated from aquatic macrophyte and water quality surveys conducted at 273 sites throughout Northern Ireland using Canonical Correspondence Analysis (CCA). Five metric scores based on these environmental gradients were determined at new monitoring sites using the mean optima of the species occurring at the site, weighted by percentage cover and niche breadth of each species. 3. A preliminary reference network of 32 sites of high physico‐chemical and hydromorphological quality, and representative of the range of river types in Northern Ireland, enabled reference metric scores to be produced for each river type. Five unimpacted and twenty impacted sites were used for testing the performance of the metrics. By subtracting reference metric scores from metric scores at a monitoring site measures of ecological impact could be determined along five different impact gradients. Metrics were also combined to give a measure of total ecological change. 4. The metrics system distinguished unimpacted from impacted sites and correctly identified 77% of the known impacts. The metrics distinguished different types of impact, e.g. silt and nitrate. 5. Aquatic macrophyte occurrence and abundance has high natural variability at a site, both temporally and spatially. This method was designed to be sensitive to ecological change whilst reducing noise caused by natural variation.     

The impact of human pressure on landscape patterns and plant species richness in Mediterranean coastal dunes

We analyze the spatial patterns of natural dune cover patches and their plant richness, comparing coastal sites with different levels of human pressure in central Italy. We created a detailed land cover map of dune sites. The spatial pattern of natural dune cover types was characterized by computing a set of patch-based metrics. To quantify patch plant richness, we used 16 m² vegetation plots, randomly distributed on coastal dune cover types. For each patch, the richness of the entire pool of species and of three guilds (i.e., typical dune, ruderal, and alien species) was considered. We compared different levels of human pressure on coastal dunes focusing on pattern metrics and floristic information by using the nonparametric Kruskal–Wallis test. In sites with high human pressure, we have observed a general simplification in the natural dune spatial pattern and a decline of plant richness but with a specific response for each cover type. Alien and ruderal species presented low richness in all patches. In coastal dunes, the harsh ecological conditions and the strong sea–inland gradient shape the distribution of human activities and control the number of ruderal species. The approach effectively describes fragmentation and biodiversity in dune ecosystems.     

A multi‐metric fish index to assess the environmental condition of estuaries

The development of a multi‐metric fish index, the Estuarine Fish Community Index (EFCI), for assessing estuarine environments is described. The index comprises 14 metrics or measures that represent four broad fish community attributes: species diversity and composition, species abundance, nursery function and trophic integrity. The individual metrics were evaluated using data that were collected on a South African estuary that was degraded and in which rehabilitation measures were implemented. The evaluation suggested that the selected metrics adequately measure the condition of separate but related components of estuarine fish communities and that these reflect environmental condition. Reference conditions and metric thresholds were derived from fish community data collected during an extensive national study. The final multi‐metric index was then constructed and evaluated. The EFCI combines both structural and functional attributes of estuarine fish communities and integrates these to provide both a robust and sensitive method for assessing the ecological condition of estuarine systems. It is also an effective communication tool for converting ecological information into an easily understood format for managers, policy makers and the general public.     

Spatial and temporal variability in macroalgal blooms in a eutrophied coastal estuary

All three macroalgal clades (Chlorophyta, Rhodophyta, and Phaeophyceae) contain bloom-forming species. Macroalgal blooms occur worldwide and have negative consequences for coastal habitats and economies. Narragansett Bay (NB), Rhode Island, USA, is a medium sized estuary that is heavily influenced by anthropogenic activities and has been plagued by macroalgal blooms for over a century. Over the past decade, significant investment has upgraded wastewater treatment from secondary treatment to water-quality based limits (i.e. tertiary treatment) in an effort to control coastal eutrophication in this system. The goal of this study was to improve the understanding of multi-year macroalgal bloom dynamics through intensive aerial and ground surveys conducted monthly to bi-monthly during low tides in May–October 2006–2013 in NB. Aerial surveys provided a rapid characterization of macroalgal densities across a large area, while ground surveys provided high resolution measurements of macroalgal identity, percent cover, and biomass.Macroalgal blooms in NB are dominated by Ulva and Gracilaria spp. regardless of year or month, although all three clades of macroalgae were documented. Chlorophyta cover and nutrient concentrations were highest in the middle and upper bay. Rhodophyta cover was highest in the middle and lower bay, while drifting Phaeophyceae cover was patchy. Macroalgal blooms of >1000 g fresh mass (gfm)/m² (max = 3510 gfm/m²) in the intertidal zone and >3000 gfm/m³ (max = 8555 gfm/m³) in the subtidal zone were observed within a heavily impacted embayment (Greenwich Bay). Macroalgal percent cover (intertidal), biomass (subtidal), and diversity varied significantly between year, month-group, site, and even within sites, with the highest species diversity at sites outside of Greenwich Bay. Total intertidal macroalgal percent cover, as well as subtidal Ulva biomass, were positively correlated with temperature. Dissolved inorganic nitrogen concentrations were correlated with the total biomass of macroalgae and the subtidal biomass of Gracilaria spp. but not the biomass of Ulva spp. Despite seasonal reductions in the nutrient output of wastewater treatment facilities emptying into upper Narragansett Bay in recent years, macroalgal blooms still persist. Continued long-term monitoring of water quality, macroalgal blooms, and ecological indicators is essential to understand the changes in macroalgal bloom dynamics that occur after nutrient reductions from management efforts.     

The benthic macro-algae of Georgian Bay,the North Channel and their drainage basin

Thirty-nine subgeneric taxa of macroalgae have been collected from 83 sites in Georgian Bay, the North Channel and their drainage basin. There were 15 species in the Bay and Channel and 32 species in streams, rivers and impoundments in the basin. Only 8 of the Bay and Channel species were also found in the watershed. Cladophora glomerata was the most important species in Georgian Bay and the North Channel, having an estimated 640 × 10³ m² cover and 19 × 10⁴ kg fresh weight standing crop. However, this species was largely concentrated on the southwestern shorelines of these water bodies. Its distribution along the northeastern shoreline appears to be limited by total ion and phosphorus levels. Chara globularis/vulgaris was the subdominant taxon in Georgian Bay and the North Channel with an estimated 70 × 10³ m² cover and 15 × 10³ kg fresh weight biomass. This species was more widely distributed than C. glomerata. No other taxon contributed significantly to the standing crop including the frequently occurring Ulothrix zonata, Zygnema spp. and Spirogyra spp. The maximum benthic macroalgal biomass was estimated to be approximately 10% of the phytoplankton biomass.     

不同底栖生物指数在福建省近岸海域的适用性

将3个底栖生物指数AZTI海洋生物指数(AMBI)、多毛类机会种和端足目动物指数(BOPA)、底栖动物多毛类和端足目指数(BPA)和Shannon多样性指数(H)应用于福建省近岸海域4个典型海湾和1个河口的生态质量评价,评估这4个指数在研究区的适用性.结果表明: 4个指数的评价结果差异较大,评价等级完全相同的站位仅有4个,占总评价站数的8.7%;AMBI将76.1%的站位评价为等级“良”,BOPA将89.1%的站位评价为等级“优”,BPA和H的评价结果等级梯度变化明显;对于海湾,BOPA、BPA和AMBI与营养盐因子活性磷酸盐(DIP)和无机氮(DIN)无显著相关性,不能响应研究区的富营养化压力;而H与DIN呈显著负相关.对于河口,BOPA、BPA和AMBI与DIP和DIN均呈显著正相关,且随着与入海口距离的减小,7个断面生态质量评价等级没有明显变化,不能识别河口高强度的富营养化压力,评价结果偏高;而H与DIN呈显著负相关,且随着与入海口距离的减小,7个断面生态质量评价等级呈现提高的趋势.总体上,BOPA、BPA和AMBI在福建近岸海域的适用性较低,而H更合适该研究区,能够响应研究区主要的环境压力.     

Classification efficiency of the B-IBI comparing water body size classes in Chesapeake Bay

The Benthic Index of Biotic Integrity (B-IBI) was developed and is currently employed for environmental assessment in Chesapeake Bay. The index consists of a variety of benthic community metrics (e.g. abundance, biomass, diversity, stress tolerance groups, etc.) scored by thresholds applied to seven benthic community habitats (tidal freshwater, oligohaline, low mesohaline, high mesohaline mud, high mesohaline sand, polyhaline mud, and polyhaline sand) This index was verified as being a sensitive and robust tool for summarizing the status of benthic communities. In our study we tested the classification efficiency of the index using new benthic data by characterizing each sample a priori as degraded or undegraded using criteria of sediment contaminant levels, bioassays and bottom dissolved oxygen levels. A primary objective of our study was to test the classification efficiency of the B-IBI in small water bodies connected to larger water bodies of the mainstems of the large rivers of Chesapeake Bay, as well as the efficiency of the index over time (1990 through 2009). The B-IBI was affected by the size of the water body, e.g., index accuracy was higher for water bodies in small watersheds in lower salinity habitats, whereas large water bodies of the mainstem of rivers were better classified by the B-IBI in habitats with higher salinities. Across the seven benthic habitat types overall correct classification was moderate to low and lower for correctly classifying undegraded sites. In general the index metrics showed some deficiencies that suggest improvements could be made by recalibrating existing metric thresholds or selecting new suitable metrics.     

Highly predictable photosynthetic production in natural macroalgal communities from incoming and absorbed light

Photosynthesis–irradiance relationships of macroalgal communities and thalli of dominant species in shallow coastal Danish waters were measured over a full year to test how well community production can be predicted from environmental (incident irradiance and temperature) and community variables (canopy absorptance, species number and thallus metabolism). Detached thalli of dominant species performed optimally at different times of the year, but showed no general seasonal changes in photosynthetic features. Production capacity of communities at high light varied only 1.8-fold over the year and was unrelated to incident irradiance, temperature and mean thallus photosynthesis, while community absorptance was a highly significant predictor. Actual rates of community photosynthesis were closely related to incident and absorbed irradiance alone. Community absorptance in turn was correlated to canopy height and species richness. The close relationship of community photosynthesis to irradiance is due to the fact that (1) large differences in thallus photosynthesis of individual species are averaged out in communities composed of several species, (2) seasonal replacement of species keeps communities metabolically active, and (3) maximum possible absorptance at 100% constrains the total photosynthesis of all species. Our results imply that the photosynthetic production of macroalgal communities is more predictable than their complex and dynamic nature suggest and that predictions are possible over wide spatial scales in coastal waters by measurements of vegetation cover, incoming irradiance and canopy absorptance.     

Variable Responses of Benthic Communities to Anomalously Warm Sea Temperatures on a High-Latitude Coral Reef

High-latitude reefs support unique ecological communities occurring at the biogeographic boundaries between tropical and temperate marine ecosystems. Due to their lower ambient temperatures, they are regarded as potential refugia for tropical species shifting poleward due to rising sea temperatures. However, acute warming events can cause rapid shifts in the composition of high-latitude reef communities, including range contractions of temperate macroalgae and bleaching-induced mortality in corals. While bleaching has been reported on numerous high-latitude reefs, post-bleaching trajectories of benthic communities are poorly described. Consequently, the longer-term effects of thermal anomalies on high-latitude reefs are difficult to predict. Here, we use an autonomous underwater vehicle to conduct repeated surveys of three 625 m² plots on a coral-dominated high-latitude reef in the Houtman Abrolhos Islands, Western Australia, over a four-year period spanning a large-magnitude thermal anomaly. Quantification of benthic communities revealed high coral cover (>70%, comprising three main morphospecies) prior to the bleaching event. Plating Montipora was most susceptible to bleaching, but in the plot where it was most abundant, coral cover did not change significantly because of post-bleaching increases in branching Acropora. In the other two plots, coral cover decreased while macroalgal cover increased markedly. Overall, coral cover declined from 73% to 59% over the course of the study, while macroalgal cover increased from 11% to 24%. The significant differences in impacts and post-bleaching trajectories among plots underline the importance of understanding the underlying causes of such variation to improve predictions of how climate change will affect reefs, especially at high-latitudes.