Seasonal and reciprocal succession and cyclomorphosis of two Bosmina species (Cladocera, Crustacea) co-existing in a lake: their relationship with invertebrate predators

The seasonal succession and cyclomorphosis of Bosmina longirostrisand Bosmina fatalis (also known as Sinobosmina fatalis) wereinvestigated in the shallow eutrophic Lake Suwa from 1996 to1999. Two different invertebrate predators, cyclopoid copepodsand Leptodora kindtii, co-existed with Bosmina in the lake.A pattern of seasonal succession of the two species was apparent,with B. fatalis dominant in summer and B. longirostris in springand fall. The two species also showed different seasonal changesin morphology. During summer, when the density of the invertebratepredator Leptodora was high, B. fatalis changed its morphologyand maintained long features, with elongation of the antennulesand mucrones. This species also maintained the protruding shapeof the antennules by increasing the angles between the antennulesand the body, and between two antennules, during the same period.The seasonal differences and magnitude of changes in morphologywere more marked for larger individuals. However, such markeddevelopment of protruding structures was not observed in B.longirostris, which showed only slight changes in the antennuleand mucrone lengths related to the density of copepods. Theresults suggest that the morphological traits of B. fatalisare a morphological defence against Leptodora, while those ofB. longirostris are a response to copepods. In Lake Suwa, thepredators show different patterns of seasonal changes in density.Different morphological traits and the resulting interactionswith invertebrate predators seem to be important in determiningthe reciprocal succession of the two Bosmina species.     

Seasonal changes of Bosmina (Crustacea, Cladocera) in Frains Lake, Michigan: laboratory observations of phenotypic changes induced by inorganic factors

In Frains Lake, individuals of the species Bosmina longirostris decrease relative mucro and antennule lengths during the spring and summer, and increase them again during the fall. The cyclomorphosis involves both embryonic and post-embryonic events, since the relative sizes of parts in neonates and the relative growth rates of parts in later instars change seasonally. Antennules grow during winter, but may even regress during summer. Mucrones show an opposite pattern, growing maximally during late summer and fall. The kinds of cyclomorphotic changes in Bosmina suggest evolutionary adjustments to two principle types of predators: visual vertebrates and blindly grasping invertebrates. While laboratory experiments implicate temperature and turbulence as proximate factors in the cyclomorphotic changes, some unknown factor (or factors) also appears necessary to stimulate the magnitude of responses observed in nature.     

Clutch size variation and morphology in a cyclomorphic Bosmina population

Clutch size, cyclomorphosis and allometric growth were analysedin a population of the humpbacked Bosmina (E.) coregoni gibbera.This species shows cyclomorphosis in antennule length and bodyheight, traits that may reduce predation risk from Leptodorakindtii. Individuals with long antennule and extreme body heightmay pay a cost in terms of decreased reproductive capacity.On the other hand, increasing the body height may be a way toincrease the brood chamber volume during periods of good foodconditions. We tested these hypotheses by comparing the seasonalvariation in clutch size with the seasonal variation in morphology.Antennule length and body height increased from mid-May to Augustand showed usually positive allometry at times with high populationdensities of the predatory cladoceran Leptodora kindtii. Clutchsize decreased from spring to late summer contrary to the hypothesisthat cyclomorphosis in height is caused by a seasonal variationin reproductive demand. However, within-dates antennule lengthwas negatively related and body height was positively relatedto clutch size. We conclude that the long antennule may imposea cost that reduces the reproductive capacity. The hypothesisthat carapace cyclomorphosis is driven by seasonally varyingclutch sizes was rejected.     

Macrolide resistance genotypes and phenotypes among erythromycin-resistant clinical isolates of Staphylococcus aureus and coagulase-negative staphylococci, Italy

One hundred macrolide-resistant staphylococcal isolates from clinically relevant infections in Italy during a 19-month period were studied. Four distinct resistance phenotypes were observed using the triple-disk induction test (erythromycin, clindamycin, telithromycin): the cMLS_B phenotype (24 isolates); the iMLS_B phenotype (41 isolates); the MS phenotype (three isolates); and the iMTS phenotype (erythromycin-induced telithromycin resistance) (32 isolates). ermC and ermA genes predominated within erythromycin-resistant Staphylococcus aureus isolates with iMLS_B phenotype and cMLS_B phenotype, respectively. Among erythromycin-resistant CoNS isolates, half of the strains showed the iMTS or MS/ msrA association, and ermC gene predominated among isolates with MLS_B phenotype. By pulsed-field gel electrophoresis, high genetic heterogeneity was observed among the isolates studied. Both independent acquisition of macrolide resistance genes and spread of specific resistant clones were observed. Association between certain clonal types and specific types of infection could be detected. To our knowledge, this is the first report on characterization of erythromycin-resistant staphylococci in Italy.     

Morphological variation in Bosmina longirostris (O.F. Müller, 1785) (Crustacea: Cladocera): consequence of cyclomorphosis or indication of cryptic species?

Samples of the polymorphic cladoceran Bosmina longirostris were collected in several lakes and ponds in Western Germany between 1993 and 1999. The shape of the first antennule was used as a qualitative criterion to classify 1241 individuals to three morphs (`longirostris', `cornuta', `pellucida') according to Lieder (Crustacea: Cladocera: Bosminidae. Stuttgart, Germany: Gustav. Fischer Verlag, 1996). Eight morphometric variables were subsequently measured in each individual to quantify size‐ and shape‐related features. Principal component and discriminant analyses were used to describe the morphological variation within and among the three morphs. Seasonal environmental changes modified several traits and thus, cyclomorphosis accounted for a high proportion of within‐morph variation. However, there was no gradual change from one morph to another. As well among‐morph variation was considerably greater than within‐morph variation. Consequently, the disagreement between the qualitative pre‐classification and the assignment basing on morphometric discriminant functions was low (4.6–12.0%). Considering that each morph is morphologically well‐defined, and that the different morphs coexisted over several generations in the same lake we conclude that they represent different species rather than variants of one polymorphic species. Therefore, we recognize beside the nominal taxon Bosmina longirostris ( 26 ) two more species: Bosmina cornuta ( 10 ) and Bosmina pellucida 30 .     

Morphological variation and population dynamics of Bosmina (E.) longicornis kessleri Uljanin (Crustacea: Anomopoda: Bosminidae) in the Bukovec Reservoir (S.E. Slovakia)

Bosmina (Eubosmina) longicornis kessleri and B. (Bosmina) longirostris are minor components among the crustacean zooplankton in the pelagial of Bukovec Reservoir. B. (E.) l. kessleri is a recent colonist in the Carpathian region and was first found in the Bukovec reservoir in 1986. The present study gives some information about the niche occupied by B. (E.) l. kessleri in the zooplankton community; the seasonal abundance of zooplankton and phenotypic variability (cyclomorphosis) of B. (E.) l. kessleri are also examined.     

The late-glacial/holocene Bosmina (Eubosmina) fauna of Lake Constance (Untersee) (F.R.G.): traces of introgressive hybridization

Subfossil Bosmina (Eubosmina) remains were analysed in a sediment core from the Untersee of Lake Constance which covered the Late-Glacial/Holocene period.During the Late-Glacial and the early Holocene the lake was inhabited only by Bosmina longispina Leydig. In the Late Holocene a second species, Bosmina coregoni f. kessleri Uljanin, appeared. In the uppermost sediment layers the morphological gap between the two taxa disappeared, apparently from introgressive hybridization.     

Abrupt Changes in Bosmina (Cladocera,Crustacea) Assemblages During the History of the Ostrowite Lake (Northern Poland)

During the 10000-year history of the Ostrowite Lake, there have been several episodes of change in dominance amongst species of the genus Bosmina. The dominants were alternately B.longirostris and Eubosmina spp. Amongst the subgenus Eubosmina, two species prevailed in different periods:Bosmina coregoni and Bosmina reflexa. The first species, Bosmina coregoni, is characterized by long antennae and short carapace mucrones, while the second one, Bosmina reflexa, by short antennae and very long mucrones. Bosmina reflexa was dominant at the beginning of the lake's history (Preboreal, 10000--9000 BP) and during the early Subboreal Period (5000–3500 BP). Only a small number of remains of Bosmina longispina(Eubosmina spp.) were present along the entire profile. Such strong changes in the domination of Bosmina species were observed for the first time in the sediments of Polish lakes. A similar transition from one species to another has been described in a few German lakes and was linked to climate changes. However, the changes in the Ostrowite Lake do not correlate with climate changes, but most probably, with changes in the lake's trophic level. This is suggested by the simultaneous increase of Bosmina reflexa and a good indicator of eutrophy, Bosmina longirostris.     

Food and food selection of cisco (Coregonus albula L.) in a dysoligotrophic lake

With minor exceptions, cisco (C. albula) in Lake Suomunjärvi fed on cladocerans and copepods. The food habits were different among two size classes of fish. The composition of cisco diet changed at different depths and times of the day, but the distribution of zooplankton was usually very similar in each period irrespective of the depth or diel period. Daphnia, Bosmina, Cyclops scutifer and Heterocope appendiculata were the main diet of cisco. Calculations of fish electivity indices showed that cisco selected usually large species of cladocerans and copepods and a small cladoceran, Bosmina coregoni. Body-size selection was clear for Daphnia and Bosmina.     

Adherence to host extracellular matrix and serum components by Enterococcus faecium isolates of diverse origin

Enterococcus faecium has emerged as an important cause of nosocomial infections over the last two decades. We recently demonstrated collagen type I (CI) as a common adherence target for some E. faecium isolates and a significant correlation was found to exist between acm -mediated CI adherence and clinical origin. Here, we evaluated 60 diverse E. faecium isolates for their adherence to up to 15 immobilized host extracellular matrix and serum components. Adherence phenotypes were most commonly observed to fibronectin (Fn) (20% of the 60 isolates), fibrinogen (17%) and laminin (Ln) (13%), while only one or two of the isolates adhered to collagen type V (CV), transferrin or lactoferrin and none to the other host components tested. Adherence to Fn and Ln was almost exclusively restricted to clinical isolates, especially the endocarditis-enriched nosocomial genogroup clonal complex 17 (CC17). Thus, the ability to adhere to Fn and Ln, in addition to CI, may have contributed to the emergence and adaptation of E. faecium , in particular CC17, as a nosocomial pathogen.     

Subpopulations of Staphylococcus aureus Clonal Complex 121 Are Associated with Distinct Clinical Entities

We investigated the population structure of Staphylococcus aureus clonal complex CC121 by mutation discovery at 115 genetic housekeeping loci from each of 154 isolates, sampled on five continents between 1953 and 2009. In addition, we pyro-sequenced the genomes from ten representative isolates. The genome-wide SNPs that were ascertained revealed the evolutionary history of CC121, indicating at least six major clades (A to F) within the clonal complex and dating its most recent common ancestor to the pre-antibiotic era. The toxin gene complement of CC121 isolates was correlated with their SNP-based phylogeny. Moreover, we found a highly significant association of clinical phenotypes with phylogenetic affiliations, which is unusual for S. aureus. All isolates evidently sampled from superficial infections (including staphylococcal scalded skin syndrome, bullous impetigo, exfoliative dermatitis, conjunctivitis) clustered in clade F, which included the European epidemic fusidic-acid resistant impetigo clone (EEFIC). In comparison, isolates from deep-seated infections (abscess, furuncle, pyomyositis, necrotizing pneumonia) were disseminated in several clades, but not in clade F. Our results demonstrate that phylogenetic lineages with distinct clinical properties exist within an S. aureus clonal complex, and that SNPs serve as powerful discriminatory markers, able to identify these lineages. All CC121 genomes harboured a 41-kilobase prophage that was dissimilar to S. aureus phages sequenced previously. Community-associated MRSA and MSSA from Cambodia were extremely closely related, suggesting this MRSA arose in the region.     

Cyclomorphosis of Bosmina (Eubosmina) tubicen in the Okefenokee Swamp

Cyclomorphosis of Bosmina (Eubosmina) tubicen, expressed asallometric growth of antennules and mucrones, was followed infive populations in the Okefenokee Swamp. Allometry of antennuleswas strongly cyclical, being positive in fall, winter and spring,but negative in early summer. Antennule allometry and othermorphological variables (egg size, body size, antennule andmucro length) were all negatively correlated with temperature,but mucro allometry had a radically different pattern than theantennule - body size cyclomorphosis. Populations could be separatedbetween lakes according to allometry of the mucrones, and mucroallometry was also negatively correlated with zooplankton populationdensity. Morphological data from this study do not support serialreplacement of morphotypes within lakes, and correlation withecological parameters does not support the hypothesis that cyclomorphosisis caused by the presence of invertebrate predators.     

Clonal Strain Persistence of Candida albicans Isolates from Chronic Mucocutaneous Candidiasis Patients

Chronic mucocutaneous candidiasis (CMC) is a primary immunodeficiency disorder characterised by susceptibility to chronic Candida and fungal dermatophyte infections of the skin, nails and mucous membranes. Molecular epidemiology studies of CMC infection are limited in number and scope and it is not clear whether single or multiple strains inducing CMC persist stably or are exchanged and replaced. We subjected 42 C. albicans individual single colony isolates from 6 unrelated CMC patients to multilocus sequence typing (MLST). Multiple colonies were typed from swabs taken from multiple body sites across multiple time points over a 17-month period. Among isolates from each individual patient, our data show clonal and persistent diploid sequence types (DSTs) that were stable over time, identical between multiple infection sites and exhibit azole resistant phenotypes. No shared origin or common source of infection was identified among isolates from these patients. Additionally, we performed C. albicans MLST SNP genotype frequency analysis to identify signatures of past loss of heterozygosity (LOH) events among persistent and azole resistant isolates retrieved from patients with autoimmune disorders including CMC.     

Population Structure of Puccinia recondita in Western Europe During 1995, as Assessed by Variability in Pathogenicity and Molecular Markers

The population structure of Puccinia recondita f. sp. tritici (Prt) in western Europe was examined by assessing variability in pathogenicity and in randomly amplified polymorphic DNA (RAPD) among 61 single uredinial isolates. The isolates were chosen to represent pathotypes detected in a previous survey of pathogenic variability in the fungus in western Europe in 1995. Thirty‐five pathotypes were identified by assessing infection types produced by the 61 isolates on 24 differential lines, each with a single gene for resistance to Prt. In contrast, only 18 RAPD phenotypes were identified by scoring 19 polymorphic RAPD bands generated with eight RAPD primers. When analysed by cluster and bootstrap analyses, the pathogenicity and RAPD results revealed little evidence for robust distinct clusters among the isolates. Multiple isolates of several pathotypes collected from widely separated locations such as Belgium, Germany, France, Italy and Switzerland had the same RAPD phenotype, providing evidence of clonal migration over considerable distances in western Europe. Some variability (one or two band differences) was observed in RAPD phenotype within several pathotypes, indicating the possible occurrence of genetic changes independent of pathogenicity, and/or the independent development of pathotypes with different genetic backgrounds. Two groups of isolates identified in the 1995 survey, differentiated by pathogenicity for genes Lr3a, Lr3bg, Lr3ka and Lr30, were not distinguished by RAPD phenotype, indicating that the groups probably do not constitute separate lineages within the pathogen population. Little correlation was apparent between the polymorphisms observed in pathogenicity and RAPD phenotypes. The similarity in the genetic backgrounds of the isolates, as assessed by RAPD markers, suggest that the observed differences in pathogenicity may have arisen by selection for specific virulences corresponding to genes for resistance in wheat cultivars grown in the region. Three isolates of pathotype 3, restricted in its distribution to southern France during 1995, were distinct from all other isolates in RAPD phenotype. Circumstantial evidence suggests that this pathotype originated from northern Africa, and that it belongs to a group of leaf rust pathogens specialized to durum wheats.     

Genetic trends in a population evolving antibiotic resistance

The evolution of antibiotic resistance provides a well-documented, rapid, and recent example of a selection driven process that has occurred in many bacterial species. An exhaustive collection of Moraxella catarrhalis that spans a transition to chromosomally encoded penicillin resistance was used to analyze genetic changes accompanying the transition. The population was characterized by high haplotypic diversity with 148 distinct haplotypes among 372 isolates tested at three genomic regions. The power of a temporally stratified sample from a single population was highlighted by the finding of high genetic diversity throughout the transition to resistance, population numbers that remained high over time, and no evidence of departures from neutrality in the allele frequency spectra throughout the transition. The direct temporal analysis documented the persistence, antibiotic status, and haplotypic identity of strains undergoing apparent clonal expansions. Several haplotypes that were beta-lactamase nonproducers in early samples converted to producers in later years. Maintenance of genetic diversity and haplotype conversions from sensitive to resistant supported the hypothesis that penicillin resistance determinants spread to a diverse array of strains via horizontal exchange. Genetic differentiation between sample years, estimated by F(ST), was increasing at a rate that could cause complete haplotype turnover in less than 150 years. Widespread linkage disequilibrium among sites within one locus (copB) suggested recent mutation followed by clonal expansion. Nonrandom associations between haplotypes and resistance phenotypes provided further evidence of clonal expansion for some haplotypes. Nevertheless, the population structure was far from clonal as evidenced by a relatively low frequency of disequilibria both within sites at a second locus (M46) as well as between loci. The haplotype-antibiotic resistance association that was accompanied by gradual haplotype turnover is consistent with a hypothesis of genetic drift at marker loci with directional selection at the resistance locus.     

Some studies on the ecology of limnetic crustacean zooplankton in Lake Begnas and Rupa,Pokhara Valley,Nepal

Monthly zooplankton samples taken during the period February, 1977 to February, 1978 in the deepest portion in two shallow sub-tropical Lakes, Begnas and Rupa in the Pokhara Valley, Nepal were studied. Four peaks of zooplankton abundance were noted. Adult and copepodid Copepoda were numerically dominant in both lakes with 56% Copepoda, 24% Cladocera and 20% nauplii in Lake Begnas and 48% Copepoda, 36% Cladocera and 16% nauplii in Lake Rupa. Other forms like Chaoborus larvae occurred sporadically in both lakes. An occurrence of the rare Limnocnida nepalensis (Coelenterata: Limnomedusae) in Lake Rupa was also noted during April and May, 1977. Although both of these lakes had already been ranked as eutrophic, the absence of calanoids, relative abundance of Bosmina longirostris and higher gross primary production in Lake Rupa is an indication of a higher trophic condition than that of Lake Begnas.     

Fish predation and reduction in body size in a Cladoceran population: palaeoecological evidence

SUMMARY. 1 We studied the recent history (1852-1982) of Lake Pyhä-järvi, south-west Finland, using both cladoceran microfossils and independent historical data. The objective of the study was to assess the impact of introduced planktivorous whitefish Coregonus lavaretus s.1. on zooplankton, especially on the main prey species Bosmina coregoni Baird s.str.
2. A size-frequency analysis of carapace remains preserved in the sediments clearly shows a size shift in a Bosmina coregoni population. The carapace length of B. coregoni decreased by 11.0% after the introduction of the size-selective planktivorous whitefish, indicating a parallel body-size reduction.
3.During the study period no changes could be found in the carapace length of Chydorus sphaericus O. F. Müller, which was not preyed upon.     

Phenotypic patterns of HIV-1 clonal populations during highly active antiretroviral therapy (HAART).

Several studies have demonstrated that during HIV-1 infection many different viral clones may co-exist in the same individual. These clones may differ regarding their biological phenotype and may influence both the natural history of infection and the clinical response to antiretroviral therapy. The aim of the present study was to investigate the influences of combination therapies including protease inhibitors (HAART) on the phenotypical pattern of HIV-1 biological clones in peripheral blood mononuclear cells. Viral isolation and biological characterisation of bulk isolates and clonal viral isolates were performed on two AIDS patients, before and after three months of antiretroviral therapy. A decrease of viral load in plasma specimens in association with a change of clonal composition during antiretroviral therapy was observed in both patients during treatment. Before therapy both of the patients had a syncytium inducing (SI) bulk isolate and the majority of the biological clones were characterised as SI. After treatment, the bulk isolates were still SI in both cases, but the majority of biological clones were characterised as non-syncytium inducing (NSI). These results suggest that HIV clonal composition and relative phenotypic pattern undergo different changes not only during the natural course of HIV infection but also while patients are on antiretroviral combination therapy.     

Clonal diversity in the Japanese silver crucian carp,Carassius langsdorfii inferred from genetic markers

The Japanese silver crucian carp, Carassius langsdorfii, is a naturally polyploid fish that reproduces by gynogenesis, resulting in a geographically clustered clonal population. To determine the amount of clonal diversity in this species, we used genetic markers to compare fish from several Japanese locations. Samples were collected from Lake Kasumigaura (Ibaraki Pref.), Lake Imba (Chiba Pref.), Lake Fukushimagata (Niigata Pref.), Lake Biwa (Shiga Pref.), Lake Koyama (Tottori Pref.), and the Niyodo and Monobe Rivers (Kochi Pref.). The genetic markers used were the microsatellite loci GF1(*), GF17(*), and GF29(*), as well as isozyme (creatinekinase CK(*)) and mtDNA (D-loop region) RFLP. In the seven locations sampled, 61 clonal lines were identified by combining the genotypes of the three microsatellite loci. Populations at all locations consisted of six to 28 clonal lines. Fourteen common clonal lines were detected in two or more locations, and 13 of these were observed in Lake Biwa. We suggest that these clonal lines have been widely distributed in Japanese freshwaters through the intentional stocking of fish species such as "gengorobuna" (C. cuvieri) and "ayu" (Plecoglossus altivelis altivelis) obtained from Lake Biwa and its adjacent waters. The CK(*) genotypes and mtDNA haplotypes of fish from Lake Kasumigaura differed from those of other locations.     

Anatomical distribution and genetic relatedness of antimicrobial-resistant Escherichia coli from healthy companion animals

Aims: Escherichia coli have been targeted for studying antimicrobial resistance in companion animals because of opportunistic infections and as a surrogate for resistance patterns in zoonotic organisms. The aim of our study is to examine antimicrobial resistance in E. coli isolated from various anatomical sites on healthy dogs and cats and identify genetic relatedness. Methods and Results: From May to August, 2007, healthy companion animals (155 dogs and 121 cats) from three veterinary clinics in the Athens, GA, USA, were sampled. Escherichia coli was isolated from swabs of nasal, oral, rectal, abdomen and hindquarter areas. Antimicrobial susceptibility testing against 16 antimicrobials was performed using broth microdilution with the Sensititre? system. Clonal types were determined by a standardized pulsed‐field gel electrophoresis protocol. Although rectal swabs yielded the most E. coli (165/317; 52%) from dogs and cats, the organism was distributed evenly among the other body sites sampled. Escherichia coli isolates from both dogs and cats exhibited resistance to all antimicrobials tested with the exception of amikacin, cephalothin and kanamycin. Resistance to ampicillin was the most prevalent resistance phenotype detected (dogs, 33/199; 17%; and cats, 27/118; 23%). Among the resistant isolates, 21 resistance patterns were observed, where 18 patterns represented multidrug resistance (MDR; resistance ≥2 antimicrobial classes). Also among the resistant isolates, 33 unique clonal types were detected, where each clonal type contained isolates from various sampling sites. Similar resistance phenotypes were exhibited among clonal types, and three clonal types were from both dogs and cats. Conclusions: Healthy companion animals can harbour antimicrobial‐resistant E. coli on body sites that routinely come in contact with human handlers. Significance and Impact of the Study: This study is the first report that demonstrates a diverse antimicrobial‐resistant E. coli population distributed over various sites of a companion animal’s body, thereby suggesting potential transfer of resistant microflora to human hosts during contact.