A hotspot of spontaneous and UV-induced illegitimate recombination during formation ofλbio transducing phage

To study the mechanism of spontaneous and UV-induced illegitimate recombination, we examined the formation of thebio specialized transducing phage inEscherichia coli. Because mostbio transducing phages have double defects in thered andgam genes and have the capacity to form a plaque on anE. coli P2 lysogen (Spi^– phenotype), we selectedbio transducing phage by their Spi^– phenotype, rather than using thebio marker. We determined sequences of recombination junctions ofbio transducing phages isolated with or without UV irradiation and deduced sequences of parental recombination sites. The recombination sites were widely distributed onE. coli bio and DNAs, except for a hotspot which accounts for 57% of UV-inducedbio transducing phages and 77% of spontaneously inducedbio transducing phages. The hotspot sites onE. coli and DNAs shared a short homology of 9 bp. In addition, we detected direct repeat sequences of 8 by within and near both thebio and hotspots. ArecA mutation did not affect the frequency of the recombination at the hotspot, indicating that this recombination is not a variant ofrecA-dependent homologous recombination. We discuss a model in which the short homology as well as the direct repeats play essential roles in illegitimate recombination at the hotspot.     

Spectral discriminative ability of larvae of Trogoderma granarium Everts

The photic reaction of larvae of Trogoderma granarium at different spectral ranges indicates a maximum in orange light (=600 mµ+) and in blue light ( max.=440 mµ). The lowest percentage of larvae was caught at violet ( max.=370 mµ) and green ( max.=525 mµ).Bilateral illumination with adjacent spectral ranges showed that discrimination between short wavelengths is stronger than between long ones.When given the choice between light and dark, the insects invariably showed a photonegative reaction, which was strongest in blue light ( max.=440 mµ) and less pronounced in orange and red light.Experiments carried out on responses to orange and blue in different intensity ratios showed that at equal light intensities the photic reaction to orange light exceeds by more than a ratio of 8 : 1 the reaction to blue light. The positive reaction to orange is inversed at orange light intensities above 200 times as high as the intensity of blue light, and the larvae are attracted to blue.Thus, each wavelength range has a specific brightness for the larvae which also depends on its light intensity.

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Das unterscheidungsvermögen von spektralfarben durch Trogoderma Granarium-larven

Zusammenfassung Die Reaktionen von Trogoderma granarium-Larven auf Licht verschiedener Spektralbereiche zeigen die Fähigkeit, zwischen Wellenlängen des Orange-Rot-Bereichs (=600–680 mµ) und des Violett-Gelb-Bereichs (=370–570 mµ) zu unterscheiden (p=0,05). Die Anzahl der von Orange (=600 mµ) und Blau ( max.=440 mµ) angelockten Larven war signifikant höher als die von benachbarten Spektralbereichen angezogenen. Die geringsten Larvenprozentsätze wurden im Violett (max.=370 mµ) und Grün (max. 525 mµ) gefunden.Bilaterale Beleuchtung mit Wellenlängen benachbarter Spektralbereiche ergab, daß das Unterscheidungsvermögen zwischen kurzen Wellenlängen schärfer ist als zwischen langen.Wenn sie zwischen Licht und Dunkelheit wählen konnten, zeigten die Larven unverändert eine photonegative Reaktion, die in blauem Licht ( max.=440 mµ) am strengsten, in orange und rotem Licht weniger betont war.Die Larven sind also für kurze Wellenlängen empfindlicher.Es wurden Versuche über die Reaktion auf Orange (=600 mµ) und Blau ( max.=440 mµ) verschiedener Intensität durchgeführt. Die Ergebnisse zeigen, daß bei gleicher Lichtintensität die photische Reaktion auf orangefarbiges Licht die Reaktion auf blaues um mehr als das 8fache übertrifft. Die positive Reaktion auf Orange schlägt bei Orange-Licht-Intensitäten, die etwa 200 mal über der des Blau-Lichts liegen, um und die Larven werden von Blau angezogen.So hat jeder Wellenlängenbereich für die Larven eine spezifische Helligkeit, die auch von seiner Intensität abhängt.

     

Spectral sensitivity of visual cells of the compound eye ofBlatta orientalis

Responses of single visual cells of the anterior part of the compound eye of the oriental cockroachBlatta orientalis were recorded intracellularly. Two spectral types of cells were discovered: ultraviolet receptors with _max 361 nm and green-sensitive receptors with _max 503 nm. The spectral curve of the whole eye, measured by the electroretinogram, included two peaks (=350–370 and 500 nm) and a minimum between 400 and 430 nm. This last fact is interpreted as additional evidence of the dichromatic vision of the cockroach.M. V. Lomonosov Moscow State University. Translated from Neirofiziologiya, Vol. 17, No. 1, pp. 57–61, January–February, 1985.     

Changes in neutral amino acid efflux and membrane potential associated with the expression of CFTR protein

Summary The expression of wild type CFTR facilitates the efflux of neutral amino acids (Rotoli et al., Biochem. Biophys. Res. Commun. 204: 653–658, 1994); as a result, after an extensive depletion of intracellular amino acid pool obtained through an incubation in saline solution, the intracellular leucine levels were lower in murine C127 cells transfected with the wild type CF gene (C127 CFTRw/t) than in cells transfected with either mutant CF (C127 CFTRF508 cells) or mock vector only. No change in amino acid efflux was detected when C127 CFTRw/t and C127 CFTRw/t and C127 CFTRF508 cells were studied under conditions known to activate protein kinase A. Upon an incubation in Cl^– free medium, a permeant analogue of cAMP caused a marked cell depolarization of C127 CFTRw/t cells but not of C127 CFTRF508 cells, thus showing a functional expression of CFTR protein in the former cell line. However, we found that, upon a Cl^– free incubation and in the absence of exogenous cAMP, C127 CFTRw/t cells developed a marked hyperpolarization that was not detected in C127 CFTRF508 cells. It is concluded that the expression of normal CFTR accelerates amino acid efflux and enhances cell hyperpolarization in Cl^– free media; both these effects appear to be independent from PKA stimulation of CFTR.Abbreviations 8-Br-cAMP 8-bromoadenosine 3,5-cyclic monophosphate - C127 CFTRw/t C127i cells expressing CFTR wild type - C127 CFTRF508 C127i cells expressing CFTR bearing F508 mutation - C127 mock C127i cells transfected with the mock vector - CF cystic fibrosis - CFTR cystic fibrosis transmembrane conductance regulator - DMEM Dulbecco's modified Eagle medium - EBSS Earle's balanced salt solution - FBS fetal bovine serum - PKA protein kinase A     

Dependence of transfection efficiency of calcium treated Escherichia coli cells on bacterial genotype and form of lambda DNA

Summary The transfecting activity of linear DNA is 100 times higher in calcium treated E. coli K 12 (ⁱ⁴³⁴) than in non-lysogenic strains: the levels of transfection are 1–2.10⁷ and 1–2.10⁵ infective centers per 1 g of DNA, respectively. The high efficiency of lysogenic cells transfection is not due to the spontaneously liberated helper phage. Evidently, it is called forth by transfecting DNA-prophage recombination or/and by inhibition of nuclease activity in lysogenic cells. Both ring forms DNA (supercoiled and open circles) show very low infectivity, if any, in calcinated cells.     

The pea lectin gene family contains only one functional gene

Molecular hybridization experiments have shown that the pea genome contains four regions which hybridize with pea lectin cDNA (Kaminski, Buffard, and Strosberg, 1986. Plant Science 46, 111–116). The complete organization of the pea lectin gene family was investigated. Four partial EcoRI genomic libraries were screened with a lectin cDNA (pPS 15–50) covering the entire coding region. Four positive recombinant phages, I 101, I 52, III 51 and IV 22, were isolated and the DNA sequences of the subclones, designated respectively PSL1, PSL2, PSL3 and PSL4, were determined. PSL2, PSL3 and PSL4 are incomplete genes; the presence of several stop codons in the correct reading frames indicate that these genes cannot code for a functional lectin protein. The sequences of PSL1 and pPS 15–50 have identical coding regions. The pea lectin gene has no intervening sequences and is flanked at its 5 region by a sequence containing an exceptionally high A+T content (73%). Eucaryotic consensus sequences such as a TATA box and a polyadenylation signal are also found in the flanking regions of the PSL1 clone.     

Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench

The thermophilic strains HTA426 and HTA462 isolated from the Mariana Trench were identified as Geobacillus kaustophilus and G. stearothermophilus, respectively, based on physiologic and phylogenetic analyses using 16S rDNA sequences and DNA–DNA relatedness. The genome size of HTA426 and HTA462 was estimated at 3.23–3.49 Mb and 3.7–4.49 Mb, respectively. The nucleotide sequences of three independent -phage inserts of G. stearothermophilus HTA462 have been determined. The organization of protein coding sequences (CDSs) in the two -phage inserts was found to differ from that in the contigs corresponding to each insert assembled by the shotgun clones of the G. kaustophilus HTA426 genome, although the CDS organization in another insert is identical to that in the HTA426 genome.     

Electrophysiological measurements of spectral mechanisms in the retinas of two cervids: white-tailed deer (Odocoileus virginianus) and fallow deer (Dama dama)

Electroretinogram (ERG) flicker photometry was used to study the spectral mechanisms in the retinas of white-tailed deer (Odocoileus virginianus) and fallow deer (Dama dama). In addition to having a rod pigment with maximum sensitivity (_max) of about 497 nm, both species appear to have two classes of photopic receptors. They share in common a short-wavelength-sensitive cone mechanism having _max in the region of 450–460 nm. Each also has a cone having peak sensitivity in the middle wavelengths, but these differ slightly for the two species. In white-tailed deer the _max of this cone is about 537 nm; for the fallow deer the average _max value for this mechanism was 542 nm. Deer resemble other ungulates and many other types of mammal in having two classes of cone pigment and, thus, the requisite retinal basis for dichromatic color vision.Abbreviations ERG electroretinogram - LWS long wavelength sensitive - MWS middle wavelength sensitive - SWS short wavelength sensitive     

Rearrangements between the operators in the bacteriophage lambda

Summary The left operator mutant v2s develops poorly during infection as a result of constitutive expression of the left operon. A revertant of v2s, designated iri, was found to contain an inversion of the cI region with the inversion endpoints to be within the lambda operators o _L and o _R. Formation of the inversion is facilitated by a translocation of right operator o _R ^c mutant sequence to the left operator in v2s. The inversion in iri positions wild-type o _R sequence at o _L returning control of the left operon to repression by the lambda cro repressor.     

Identification of a positive regulatory protein in Escherichia coli: the product of the cysB gene

Summary From the specialized transducing bacteriophage cysB, recombinant phages cysB242 and cysB257 have been obtained, each of which carries an amber mutation in the cysB cistron. A comparison of polyacrylamide gel electrophoretic profiles of labelled extracts from uv-irradiated bacteria that had been infected with cysB ⁺ or with cysB-amber phages, led to the identification of a 39,000-dalton polypeptide as the product of the cysB gene. The native protein was purified to near radiochemical purity and was found to be an oligomer with an isoelectric point close to pH 7.     

Recurrent t(11;22) breakpoint mapping by chromosome flow sorting and spot-blot hybridization

Summary The breakpoint of the recurrent t(11;22) translocation, one of the most frequent chromosome anomalies encountered in human population, always involves bands 11q23.2 and 22q11.2. The involvement of the C locus of the immunoglobulin gene cluster on chromosome 22 has been suggested: however, in situ hybridization experiments have yielded conflicting results. In order to solve these discrepancies by another approach, we have used bivariate flow sorting to separate the chromosomes of interest and to map the specific breakpoints by direct spot-blot hybridization with the gene-specific radiolabelled DNA probes, Alu, V, ets. The results showed unambiguously that in the t(11;22) patient analysed, a set of C and V genes was translocated to the der(11) chromosome. Since V genes are situated proximally to C genes, we demonstrate that, in the case studied here, the chromosome 22 breakpoint is not located within or even immediately close to the C region.Presented at the 7th International Congress of Human Genetics, Berlin, September 22–26, 1986     

AP1-Related factors interact with simian immunodeficiency virus long terminal repeats

The SF1 element (nucleotide –135 to –131) in the U3 region of the simian immunodeficiency virus (SIV) 5 to the NF-B binding site plays a role in basal expression of SIV [Winandy et al., J Virol 66:5216–5223, 1992]. Using the electrophoretic mobility shift assay, we have characterized a specific SF1 binding factor (sf1) in the nuclear fractions of transformed T cells as well as monocytic and macrophage leukemic cells. A strong SF1 binding activity was demonstrated in all cell types. The SF1 binding activity was unaffected by treatment with PMA, PHA, or Ca²⁺ ionophore. The HIV-1 long terminal repeat (LTR) 5 to the NF-B site contained a homologous element which showed a specific binding complex of different mobility. The sf1 interacting with SIV LTR was composed of multiple proteins judged from UV crosslinking, some of which might be related to Jun/Fos proteins.     

Induction threshold of the Q - mutant of bacteriophage λ in Escherichia coli

Temperature induction of bacteriophage in Escherichia coli depends on bacterial population density. The lowest rate of viability loss at the temperature threshold results in maximal gene expression of . -Infection causes bacterial cells to lose cell viability and thus decrease temperature induction efficiency. In addition, shifting-up in temperature increases the probability of progeny ; thus, the mortality of bacterial hosts increases and the expression of recombinant proteins by naked significantly decrease.     

Characterization of dnaA gene carried by lambda transducing phage

Summary Specialized transducing phages dnaA were obtained by inducing lysogens in which tna was integrated at the tnaA region of the Escherichia coli chromosome; the tnA region is located in the vicinity of the dnaA gene. The dnaA ^- deletion derivatives of dnaA were isolated from the lysate of dnaA grown on bacteria carrying a transposon Tn3.The structures of various transducing phages thus obtained were determined by heteroduplex DNA mapping. From these results, the transducing fragment of 13.8-kb-long was divided into nine domains. Upon infection of UV-irradiated cells with the phage, production of polypeptides of 49 kD and 42 kD was specifically associated with infections by the dnaA and recF transducing phages. Polypeptides of 49 kD and 42 kD appeared to be coded for by dnaA and recF genes, respectively. The dnaA gene was assigned to the region of 2.8-kb-long which extends by 2.4 kb in the counterclockwise direction on the E. coli genetic map and 0.4 kb in the opposite direction, as measured from the nearest HindIII site close to the tnaA gene. The recF gene was also discovered to lie very close to dnaA in the order of tnaA-dnaA-recF.Merogenotes heterozygous for the dnaA gene were constructed by introducing F100-12 carrying dnaA into the recipients with different mutations at or near dnaA. For combinations, F(dnaA ⁺)/dnaA46 and F(dna ⁺)/dna-83, dnaA ⁺ was trans-dominant, whereas the dnaA ⁺ was recessive for F(dnaA ⁺)/dna-5. For F(dnaA ⁺)/dna-167, the result of the transdominance test was affected by the growth media employed; dnaA ⁺ was dominant on a -broth plate, and dna-167 was dominant on an M9-minimal plate. Thus, transdominance of dnaA ⁺ in heterozygotes is affected by difference in mutations and growth media.     

Lambda encodes an outer membrane protein: the lom gene.

Summary infected minicells synthesize a polypeptide (M _r=20,500) which is incorporated almost exclusively into the outer membrane of the minicell envelope. The gene (lom=lambda outer membrane) encoding this polypeptide has been mapped in the nonessential region of the genome between coordinates 39.4% and 40.7% of .     

Growth rate suppression of cultured mammalian cells enhances protein productivity

Suppression of proliferation of cells which contain stable or stabilized mRNA coded for a protein to be produced, a partial mimic of cell differentiation, was examined for enhancing protein production by cultured mammalian cells. Hybridoma 2E3 cells which were adapted to be interleukin-6 sensitively growth-suppressed accumulated the mRNA of IgG₁ which is reported stable, and IgG₁ production rate increased as a result when their growth was suppressed with interleukin-6. A myeloma cell line was similarly adapted; the obtained myeloma cells can be used as host cells for enhancing production of exogenous proteins by suppressing growth with interleukin-6. Temperature-sensitively growth-suppressible mutants of mouse mammary carcinoma FM3A were transfected with cDNA of IgM ₁ chain and cultured at nonpermissive temperature to enhance production of ₁. Addition of various growth-suppressive reagents to culture medium was studied for finding methods suitable for suppressing growth while maintaining high cell viability. Caffeine yielded the best results among these reagents. Deprivation of various growth-supporting components in culture medium was also tested; simultaneous deprivation of insulin and transferrin viably suppressed growth of hybridoma 2E3 cells, resulting in enhanced antibody productivity.Abbreviations IL6 recombinant human interleukin-6 - TGF- recombinant human TGF-₁ - X63.653-P3X63 Ag8.653 myeloma     

Normal expression of the viral gene N interferes with growth of bacteriophage lambda in Escherichia coli 15T-.

Summary Growth of and of some lambdoid phages is considerably inhibited on strain 3057 derived from E. coli 15T^-. Mutants of which overcome this inhibition map in gene N. Some of these hty mutants are temperature sensitive for growth on E. coli K12. Thus plating of on strain 3057 allows one to isolate temperature sensitive N mutants. The hty mutants produce less than normal N activity as judged by their low efficiency of plating on a nus ^- host and by the extended latent period of some of them on normal hosts. The inability of strain 3057 to propagate can be at least partially reversed by addition of thymidine to the medium and the growth difference between hty and in 3057 increases with decreasing thymidine concentration. The amount of DNA produced by in 3057 at low thymidine concentration is lower than that produced by hty under the same conditions. Only a small percentage of the DNA produced by in 3057 is packaged into viable phage particles. This suggests that not only produces less DNA in 3057 than hty but that an important part of the DNA in 3057 is in a form which can not be packaged or which is noninfective for other reasons. A hypothesis is discussed that hty mutations enable to grow on E. coli 15T^- at low thymidine concentration because they lead to reduction in the number of single strand nicks in the DNA by reducing the intracellular endonuclease activity. Under permissive conditions conditional lethal N mutants are favored for growth on 3057 over N ⁺ which confirms the idea that N activity or the activity of a gene under N control interferes with growth in 3057 at low thymidine concentration.     

A transducing lambda phage carrying grpE, a bacterial gene necessary for lambda DNA replication, and two ribosomal protein genes, rpsP (S16) and rplS (L19).

Summary A grpE mutation of Escherichia coli K12, which blocks DNA replication of the phage (Saito and Uchida, 1977), was mapped at 56 min on the standard genetic map. A transducing phage, grpE22, carrying the wild type allele of the grpE gene was constructed in vitro. Structures of grpE22 and its viable deletion derivatives were determined by electron microscopic analyses of appropriate heteroduplexes. Proteins coded by the bacterial DNA incorporated into the transducing phages were detected by two-dimensional gel electrophoresis. The results showed that the product of the grpE gene is a weakly acidic protein of molecular weight 24,000. Structural genes for two ribosomal proteins, rplS (L19) and rpsP (S16) were also shown to be carried by grpE22.     

Molecular cloning of cDNAs for auxin-induced mRNAs and developmental expression of the auxin-inducible genes

By differential hybridization, two auxin-inducible cDNA clones (SAR1 and SAR2) have been isolated from a cDNA library constructed to poly(A)⁺ mRNA from auxin-treated strawberry receptacles. Both the clones have been used as probes to study the expression of the auxin-induced genes in pollinated and unpollinated fruits of various stages of development and in different organs. A high level of auxin-induced mRNAs is found in pollinated fruits as compared to unpollinated fruits of the same age, suggesting that the expression of the auxin-induced genes is developmentally regulated and the level of auxin-induced mRNAs is regulated by endogenous auxin. Furthermore, our data on the expression of SAR1 and SAR2 genes in pollinated and unpollinated fruits revealed a positive correlation between growth of strawberry fruit and the induction of mRNA corresponding to the SAR1 and SAR2 clones. Ethylene has no effect on the expression of the auxin-induced mRNAs. SAR1 mRNA is not detected in other parts of strawberry plants whereas SAR2 mRNA is present in roots. Furthermore, mRNA corresponding to SAR1 and SAR2 is not detected in other auxin-responsive plant systems such as pea epicotyls and bean explants.