The Monophyletic Origin of the Peridinin‐, and Fucoxanthin‐Containing Dinoflagellate Plastid Through Tertiary Replacement

The dinoflagellates contain diverse plastids of uncertain origin. To determine the origin of the peridinin‐ and fucoxanthin‐containing dinoflagellate plastid, we sequenced the plastid‐encoded psaA, psbA, and rbcL genes from various red and dinoflagellate algae. The psbA gene phylogeny, which was made from a dataset of 15 dinoflagellates, 22 rhodophytes, five cryptophytes, seven haptophytes, seven stramenopiles, two chlorophytes, and a glaucophyte as the outgroup, supports monophyly of the peridinin‐, and fucoxanthin‐containing dinoflagellates, as a sister group to the haptophytes. The monophyletic relationship with the haptophytes is recovered in the psbA + psaA phylogeny, with stronger support. The rubisco tree utilized the ‘Form I’ red algal type of rbcL and included fucoxanthin‐containing dinoflagellates. The dinoflagellate + haptophyte sister relationship is also recovered in this analysis. Peridinium foliaceum is shown to group with the diatoms in all the phylogenies. Based on our analyses of plastid sequences, we postulate that: (1) the plastid of peridinin‐, and fucoxanthin‐containing dinoflagellates originated from a common ancestor; (2) the ancestral dinoflagellate acquired its plastid from a haptophyte though a tertiary plastid replacement; (3) ‘Form II’ rubisco replaced the ancestral rbcL after the divergence of the peridinin‐, and fucoxanthin‐containing dinoflagellates; and (4) we confirm that the plastid of P. foliaceum originated from a Stramenopiles endosymbiont.     

Coupling of autotrophic and heterotrophic processes in a Baltic estuarine mixing gradient (Pomeranian Bight)

This paper presents the results of a long-term survey of the hydrography, nutrients and phytoplankton in Tolo Harbour carried out between 1982 and 1992. Some nutrients such as total inorganic nitrogen, ammonia and total phosphorus increased during the 10 year period, but chlorophyll a, which indicated algal biomass, did not show an increasing trend. The phytoplankton of Tolo Harbour consisted largely of diatoms. Dinoflagellates and minor algal groups such as cryptomonads and small flagellates constituted a smaller fraction of the phytoplankton population. Densities of diatoms and minor algal groups increased in some stations, but the density of dinoflagellates remained relatively unchanged during the study period. Most nutrient variables were negatively correlated with densities of diatom and total phytoplankton, and positively correlated with densities of minor algal groups. While dinoflagellate densities were positively correlated with total nitrogen in some stations, no correlation existed between dinoflagellate density and most of the nutrient variables. Our results show that there is a gradual change in phytoplankton community in Tolo Harbour,most notably in the nutrient-rich inner harbour waters, with the smaller algae assuming increasing abundance. Thus there was a net increase in density of total phytoplankton even though chlorophyll a concentrations did not increase. No evidence was found in this study to show that increased nutrient loading would inevitably lead to increase in densities of dinoflagellates in Tolo Harbour. Instead, dinoflagellate densities showed stronger correlations with physical variables such as temperature, pH and salinity. This revised version was published online in August 2006 with corrections to the Cover Date.     

Factors influencing the short-term variation in phytoplankton composition and biomass in coral reef waters

The short-term temporal dynamics of phytoplankton composition was compared among coral reef waters, the adjacent ocean and polluted harbour water from July until October along the south-western coast of Curaçao, southern Caribbean. Temporal variations in phytoplankton pigment 'fingerprints' (zeaxanthin, chlorophyll b, 19'-hexanoyloxyfucoxanthin, fucoxanthin, 19'-butanoyloxyfucoxanthin, chlorophyll c₂ and c₃ relative to chlorophyll a) in the ocean were also observed in waters overlying the reef. However, with respect to specific pigments and algal-size distribution, the algal composition in reef waters was usually slightly different from that in the oceanic water. Phytoplankton biomass (chlorophyll a) was either higher or lower than in the oceanic water. The relative amount of fucoxanthin and peridinin was usually higher, and the relative and absolute amount of zeaxanthin was significantly lower than in oceanic water. Zeaxanthin-containing Synechococci were significantly reduced in reef water. Average algal cell size increased from the open water to the reef and the harbour entrance. Large centric diatoms (>20 m Ø) were better represented in reef than in oceanic water. In reef-overlying waters, the nitrate and nitrite concentrations were higher than in oceanic water. In front of the town, anthropogenic eutrophication (sewage discharge and ground water seepage) resulted in higher NH₄, NO₃ and PO₄ concentrations than at other reef stations. This concurred with significantly enhanced phytoplankton biomass (chlorophyll a), chlorophyll c₂ and peridinin amounts at Town Reef compared with the other reef stations. Polluted harbour water usually showed the highest phytoplankton biomass of all stations, dominated by diatoms and dinoflagellates. Conditions in reef waters and harbour water promoted the occurrence and the relative abundance of diatoms and dinoflagellates. Harbour water did not influence the phytoplankton composition and biomass at reef stations situated >5 km away from the harbour entrance. We conclude that phytoplankton undergoes a shift in algal composition during transit over the reef. The dominant processes appear to be selective removal of zeaxanthin-containing Synechococcus (by the reef benthos) and (relative) increase in diatoms and dinoflagellates. The difference in the phytoplankton composition between reef and oceanic waters tends to increase with decreasing dilution of reef water with ocean water.     

Phytoplankton Assemblages and Their Dominant Pigments in the Nervion River Estuary

In the Nervion River estuary surface samples were taken from March to September 2003 at six sites covering most of the salinity range with the aim to know the biomass and taxonomic composition of phytoplankton assemblages in the different segments. Nine groups of algae including cyanobacteria, diatoms, dinoflagellates, chlorophytes, prasinophytes, euglenophytes, chrysophytes, haptophytes, raphidophytes and cryptophytes were identified by means of a combination of pigment analysis by high-performance liquid chromatography (HPLC) and microscopic observations of live and preserved cells. Diatoms, chlorophytes and cryptophytes were the most abundant algae in terms of cells number, whereas fucoxanthin, peridinin, chlorophyll b (Chl b) and alloxanthin were the most abundant auxiliary pigments. Based on multiple regression analysis, in the outer estuary (stations 0, 1, 2 and 3) about 93% of the chlorophyll a (Chl a) could be explained by algae containing fucoxanthin and by algae containing Chl b, whereas in the rest of the estuary most of the Chl a (about 98%) was accounted for by fucoxanthin, Chl b and alloxanthin containing algae. The study period coincided with that of most active phytoplankton growth in the estuary and fucoxanthin was by far the dominant among those signature pigments. Several diatoms, chrysophytes, haptophytes and raphydophytes were responsible for fucoxanthin among identified species. Besides, dinoflagellates with a pigment pattern corresponding to chrysophytes and type 4 haptophytes were identified among fucoxanthin-bearing algae. Cryptophytes were the most abundant species among those containing alloxanthin. The maximum of Chl b registered at the seaward end in April coincided with a bloom of the prasinophytes Cymbomonas tetramitiformis, whereas the Chl b maxima in late spring and summer were accounted for by prasinophytes in the middle and outer estuary and by several species of chlorophytes in the middle and inner estuary. Other Chl b containing algae were euglenophytes and the dinoflagellate Peridinium chlorophorum. Dinoflagellates constituted generally a minor component of the phytoplankton.     

Structural Confirmation of a Unique Carotenoid Lactoside,P457, in Symbiodinium sp. Strain nbrc 104787 Isolated from a Sea Anemone and its Distribution in Dinoflagellates and Various Marine Organisms

The molecular structure of the carotenoid lactoside P457, (3S,5R,6R,3′S,5′R,6′S)‐13′‐cis‐5,6‐epoxy‐3′,5′‐dihydroxy‐3‐(β‐d ‐galactosyl‐(1→4)‐β‐d ‐glucosyl)oxy‐6′,7′‐didehydro‐5,6,7,8,5′,6′‐hexahydro‐β,β‐caroten‐20‐al, was confirmed by spectroscopic methods using Symbiodinium sp. strain NBRC 104787 cells isolated from a sea anemone. Among various algae, cyanobacteria, land plants, and marine invertebrates, the distribution of this unique diglycosyl carotenoid was restricted to free‐living peridinin‐containing dinoflagellates and marine invertebrates that harbor peridinin‐containing zooxanthellae. Neoxanthin appeared to be a common precursor for biosynthesis of peridinin and P457, although neoxanthin was not found in peridinin‐containing dinoflagellates. Fucoxanthin‐containing dinoflagellates did not possess peridinin or P457; green dinoflagellates, which contain chlorophyll a and b, did not contain peridinin, fucoxanthin, or P457; and no unicellular algae containing both peridinin and P457, other than peridinin‐containing dinoflagellates, have been observed. Therefore, the biosynthetic pathways for peridinin and P457 may have been coestablished during the evolution of dinoflagellates after the host heterotrophic eukaryotic microorganism formed a symbiotic association with red alga that does not contain peridinin or P457.     

Pigment signatures associated with an anoxic coastal zone: Bahia Concepcion, Gulf of California

Bahia Concepcion is a coastal lagoon that has bottom anoxic conditions and high pigment concentrations during the summer. The phytoplankton responsible for this pigment increase is enigmatic, therefore we sampled the lagoon to analyze the pigment with a C8-HPLC system to look for signatures of phytoplankton groups. Analysis reveals a low pigment concentration in the mixed layer with a higher concentration of zeaxanthin and increasing values of chlorophyll a, peridinin, and fucoxanthin below, which peaked at the depth where oxygen dramatically decreases and H(2)S increases. Below this depth, a high pigmentation was recorded and the most important signatures were six chlorophyll-like pigments that eluted between the fucoxanthin and the chlorophyll a, and one carotenoid that eluted just after the chlorophyll a. Spectral characteristics of these last pigments are very similar to pigments present in the Chlorobiales group. These results suggest that cyanobacteria, diatoms, and dinoflagellates are responsible for the chlorophyll a increases, though in highly pigmented samples, anoxygenic phototrophic bacteria are probably the main contributors to the increase in pigments.     

Using absorbance and fluorescence spectra to discriminate microalgae

The utility of absorbance and fluorescence-emission spectra for discriminating among microalgal phylogenetic groups, selected species, and phycobilin- and non-phycobilin-containing algae was examined using laboratory cultures. A similarity index algorithm, in conjunction with fourth-derivative transformation of absorbance spectra, provided discrimination among the chlorophyll [Chl] a/phycobilin (cyanobacteria), Chl a/Chl c/phycobilin (cryptophytes), Chl a/Chl b (chlorophytes, euglenophytes, prasinophytes), Chl a/Chl c/fucoxanthin (diatoms, chrysophytes, raphidophytes) and Chl a/Chl c/peridinin (dinoflagellates) spectral classes, and often between}among closely related phylogenetic groups within a class. Spectra for phylogenetic groups within the Chl a/Chl c/fucoxanthin, Chl a/Chl c/peridinin, Chl a/phycobilins and Chl a/Chl c/phycobilin classes were most distinguishable from spectra for groups within the Chl a/Chl b spectral class. Chrysophytes/diatoms/raphidophytes and dinoflagellates (groups within the comparable spectral classes, Chl a/Chl c/fucoxanthin and Chl a/Chl c/peridinin, respectively) displayed the greatest similarity between/among groups. Spectra for phylogenetic groups within the Chl a/Chl c classes displayed limited similarity with spectra for groups within the Chl/phycobilin classes. Among the cyanobacteria and chlorophytes surveyed, absorbance spectra of species possessing dissimilar cell morphologies were discriminated, with the greatest range of differentiation occurring among cyanobacteria. Among the cyanobacteria, spectra for selected problematic species were easily discriminated from spectra from each other and from other cyanobacteria. Fluorescence-emission spectra were distinct among spectral classes and the similarity comparisons involving fourth-derivative transformation of spectra discriminated the increasing contribution of distinct cyanobacterial species and between phycobilin- and non-phycobilin-containing species within a hypothetical mixed assemblage. These results were used to elucidate the application for in situ moored instrumentation incorporating such approaches in water quality monitoring programmes, particularly those targeting problematic cyanobacterial blooms.     

Effects of Asian dust input on eukaryotic phytoplankton community structure in the open areas in the Northwestern Pacific Ocean

To study the effects of aerosol particulates originated from Asian dust on the growth of eukaryotic phytoplankton in the oligotrophic open ocean, we conducted deck-board incubation experiments in the oligotrophic region of Northwestern Pacific Ocean (NWPO). Our results showed that when dust was added at a concentration of 2?mg/L (Dust-2), the NO₃^–N concentration increased by 3.2 fold, and chlorophyll a (chl a) concentration of nano- and micro-eukaryotic phytoplankton increased, while that of pico-eukaryotic phytoplankton did not change significantly. The microphytoplankton abundance increased but the species number decreased in Dust-2. Community structure of eukaryotic microphytoplankton also changed after dust addition. The abundance of diatoms in Dust-2 (23,072 cells/L) was 4.0 fold of that in the control (5750 cells/L), and 2.4 fold of that in Dust-1 (0.2?mg/L of dust addition) (9425 cells/L) at the 7th day of incubation. Abundance of dinoflagellates decreased in Dust-2, being 42.2% that of the control at the 7th day of the incubation. Effects of dust addition on the growth of phytoplankton differed among the dominant genera: growth of Pseudo-nitzschia and Chaetoceros were promoted while that of Prorocentrum was inhibited, and growth of Thalassiosira, Heterocapsa and Scrippsiella was not influenced significantly. The growth of nano- and pico-eukaryotic phytoplankton was promoted, with the cell abundance in Dust-2 2.4 fold of that in control. Our results indicated that Asian dust-originated aerosol particulates could provide nutrients to the oligotrophic NWPO, increase the marine productivity in the area, and alter the eukaryotic phytoplankton community structure.     

COMBINING NEW TECHNOLOGIES FOR DETERMINATION OF PHYTOPLANKTON COMMUNITY STRUCTURE IN THE NORTHERN GULF OF MEXICO 1

In situ analysis of phytoplankton community structure was determined at five stations along the Texas Gulf coast using two instruments, the Fluoroprobe and FlowCAM. Results were compared with traditional methods to determine community structure (pigment analysis and microscopy). Diatoms and small nanoplankton (most likely haptophytes) dominated the phytoplankton community at all stations. Estimated chl concentrations for diatoms+dinoflagellates obtained via the Fluoroprobe were not significantly different for three of the five stations sampled when compared with HPLC‐chemical taxonomy analysis, whereas the concentrations of green algal and cryptophyte chl were overestimated. The FlowCAM estimates of overall nanoplankton and microplankton cell abundance were not significantly different when compared with epifluorescence microscopy, and recorded images of phytoplankton cells provided a representative population of the phytoplankton community at each station. The Fluoroprobe and FlowCAM, when used in tandem, are potentially capable of determining the general characteristics of phytoplankton community structure in situ and could be an important addition to biological observing systems in the coastal ocean.     

Population dynamics of potentially harmful algal blooms in Bizerte Lagoon,Tunisia

The population dynamics of potentially harmful phytoplankton in the semi-closed, coastal Bizerte Lagoon, Tunisia, in the south-western Mediterranean, were examined from November 2007 to February 2009 at six sampling stations, three situated in areas of mussel and oyster farming. The harmful species monitored included the potential producers of amnesic shellfish poisoning (Pseudo-nitzschia spp.), paralytic shellfish poisoning (Alexandrium spp.), diarrheic shellfish poisoning (Dinophysis spp. and Prorocentrum spp.), ichthyotoxins (Cochlodinium polykrikoides, Akashiwo sanguinea and Karenia mikimotoi), yessotoxins (Gonyaulax spinifera) and the discolouration of water (Neoceratium lineatum and Protoperidinium sp.). These were numerically dominated by potentially toxic species of the diatom genus Pseudo-nitzschia, which were present year-round at all stations. Prorocentrum spp., Dinophysis spp. and Neoceratium lineatum were the most abundant and recurrent harmful dinoflagellates, exhibiting their highest densities at the shellfish farming stations. Alexandrium spp. bloomed only on one occasion, reaching its highest densities at a shellfish farming station. Canonical correspondence analyses revealed significant relationships between the harmful phytoplankton species monitored and the environmental conditions. The widespread distribution of harmful phytoplankton in Bizerte Lagoon, with the permanent presence of Pseudo-nitzschia spp. and the high frequency of dinoflagellate blooms in the shellfish areas, suggests a potential risk of shellfish poisoning events in the region.     

Composition of inorganic and organic nutrient sources influences phytoplankton community structure in the New River Estuary, North Carolina

The New River Estuary, NC, is a nutrient-sensitive, eutrophic water body that is prone to harmful algal blooms. High annual loading from the watershed of varying nutrient forms, including inorganic phosphorus and inorganic and organic nitrogen, may be linked to the persistence of algal blooms in the estuary. In order to evaluate phytoplankton response to nutrient inputs, a series of in situ nutrient addition experiments were carried out during June 2010 to July 2011 on water from an estuarine site known to support algal blooms. Estuarine water was enriched with nutrients consisting of individual and combined sources of dissolved inorganic nitrogen, orthophosphate, urea, and a natural dissolved organic nitrogen (DON) addition derived from upstream New River water. The combined inorganic N and P addition most frequently stimulated phytoplankton biomass production as total chlorophyll a. The responses of diagnostic (of major algal groups) photopigments were also evaluated. Significant increases in peridinin (dinoflagellates), chlorophyll b (chlorophytes), and myxoxanthophyll (cyanobacteria) were most frequently promoted by additions containing riverine DON. Significant increases in zeaxanthin (cyanobacteria) were more frequently promoted by inorganic nitrogen additions, while increases in fucoxanthin (diatoms) and alloxanthin (cryptophytes) were not promoted consistently by any one nutrient treatment. Evaluating the impact of varying nutrient forms on phytoplankton community dynamics is necessary in order to develop strategies to avoid long-term changes in community structure and larger-scale changes in ecosystem condition.     

Different photochemical responses of phytoplankters from the large shallow Taihu Lake of subtropical China in relation to light and mixing

The maximum quantum yield of photosystem II was estimated from variable chlorophyll a fluorescence in samples of phytoplankton collected from the Taihu Lake in China to determine the responses of different phytoplankters to irradiance and vertical mixing. Meteorological and environmental variables were also monitored synchronously. The maximum quantum yield of three phytoplankton groups: cyanobacteria, chlorophytes, and diatoms/dinoflagellates, showed a similar diurnal change pattern. F _v/F _m decreased with a significant depth-dependent variation as irradiance increased during the morning and increased as irradiance declined in the afternoon. Furthermore, the rates of F _v/F _m depression were dependent upon the photon flux density, whereas the rates of recovery of F _v/F _m were dependent upon the historical photon density. Moreover, photoinhibition affected the instantaneous growth rates of phytoplankton. Although at noon cyanobacteria had a higher photoinhibition value (up to 41%) than chlorophytes (32%) and diatoms/dinoflagellates (34%) at the surface, no significant difference in diurnal growth rates among the three phytoplankton groups were observed indicating that cyanobacteria could photoacclimate better than chlorophytes and diatoms/dinoflagellates. In addition, cyanobacteria had a higher nonphotochemical quenching value than chlorophytes and diatoms/dinoflagellates at the surface at noon, which indicated that cyanobacteria were better at dissipating excess energy. The ratios of enclosed bottle samples F _v/F _m to free lake samples F _v/F _m showed different responses for the three phytoplankton groups to irradiance and vertical mixing when wind speed was approximately constant at about 3.0 m s⁻¹. When wind speed was lower than 3.0 m s⁻¹, cyanobacteria accumulated mainly at the surface and 0.3 m, because of their positive buoyancy, where diurnal growth rates of phytoplankton were relatively higher than those at 0.6 m and 0.9 m. Chlorophytes were homogenized completely by vertical mixing, while diatoms/dinoflagellates avoided active high irradiance by moving downward at noon, and then upward again when irradiance decreased. These results explain the dominance of cyanobacteria in Taihu Lake. Handling editor: L. Naselli-Flores     

Phylogeny of nuclear-encoded plastid-targeted GAPDH gene supports separate origins for the peridinin- and the fucoxanthin derivative-containing plastids of dinoflagellates

Although most photosynthetic dinoflagellates have plastids with peridinin, the three dinoflagellate genera Karenia, Karlodinium, and Takayama possess anomalously pigmented plastids that contain fucoxanthin and its derivatives (19′-hexanoyloxy-fucoxanthin and 19′-butanoyloxy-fucoxanthin) instead of the peridinin. This pigment composition is similar to that of haptophytes. All peridinin-containing dinoflagellates investigated so far have at least two types of glyceraldehyde-3-phosphate dehydrogenase (GAPDH): cytosolic and plastid-targeted forms. In the present study, we cloned and sequenced genes encoding cytosolic and plastid-targeted GAPDH proteins from three species of the fucoxanthin derivative-containing dinoflagellates. Based on the molecular phylogeny, the plastid-targeted GAPDH genes of the fucoxanthin derivative-containing dinoflagellates were closely related to those of haptophyte algae rather than to the peridinin-containing dinoflagellates, while one of several cytosolic versions from the peridinin- and the fucoxanthin derivative-containing dinoflagellates are closely related to each other. Considering a previously reported theory that the plastid-targeted GAPDH from the peridinin-containing dinoflagellates originated by a gene duplication of the cytosolic form before the splitting of the dinoflagellate lineage, it is highly likely that the plastid-targeted GAPDH gene of the peridinin-containing dinoflagellates is original in this algal group and that in the fucoxanthin-containing dinoflagellates, the original plastid-targeted GAPDH was replaced by that of a haptophyte endosymbiont during a tertiary endosymbiosis. The present results strongly support the hypothesis that the plastids of the peridinin- and the fucoxanthin derivative-containing dinoflagellates are of separate origin.     

Hyperdiversity of Genes Encoding Integral Light-Harvesting Proteins in the Dinoflagellate Symbiodinium sp

The superfamily of light-harvesting complex (LHC) proteins is comprised of proteins with diverse functions in light-harvesting and photoprotection. LHC proteins bind chlorophyll (Chl) and carotenoids and include a family of LHCs that bind Chl a and c. Dinophytes (dinoflagellates) are predominantly Chl c binding algal taxa, bind peridinin or fucoxanthin as the primary carotenoid, and can possess a number of LHC subfamilies. Here we report 11 LHC sequences for the chlorophyll a-chlorophyll c ₂-peridinin protein complex (acpPC) subfamily isolated from Symbiodinium sp. C3, an ecologically important peridinin binding dinoflagellate taxa. Phylogenetic analysis of these proteins suggests the acpPC subfamily forms at least three clades within the Chl a/c binding LHC family; Clade 1 clusters with rhodophyte, cryptophyte and peridinin binding dinoflagellate sequences, Clade 2 with peridinin binding dinoflagellate sequences only and Clades 3 with heterokontophytes, fucoxanthin and peridinin binding dinoflagellate sequences.     

QUANTIFICATION OF THE RELATIVE ABUNDANCE OF THE TOXIC DINOFLAGELLATE,KARENIA BREVIS (DINOPHYTA), USING UNIQUE PHOTOPIGMENTS1

Diagnostic photopigment analysis is a useful tool for determining the presence and relative abundance of algal groups in natural phytoplankton assemblages. This approach is especially useful when a genus has a unique photopigment composition. The toxic dinoflagellate Karenia brevis (Davis) G. Hansen & Moestrup comb. nov. shares the diagnostic pigment gyroxanthin‐diester with only a few other dinoflagellates and lacks peridinin, one of the major diagnostic pigments of most dinoflagellate species. In this study, measurements of gyroxanthin‐diester and other diagnostic pigments of K. brevis were incorporated into the initial pigment ratio matrix of the chemical taxonomy program (CHEMTAX) to resolve the relative contribution of K. brevis biomass in mixed estuarine phytoplankton assemblages from Florida and Galveston Bay, Texas. The phytoplankton community composition of the bloom in Galveston Bay was calculated based on cell enumerations and biovolumetric measurements in addition to chl a‐specific photopigment estimates of biomass (HPLC and CHEMTAX). The CHEMTAX and biovolume estimates of the phytoplankton community structure were not significantly different and suggest that the HPLC–CHEMTAX approach provides reasonable estimates of K. brevis biomass in natural assemblages. The gyroxanthin‐diester content per cell of K. brevis from Galveston Bay was significantly higher than in K. brevis collected from the west coast of Florida. This pigment‐based approach provides a useful tool for resolving spatiotemporal distributions of phytoplankton in the presence of K. brevis blooms, when an appropriate initial ratio matrix is applied.     

ISOLATION AND CHARACTERIZATION OF PARMALES (HETEROKONTA/HETEROKONTOPHYTA/STRAMENOPILES) FROM THE OYASHIO REGION,WESTERN NORTH PACIFIC1

A small siliceous species of marine phytoplankton, order Parmales (Heterokonta), was isolated and characterized for the first time with the aid of a fluorescent silicon tracer 2‐(4‐pyridyl)‐5‐([4‐(2‐dimethylaminoethylaminocarbamoyl)‐methoxy]phenyl)oxazole (PDMPO). This dye was easily detected by clear fluorescence in newly produced silica cell plates. Our isolate was surrounded by eight smooth plates without any ornamentation, suggesting a similarity to Triparma laevis B. C. Booth. TEM observation showed the typical ultrastructure of photosynthetic heterokontophytes; with two chloroplast endoplasmic reticulate membranes, a girdle lamella, three thylakoid lamellae, and mitochondrion with tubular cristae. Molecular phylogenetic analyses of SSU rDNA and rbcL genes showed that the parmalean alga was within the bolidophycean clade of autotrophic naked flagellates and a sister group of diatoms. HPLC analysis detected chl a, c₁ + c₂, and c₃; fucoxanthin; and diadinoxanthin as major photosynthetic pigments, and a composition that is shared with Bolidophyceae and diatoms. Together, these data indicate a close evolutionary relationship between Parmales, Bolidophyceae, and diatoms. The PDMPO‐staining procedure should accelerate isolation of other Parmales species, helping to establish their diversity and aiding quantitative study of their role in oceanic processes.     

Pigment ratios and phytoplankton assessment in northern Wisconsin lakes

Nine lakes in northern Wisconsin were sampled from February through September 1996, and HPLC analysis of water column pigments was carried out on epilimnetic seston. Pigment distributions were evaluated throughout the water column during summer in Crystal Lake and Little Rock Lake. The purpose of our study was to investigate the use of phytopigments as markers of the main taxonomic groups of algae. As a first approach, multiple regression of marker pigments against chlorophyll a (chl a) was used to derive the best linear combination of the main xanthophylls (peridinin, fucoxanthin, alloxanthin, lutein, and zeaxanthin). A significant regression equation (r²= 0.98) was obtained for epilimnion data. The good fit indicates that the chl a:xanthophyll ratios were fairly constant in the epilimnion of the nine lakes over time. Chlorophyll a recalculated from the main xanthophylls in each sample showed good agreement with measured chl a in epilimnetic waters. A second approach used the CHEMTAX program to analyze the same data set. CHEMTAX provided estimates of chl a biomass for all algal classes and allowed distinction between diatoms and chrysophytes, and between chlorophytes and euglenophytes. These results showed a reasonably good agreement with biomass estimates from microscope counts, despite uncertainties associated with differences in sampling procedure. Changes of pigment ratios over time in the epilimnetic waters were also investigated, as well as differences between surface and deep samples of Little Rock Lake and Crystal Lake. We found evidence that changes in the ratio of photoprotective pigments to chl a occurred as a response to changes in light climate. Changes were also observed for certain light‐harvesting pigments. The comparison between multiple regression and CHEMTAX analyses for inferring chl a biomass from concentrations of marker pigments highlighted the need to take account of variations in pigment ratio, as well as the need to acquire additional data on the pigment composition of planktonic algae.     

Heavy metals inUlva lactuca collected within Tolo Harbour,an almost landlocked sea

Summary The sea lettuce (Ulva lactuca), a littoral and sublittoral marine macroalga grows abundantly around shorewaters of Hong Kong, especially Tolo Harbour whereU.lactuca is collected from the mudflat for local human consumption as well as for export. Samples ofU.lactuca, together with the ambient seawater and sediment, were collected from several localities around Tolo Harbour, an almost land-locked sea, receiving polluted water from several major streams. For comparison samples were also collected from areas near the unpolluted south coast of Hong Kong Island. It was demonstrated that the samples of seawater and sediment collected within Tolo Harbour were polluted from domestic, agricultural and industrial sources. The extent of the metal (copper, lead, zinc and iron) contamination was further reflected and amplified in the tissue ofU.lactuca.     

Phytoplankton structure in the White Sea after summer bloom: Spatial variability in relation to hydrophysical conditions

The species composition and phytoplankton biomass, concentrations of chlorophyll “a” (Chl) and nutrients, concurrent hydrophysical conditions were studied in the south part of the White Sea in July 10–15, 2012 during chlorophyll “a” decrease after summer peak. The water column stability varied, the concentration of dissolved silicon in upper mixed layer was closed to the range favorable for diatoms with exception of areas of intensive tide mixing and areas influenced by waters of Severnaya Dvina River. In surface layer the dinoflagellates dominated excepting of areas with intensive tide mixing where diatoms prevailed. Diatoms provided major contribution to biomass in different stations above, in and under pycnocline and in deep waters out of photic zone. Structural analysis has revealed three phytoplankton communities that corresponded to different depths: communities of photic zone, intermediate and deep layers. Extension of layers inhabited by different communities depended on water column stability and on genesis of water masses. Integrated values of phytoplankton biomass and Chl varied from 250 to 1188 mg С/m², and from 22 to 51 mg/m², correspondently.