Clonal diversity,spatial dynamics,and small genetic population size in the rare sunflower, <Emphasis Type="Italic">Helianthus verticillatus</Emphasis>

Knowledge of population size is an important step for identifying populations of immediate conservation concern. However, this task is difficult in plant species that exhibit clonal growth, since a simple “head count” may not be appropriate. Here, I determine the genetic population size and the extent of clonality in the four known populations of a rare sunflower, Helianthus verticillatus. Previous work in this species revealed high genetic diversity in all populations but significant fitness differences among them. In this study, populations exhibited high clonal diversity but consisted of far fewer genetic individuals than previously reported. Moreover, the clonal structure of populations was clumped, such that genotypes were highly clustered, which may promote selfing among genets. The results of this study are related to previously examined levels of genetic diversity and fitness, and findings are discussed in the context of the ecological and biological dynamics in clonal plant populations. Finally, the results of this study led to an upgrade in the priority status of this species for the Endangered Species List.     

Evolutionary ecology of clonal-bisexual complexes in spined loaches from genus <Emphasis Type="Italic">Cobitis</Emphasis> (Pisces,Cobitidae)

The objective of this work was to analyze several aspects of evolutionary ecology of the spined loach clonal-bisexual complexes. This analysis demonstrates that the twofold population growth rate in clonal forms compared with bisexual species is not a proper feature of spined loaches, because their clonal forms are polyploids with the larger eggs and correspondingly the lower individual fecundity. Both the larger nutrient stores in eggs and the larger hatchlings provide certain ecological advantages for clonal spined loach triploids at early stages of their ontogeny and possibly ensure the higher fitness in a local environment. The clonal-bisexual spined loach complexes have reduced structure usually including one bisexual species and the only clonal form. This reduction may be caused by several factors: 1) the competition between different forms and subsequent superseding of some of them; 2) a particular manner of colonization of new areas by different bisexual and clonal forms; 3) the absorption of one of parental species for hybrid origins of clonal forms (hypothesis of absorption). The relative numbers of bisexual and unisexual forms in different clonal-bisexual complexes depend on “family ties” between clonal forms and “host” bisexual species; their ratios are subjected to temporal dynamics caused by both external (environmental changes) and internal (automatic fluctuating) factors.     

Salt tolerance in Lycopersicon species VI. Genotype-by-salinity interaction in quantitative trait loci detection: constitutive and response QTLs

 A study of genotype-by-salinity interaction was carried out to compare the behavior of quantitative trait loci (QTLs) in two F₂ populations derived from crosses between the cherry tomato, Lycopersicon esculentum Mill. var. cerasiforme, and two wild relatives Lycopersicon pimpinellifolium (Jusl.) Mill. and Lycopersicon chesmannii f. minor (Hook. f.) Mull., grown at two environmental conditions (optimum and high salinity). QTLs for earliness and fruit yield could be classified into four groups: “response-sensitive”, those detected only under control conditions or whose contribution significantly decreased in salinity; “response-tolerant”, detected only in salinity or in which the direction of their additive effects changed; “constitutive”, detected in both growing conditions; and “altered” QTLs, those where the degree of dominance changed according to the presence or absence of salt. Epistatic interactions were also influenced by the salt treatment. This differential allele effect at some (non-constitutive) QTLs induced by salt stress will make selection under an “optimum environment” unfruitful for the “response-tolerant” QTLs. Similarly, selection under salinity will ignore “response-sensitive” QTLs. Given that salinity is highly variable in the field, marker-assisted selection should take into account not only the “response-tolerant” but also the “response-sensitive” QTLs although there might be cases where selection in some QTLs for both conditions is not feasible. Comparing both populations, very few QTLs showed the same behavior. Received: 5 August 1996 / Accepted: 25 October 1996     

Effects of salinity and temperature on Deschampsia antarctica

Deschampsia antarctica is one of two species of vascular plants native to Antarctica. Populations of D. antarctica have become established on recently exposed glacial forelands on the Antarctic Peninsula and these plants may rely upon nutrient inputs from hauled out mammals, seabirds and sea spray. However, not much is known about the ability of these plants to tolerate salinity stress. We examined the effects of salinity and temperature on growth, reproduction, chlorophyll fluorescence and water relations of D. antarctica. In addition, we analysed concentrations of free proline in leaves and roots as previous studies have found large increases in the concentration of this amino acid in response to environmental stress. The growth chamber experiment was a 3 × 3 (temperature × salinity) complete factorial. Plants were grown at three temperature regimes: 7°/7°C, 12°/7°C, and 20°/7°C day/night and three salinity levels: <0.02 decismen per metre (dS m⁻¹; “low salinity”), 2.5 dS m⁻¹ (“medium salinity”), and 5.0 dS m⁻¹ (“high salinity”) for 66 days. Warmer temperatures improved leaf and tiller production as well as leaf and root length, which is consistent with previous findings on this species. Salinity reduced final root length by 6 and 13% in the medium and high-salinity treatments, respectively. Plants growing in medium and high-salinity treatments had xylem pressures that were more negative and higher free-proline concentrations, suggesting that proline may act as an osmoregulant in D. antarctica.     

Genetic variation and clonal structure of the rare,riparian shrub <Emphasis Type="Italic">Spiraea virginiana</Emphasis> (Rosaceae)

Genetic diversity is often considered important for species that inhabit highly disturbed environments to allow for adaptation. Many variables affect levels of genetic variation; however, the two most influential variables are population size and type of reproduction. When analyzed separately, both small population size and asexual reproduction can lead to reductions in genetic variation, although the exact nature of which can be contrasting. Genetic variables such as allelic richness, heterozygosity, inbreeding coefficient, and population differentiation have opposite predictions depending upon the trait (rarity or clonality) examined. The goal of this study was to quantify genetic variation and population differentiation in a species that resides in a highly stochastic environment and is both rare and highly clonal, Spiraea virginiana, and to determine if one trait is more influential genetically than the other. From populations sampled throughout the natural range of S. virginiana, we used microsatellite loci to estimate overall genetic variation. We also calculated clonal structure within populations, which included genotypic richness, evenness, and diversity. Gene flow was investigated by quantifying the relationship between genetic and geographic distances, and population differentiation (θ) among populations. Observed heterozygosity, genotypic richness, and inbreeding coefficients were found to be representative of high clonal reproduction (averaging 0.505, 0.1, and –0.356, respectively) and the number of alleles within populations was low (range = 2.0–3.6), being more indicative of rarity. Population differentiation (θ) among populations was high (average = 0.302) and there was no relationship between genetic and geographic distances. By examining a species that exhibits two traits that both can lead to reduced genetic variation, we may find an enhanced urgency for conservation. Accurate demographic counts of clonal species are rarely, if ever, possible and genetic exploration for every species is not feasible. Therefore, the conclusions in this study can be potentially extrapolated to other riparian, clonal shrubs that share similar biology as S. virginiana.     

Clonal diversity of <Emphasis Type="Italic">Clintonia udensis</Emphasis> Trautv. <Emphasis Type="Italic">et</Emphasis> Mey. populations and its correlation with ecological factors

The clonal diversity of Clintonia udensis Trautv. et Mey. was detected by ISSR markers among 16 populations, and its correlation with ecological factors was analyzed as well in this work. Results showed that individuals (clonal ramets) per genotype were 1.12 and 1.149 at population and species levels, respectively, and that the 16 populations were all multiclonal. The detected genotypes were localized, without exception, within populations but demonstrated relatively high clonal differentiation among populations. The clonal diversity of the studied populations was high, with the average Simpson’s index of 0.975, while the genets showed a clonal architecture of “guerilla”. The population genetic diversities revealed by genet were consistent with those by ramet, further confirming their genetic differentiation among populations. And its genotype diversity within populations probably resulted largely from the frequent seedling regeneration and self-compatibility. In addition, the correlation analysis further revealed that, among the ecological factors, Simpson’s index of C. udensis had a significant positive correlation (P<0.05) with pH values in the soil but not others.     

Use of microsatellite DNA and otolith Sr:Ca ratios to infer genetic relationships and migration history of four morphotypes of <Emphasis Type="Italic">Rhinogobius</Emphasis> sp. OR

The genetic diversity and relationship among four morphotypes of Rhinogobius sp. OR, Gobiidae (“Tōshoku,” “Shinjiko,” “Gi-tōshoku,” and “Shimahire”) were investigated with seven microsatellite DNA loci, and amphidromy of these morphotypes was verified by strontium (Sr) and calcium (Ca) deposition in the otolith. Samples of “Tōshoku,” “Shinjiko,” “Gi-tōshoku,” and “Shimahire” were collected from, respectively, three, three, two, and four locations in Japan. Microsatellite analysis detected high genetic diversity (based on the number of alleles, allelic richness, and average observed heterozygosity) in the “Tōshoku” and “Shinjiko” morphotypes relative to the “Shimahire” morphotype; the “Gi-tōshoku” morphotype had an intermediate level of variation. Almost all pairwise F _ST values were significantly different from zero (P < 0.001), except between two populations of “Tōshoku.” Clear genetic independence was observed between the “Shinjiko” and “Shimahire” morphotypes in the Maruyama River. A principle component analysis based on microsatellite data indicated that the “Tōshoku,” “Shinjiko,” and “Gi-tōshoku” morphotypes were genetically similar. Furthermore, the three populations of “Tōshoku” were closely related each other, and two of those collected from the Lake Biwa system were a single population. There was, however, a high degree of genetic differentiation between “Shimahire” and the other morphotypes; moreover, there was high genetic divergence among four populations of the “Shimahire” morphotype. Amphidromous migratory histories were indicated by Sr:Ca ratios in two of three populations of the “Shinjiko” morphotype and in one of two “Gi-tōshoku” morphotypes, whereas all populations of the “Shimahire” morphotype were freshwater residents. The large genetic divergence and low genetic diversity in “Shimahire” are likely related to migration history.     

Is there a risk to living large? Large size correlates with reduced growth when stressed for knapweed populations

A central hypothesis in ecology is that plant life history evolution is constrained by fundamental “compromises between the conflicting selection pressures resulting from particular combinations of competition, stress, and disturbance”, with stress being defined as abiotic conditions that restrict production. Biogeographic differences among native and non-native ranges of invasive plants may provide unique opportunities for tests of this theory. We conducted a greenhouse experiment with Centaurea stoebe plants from North American and European populations. We compared the total biomass and phenotypic plasticity indices for plants from the native and non-native ranges under stressed and non-stressed conditions. The average size of Centaurea stoebe plants from 13 North American populations was greater than that of plants from 18 European populations regardless of stress treatment. However, when plants from the same populations were exposed to lower resources the differences in biomass between plants from North American and European populations were significantly less, suggesting that large plants were poorer stress tolerators. For all 31 populations the regression slope for the relationship between mean mass for populations in non-stressful conditions and mean mass in stressful conditions was less than 1.0, indicating that populations that produced large plants in good conditions also produced plants that grew disproportionately less in stressful conditions. These findings suggest that Centaurea stoebe may be evolving towards being a good “competitor” (sensu Grime, 1977) in its invasive range, but at the cost of being a good “stress tolerator”.     

Structure of the bank vole (<Emphasis Type="Italic">Myodes glareolus</Emphasis>) population cycles in the core and periphery of its species area

The results of long-term studies of two bank vole (Myodes glareolus) populations in stationary sites in the central part and periphery of its species area are described. Four phases of a multiannual population cycle and two of its structural parts have been detected for both populations. The first part of the cycle is “determined,” with the “peak” phase passing into a “depression” (population collapse). This transition is mainly determined by intrapopulation processes and is weakly dependent on the external conditions of each individual year. The second part is “stochastic,” starting from a stable point in the cycle in the depression phase. The duration of the second part is determined by the state of the population and its ability to increase its size, as well as by the weather and food factors, predation pressure, and location of the population within the species area. The transition from the peak phase to the depression phase (the determined part) for both populations takes place during one fall-winter-spring season and has no effect on the cycle duration. The duration of the stochastic part in the core of the species area (the period from depression phase to peak phase) is 1–3 years and in the periphery, 2–4 years.     

Combined effects of salinity and infectious disease on Daphnia dentifera at multiple scales

相似文献   

Salt tolerance in Lycopersicon spp. VII. Pleiotropic action of genes controlling earliness on fruit yield

 The change from vegetative to reproductive development (earliness) in Lycopersicon chesmannii line L2 was delayed for 20 weeks when compared to other Lycopersicon species under greenhouse conditions. The interspecific hybrid of L. chesmannii L2 and L. esculentum E9, a cherry tomato cultivar, also showed this delay in reproductive development. The distribution of this character in the F₂-derived population showed a bimodal shape, plants could be scored easily as “early” or “late” in two nutrient conditions (optimum and high salinity). A QTL with major effects on earliness was detected in salinity, which explained 35.6% of the phenotypic variation. The effect of this QTL greatly diminished under control conditions, indicating differences in the genetic control of earliness between treatments. ACC synthase or phytochrome B2 are the products of candidate genes for such a major QTL. Other QTLs with minor effects, and epistatic interactions, are also involved in earliness under both conditions. A “late” F₂ subpopulation yielded twice as much as an “early” F₂; conversely, “early” plants were taller than “late” plants, regardless of the treatment. QTL analysis, carried out in both subpopulations, showed that yield differences may be explained by chesmannii alleles showing negative additive effects at some QTLs only in the “early” subpopulation. The effect of population subdivision on QTL analysis was investigated by computer simulations to show sample-size or random effects; thus, important pleiotropic or regulatory effects of genes controlling earliness on yield that affect QTL analysis, have been reveiled. Therefore alleles controlling earliness in L. chesmannii have to be taken into account for a more efficient utilization of the genetic resources of this species. Received: 30 June 1998 / Accepted: 31 August 1998     

Plasticity to daylength of <Emphasis Type="Italic">Iris pumila</Emphasis> leaf phenological traits

 Plastic responses to photoperiod of Iris pumila leaf phenological traits were investigated in two populations experiencing contrasting light conditions in the dune system at Deliblato Sands (44°48′ N, 38°58′ E; Serbia, Yugoslavia). The population “Dune” occupied an exposed area at the top and slope of a relatively large dune, and the population “Woods” was situated in the understory of a Pinus nigra stand. Plants developed from rhizome segments of 15 and 12 clonal genotypes sampled individually in an exposed and a shaded site, respectively, were grown under alternating daylength conditions (long day, 16 h; short day, 8 h) in an environmentally controlled growth room, and scored for a number of leaf traits (live and senescent leaf number per ramet, leaf longevity, and phyllochron). The photoperiodic treatments used significantly affected the phenotypic values of all traits analyzed, regardless of the population origin. Leaf longevity decreased, whereas the proportion of senescent to live leaves increased under short as compared to long photoperiod. The amount of plasticity to daylength appeared to be strongly trait specific: senescent leaf number was the most plastic, and live leaf number per ramet the least plastic trait, in both populations. The factorial ANOVAs did not reveal a significant population effect on any of the leaf traits observed, except the phyllochron, indicating the presence of genetic variation between populations only for that particular trait. A statistically significant interaction term obtained in each of the ANOVAs provides the evidence of the existence of genetic variation for plasticity in all the leaf phenological traits studied. Genetic correlations among all trait pairs were close to zero and mostly statistically nonsignificant, indicating that the analyzed I. pumila leaf phenological traits are not genetically constrained to evolve by natural selection toward their optimal reaction norms within each light habitat. Received: September 17, 2002 / Accepted: February 28, 2003     

Growth advantage (“clonal dominance”) of metastatically competent tumor cell variants expressed under selective two- or three-dimensional tissue culture conditions

Summary In previous experiments it was shown that injection into syngeneic CBA/J mice of cell mixtures containing an excess of non-metastatic SP1 mouse mammary carcinoma cells with aras transfected metastatic variant of SP1 called C1, always resulted in the eventual dominance of the C1 subpopulation at the site of inoculation. This occurred despite the growth rates of the two cell populations being identical in vivo when grown separately. The means by which the C1 subpopulation achieved “clonal dominance” is thought to involve its responsiveness to stimulatory paracrine growth factors liberated by the non-metastatic SP1 population. The clonal dominance process, however, could not be recapitulated in conventional monolayer tissue culture conditions in which SP1 and C1 cells were grown together in high concentrations of serum, i.e. under non-limiting culture conditions. We now show that clonal dominance of C1 cells can be observed when the cell mixture is maintained in tissue culture for extended periods, or when the cells are grown under selective, limiting conditions, some of which may mimic growth conditions in vivo more accurately. These conditions were a) growth in low (limiting) serum concentrations; and b) growth as three-dimensional multicellular aggregates, i.e. as “tumor spheroids”. Under all of these conditions dominance of the C1 subpopulation always took place, but with an efficiency 6- to 40-fold less than generally observed in vivo. C1 cells were also able to form more stable (compact) spheroids compared to SP1 cells. Entrapment of the latter in mixed C1/SP1 spheroids increased the recovery of the SP1 cells suggesting some kind of “rescue” mechanism in which cells are protected from physical forces by three-dimensional structure. The relevance of these in vitro interactions for clonal dominance in primary tumors and metastasis in vivo are discussed.     

Bergmann's rule in larval ant lions: testing the starvation resistance hypothesis

Abstract.  1. Body size of the ant lion Myrmeleon immaculatus follows Bergmann's rule – an increase in body size towards higher latitudes. The hypothesis that ant lion body size is larger in the north as an adaptation for starvation resistance was tested.
2. In a laboratory experiment testing starvation resistance, survivorship curves differed among 10 ant lion populations for both a starved and a fed treatment.
3. The average number of months survived by each population was correlated positively with latitude for both treatments. Across both treatments and all populations, large individuals survived longer than small individuals; however individuals from high latitudes had higher survivorship, even after factoring out variation due to initial body size.
4. These results suggest that starvation resistance may be an adaptation for coping with reduced prey availability in high latitudes. Starvation resistance may contribute to latitudinal gradients in body size of ant lions and other ectotherms.     

Intraspecific genetic polymorphism of Russian sturgeon <Emphasis Type="Italic">Acipenser gueldenstaedtii</Emphasis>

Three populations (Azov, Caspian, and Black Sea) of Russian sturgeon Acipenser queldenstaedtii were tested for polymorphism at nuclear (RAPD and microsatellites) and mitochondrial (PCR identification of two mitotypes) markers. In addition, morphometric analysis of he representatives of Azov population was carried out. According to the morphological characters, the Black Sea population occupied an intermediate position between the Caspian and Azov populations, reflecting the phylogeography of this species. In agreement with the morphometric data, genetic distances (the data of STR analysis) also placed the Black Sea population between the Caspian and Azov populations (F _ST = 0.058 and 0.043). The genetic distance between the Azov and Caspian population was somewhat higher (F _ST = 0.070). The highest allelic polymorphism at four microsatellite loci was found observed in Caspian population, while the lowest polymorphism was in the Sea of Azov. RAPD analysis distinguished high polymorphism within the populations, although it was not feasible for interpopulation analysis. Using the method differentiating the “baerii-like” and typical “gueldenstaedtii” mitotypes, the absence of the “baerii-like” marker in the Black Sea population was demonstrated. The frequency of this marker in Caspian and Azov populations constituted 31.1 and 1.8%, respectively. Possible evolutionary reasons for the interpopulation differences observed are discussed.     

Resolving the limitation – regulation debate

Many recent ecological studies have demonstrated that animal populations are limited by their food. Examples are presented here to refute the view that natural populations are regulated by negative feedback mortality factors. Additionally, several incorrect statements in a recent publication are discussed, specifically (1) that there is no difference between the concepts of regulation and limitation; (2) that the debate is about what causes the time it takes a population to reach the carrying capacity of its habitat, not what sets that carrying capacity; (3) that the results of a laboratory experiment using a closed population with fixed amounts of food represents what happens in natural open populations with varying supplies of food; (4) that a thermostat analogy can be used, assuming that an “equilibrium” is controlling natural populations “from above” instead of the original steam analogy which says the varying input of a resource “from below” is the controlling factor.     

Pulses of movement across the sea ice: population connectivity and temporal genetic structure in the arctic fox

Lemmings are involved in several important functions in the Arctic ecosystem. The Arctic fox (Vulpes lagopus) can be divided into two discrete ecotypes: “lemming foxes” and “coastal foxes”. Crashes in lemming abundance can result in pulses of “lemming fox” movement across the Arctic sea ice and immigration into coastal habitats in search for food. These pulses can influence the genetic structure of the receiving population. We have tested the impact of immigration on the genetic structure of the “coastal fox” population in Svalbard by recording microsatellite variation in seven loci for 162 Arctic foxes sampled during the summer and winter over a 5-year period. Genetic heterogeneity and temporal genetic shifts, as inferred by STRUCTURE simulations and deviations from Hardy–Weinberg proportions, respectively, were recorded. Maximum likelihood estimates of movement as well as STRUCTURE simulations suggested that both immigration and genetic mixture are higher in Svalbard than in the neighbouring “lemming fox” populations. The STRUCTURE simulations and AMOVA revealed there are differences in genetic composition of the population between summer and winter seasons, indicating that immigrants are not present in the reproductive portion of the Svalbard population. Based on these results, we conclude that Arctic fox population structure varies with time and is influenced by immigration from neighbouring populations. The lemming cycle is likely an important factor shaping Arctic fox movement across sea ice and the subsequent population genetic structure, but is also likely to influence local adaptation to the coastal habitat and the prevalence of diseases.     

Costs versus benefits: best possible and best practical treatment regimens for HIV

Current HIV therapy, although highly effective, may cause very serious side effects, making adherence to the prescribed regimen difficult. Mathematical modeling may be used to evaluate alternative treatment regimens by weighing the positive results of treatment, such as higher levels of helper T cells, against the negative consequences, such as side effects and the possibility of resistance mutations. Although estimating the weights assigned to these factors is difficult, current clinical practice offers insight by defining situations in which therapy is considered “worthwhile”. We therefore use clinical practice, along with the probability that a drug-resistant mutation is present at the start of therapy, to suggest methods of rationally estimating these weights. In our underlying model, we use ordinary differential equations to describe the time course of in-host HIV infection, and include populations of both activated CD4⁺ T cells and CD8⁺ T cells. We then determine the best possible treatment regimen, assuming that the effectiveness of the drug can be continually adjusted, and the best practical treatment regimen, evaluating all patterns of a block of days “on” therapy followed by a block of days “off” therapy. We find that when the tolerance for drug-resistant mutations is low, high drug concentrations which maintain low infected cell populations are optimal. In contrast, if the tolerance for drug-resistant mutations is fairly high, the optimal treatment involves periods of reduced drug exposure which consequently boost the immune response through increased antigen exposure. We elucidate the dependence of the optimal treatment regimen on the pharmacokinetic parameters of specific antiviral agents.     

Genetic diversity and relationship of clonal tea (<Emphasis Type="Italic">Camellia sinensis</Emphasis>) cultivars in China as revealed by SSR markers

Tea plant [Camellia sinensis (L.) O.Kuntze)] is one of the most popular non-alcoholic beverage crops in the world today. In recent years, many clonal tea cultivars have been developed and widely planted to replace the diverse traditional tea populations. In this article, we study the relationships between classifications based on simple sequence repeat (SSR) markers and on morphological traits for 185 tea plant cultivars. Results show that the genetic diversity index (H) is between 0.229 and 0.803, and the mean value is 0.543; the observed heterozygosity (H _o) ranges from 0.103 to 0.683, with an average of 0.340, while the genetic identity varies from 0.267 to 0.984. Based on tea-making properties, the genetic diversity in the “black-green tea” group is much higher than in the “Oolong tea” group. Based on morphological traits, cluster analysis classifies the 185 cultivars into three groups, “group I,” “group II” and “group III.” Most cultivars are related based on the geographical origin and their genetic backgrounds.     

放牧干扰对根茎冰草无性系种群年龄结构的影响

根茎冰草（Agropyron michnoi)是典型的无性系禾草。在松嫩平原,根茎冰草的分蘖节最老为４龄,可存活５个年度。不同季节的放牧干扰可导致根茎冰草无性系种群分蘖株的年龄结构发生变化,全年放牧样地和夏秋休牧样地均为稳定型年龄结构,两个冬季放牧样地均为增长型年龄结构。１龄分蘖株的生产力和营养繁殖力力均最大。４龄分蘖株均已丧失了营养繁殖力。营养繁殖芽的年龄结构可以更好地预测预报无性系种群和群落的未来。全年放牧可保护稳定型年龄结构,冬季放牧可保持增长型年龄结构,夏秋休牧可使种群发展为增长型年龄结构,两个冬季放牧样地将仍然保持单优势种群落,全年放牧地将仍为混生群落,夏季林牧样地具有向着单优势种群落演替的潜在趋势。