Biosecurity Conditions in Small Commercial Chicken Farms,Bangladesh 2011–2012

In Bangladesh, highly pathogenic avian influenza H5N1 is endemic in poultry. This study aimed to understand the biosecurity conditions and farmers’ perception of avian influenza biosecurity in Bangladeshi small commercial chicken farms. During 2011–2012, we conducted observations, in-depth interviews and group discussions with poultry farmers in 16 farms and in-depth interviews with seven local feed vendors from two districts. None of the farms were completely segregated from people, backyard poultry, other animals, households, other poultry farms or large trees. Wild birds and rodents accessed the farms for poultry feed. Farmers usually did not allow the buyers to bring egg trays inside their sheds. Spraying disinfectant in the shed and removing feces were the only regular cleaning and disinfection activities observed. All farmers sold or used untreated feces as fish feed or fertilizer. Farmers were more concerned about Newcastle disease and infectious bursal disease than about avian influenza. Farmers’ understanding about biosecurity and avian influenza was influenced by local vendors. While we seldom observed flock segregation, some farmers used measures that involved additional cost or effort to protect their flocks. These farmers could be motivated by interventions to protect their investment from diseases they consider harmful. Future interventions could explore the feasibility and effectiveness of low-cost alternative biosecurity measures.     

The Interplay among Acorn Abundance and Rodent Behavior Drives the Spatial Pattern of Seedling Recruitment in Mature Mediterranean Oak Forests

The patterns of seedling recruitment in animal-dispersed plants result from the interactions among environmental and behavioral variables. However, we know little on the contribution and combined effect of both kinds of variables. We designed a field study to assess the interplay between environment (vegetation structure, seed abundance, rodent abundance) and behavior (seed dispersal and predation by rodents, and rooting by wild boars), and their contribution to the spatial patterns of seedling recruitment in a Mediterranean mixed-oak forest. In a spatially explicit design, we monitored intensively all environmental and behavioral variables in fixed points at a small spatial scale from autumn to spring, as well as seedling emergence and survival. Our results revealed that the spatial patterns of seedling emergence were strongly related to acorn availability on the ground, but not by a facilitationeffect of vegetation cover. Rodents changed seed shadows generated by mother trees by dispersing most seeds from shrubby to open areas, but the spatial patterns of acorn dispersal/predation had no direct effect on recruitment. By contrast, rodents had a strong impact on recruitment as pilferers of cached seeds. Rooting by wild boars also reduced recruitment by reducing seed abundance, but also by changing rodent’s behavior towards higher consumption of acorns in situ. Hence, seed abundance and the foraging behavior of scatter-hoarding rodents and wild boars are driving the spatial patterns of seedling recruitment in this mature oak forest, rather than vegetation features. The contribution of vegetation to seedling recruitment (e.g. facilitation by shrubs) may be context dependent, having a little role in closed forests, or being overridden by directed seed dispersal from shrubby to open areas. We warn about the need of using broad approaches that consider the combined action of environment and behavior to improve our knowledge on the dynamics of natural regeneration in forests.     

Rodent control at different spatial scales on poultry farms in the province of Buenos Aires,Argentina

In poultry farms of central Argentina rodents cause economic losses by the consumption and contamination of chicken food, and also pose a serious sanitary risk as transmitters of several diseases to human and domestic animals, such as leptospirosis, salmonellosis, trichinosis, hantavirus pulmonary syndrome, hantavirus renal syndrome, and Argentine hemorrhagic fever. Because one of the problems in controlling rodents is recolonization from the surroundings, we wanted to assess the effect of control measures applied at different spatial scales on rodent abundance in farm sheds. The treatments applied were the following: anticoagulant application in farms and their surroundings (F + S), anticoagulant application only within farms (F), and standard management (C). Rodent abundance was assessed previous to treatments (t₀), at the moment of bait removal (t₁), and after 15 (t₂), 30 (t₃), and 60 days (t₄). Differences in rodent abundance between t₀ and t₁, t₂, t_3, and t₄ were compared among treatments by means of a Kruskal Wallis test. We only found significant differences among treatments between t₀ and t₂, where F and F + S treatments showed differences with respect to the C treatment. This result suggests that the effect of control measures was due to the control of the perimeter, and not of farther areas. Also, reproduction of remaining individuals may have contributed to the population recovery in sheds of experimental farms. We conclude that more effective control must include the perimeter of the farm, but the effect of control of more distant areas may depend on the characteristics of the particular farm, its surroundings, and the ecology of the species involved.     

Infection pattern of the spirurid nematode Protospirura numidica criceticola in the cricetid rodent Akodon azarae on poultry farms of central Argentina

The nematode Protospirura numidica criceticola infects the stomach of Neotropical cricetid rodents when they ingest infected arthropods. In North America, prevalence values fluctuated, showing marked peaks in desert habitats, while remaining low in humid environments. The infection pattern has not been studied in South American rodents. In this work, yearly infection by P. n. criceticola was analysed in the South American cricetid Akodon azarae seasonally captured from July 1998 to July 2000 and in March 2001 on poultry farms of a humid region of Argentina. Seasonal occurrence of third- and fourth-stage larvae and adults was recorded. Seasonal population and community parameters of the parasite were calculated. The occurrence of larval stages was confirmed for the four seasons. Prevalence fluctuated between 0 and 36% and did not show a seasonal pattern. It was not related to the abundance of A. azarae (rs = 0.37) or to rainfall. In this humid region of Argentina, where food resources are diverse throughout the year, the omnivorous A. azarae may have a variable diet so that infection can occur in the four seasons. Prevalence values were not very high, in accordance with observations in humid habitats of North America. The infection was also characterized by low intensity, abundance and dominance. Only 3.8% of the rodents were parasitized with three or more specimens of the parasite, and that was only in autumn. It is suggested that rodents can not overwinter successfully with a heavy biomass of stomach parasites.     

Of mice and mallards: positive indirect effects of coexisting prey on waterfowl nest success

Coexisting prey species interact indirectly via their shared predators when one prey type influences predation rates of the second prey type. In a temperate system where the predominant shared predator is a generalist, I studied the indirect effects of rodent populations on waterfowl nest success, both within the nesting season among sites and among years. Among six to ten upland fields (14 to 27 ha), mallard ( Anas platyrhynchos ) nest success was positively correlated with rodent abundance in all three years of the study. After removing year effects, mallard nest success remained positively correlated with the relative abundance of rodents. Of the rodent species present, California voles ( Microtus californicus ) were the most important coexisting prey type influencing nest success. Among years, mallard nest success was positively correlated with vole abundance; the asymptotic relationship suggests a threshold response to vole abundance, beyond which predators become satiated and additional voles do little to affect nest success. I tested and rejected three alternative explanations for the observed positive correlation between mallard nest success and rodent abundance that do not involve an indirect effect of coexisting prey populations. The influences of dense nesting cover, nesting density, and predator activity did not explain the observed patterns of nest success. These results suggest that rodent populations buffer predation on waterfowl nests, both within and among years, via the behavioral responses of shared predators to coexisting prey.     

Impacts of Agriculture on the Diet and Productivity of Mackinder's Eagle Owls (Bubo capensis mackinderi ) in Kenya

Land conversion for agriculture is an increasing threat to biodiversity conservation, but its ecological effects on African birds is practically unknown. We investigated the impacts of agriculture on the diet and productivity of a small, disjunct population of Mackinder's eagle owls ( Bubo capensis mackinderi  ) in central Kenya. Owl diet was determined by analysis of pellets and other remains and compared to small mammal populations estimated by live trapping in two habitats. Small mammal abundance was low and averaged 7.4 small mammals/ha in farms and 0.5 small mammals/ha in grassland. Owls consumed a wide diversity of prey. The majority were mammals (87%) followed by birds (7%) and insects (5%). The percentage of small mammals in owl diet correlated positively with the relative abundance of small mammals during monthly trapping sessions. Diet composition did not influence owl breeding success. Farming activities affected owl diet composition through crop production. The amount of maize, peas, and carrots growing in farms was correlated with the abundance of Mastomys sp. and Procavia sp. in the owl's diet. Agricultural activities had a large effect on Mackinder's eagle owl diet by increasing the abundance of certain small-mammal prey and attracting owl prey to farms, though farming practices harmful to owls were observed.     

Biogeography of parasite abundance: latitudinal gradient and distance decay of similarity in the abundance of fleas and mites,parasitic on small mammals in the Palearctic,at three spatial scales

We tested whether biogeographic patterns characteristic for biological communities can also apply to populations and investigated geographic patterns of variation in abundance of ectoparasites (fleas and mites) collected from bodies of their small mammalian hosts (rodents and shrews) in the Palearctic at continental, regional and local scales. We asked whether (i) there is a relationship between latitude and abundance and (ii) similarity in abundance follows a distance decay pattern or it is better explained by variation in extrinsic biotic and abiotic factors. We analysed the effect of latitude on mean intraspecific abundance using general linear models including proportional abundance of its principal host as an additional predictor variable. Then, we examined the relative effect of geographic distance, biotic and abiotic dissimilarities among regions, subregions or localities on the intraspecific dissimilarity in abundance among regions, subregions or localities using Generalized Dissimilarity Modelling. We found no relationship between latitude and intraspecific flea or mite abundance. In both taxa, environmental dissimilarity explained the largest part of the deviance of spatial variation in abundance, whereas the effect of the dissimilarity in the principal host abundance was of secondary importance and the effect of geographic distance was minor. These patterns were generally consistent across the three spatial scales, although environmental variation and dissimilarity in principal host abundance were equally important at the local scale in fleas but not in mites. We conclude that biogeographic patterns related to latitude and geographic distance do not apply to spatial variation of ectoparasite abundance. Instead, the geographic distribution of abundance in arthropod ectoparasites depends on their responses, mainly to the off-host environment and to a lesser extent the abundance of their principal hosts.     

Spatial and temporal abundance,substrate partitioning and species co-occurrence in a guild of Neotropical blackflies (Diptera: Simuliidae)

Blackfly larvae were sampled monthly from two smallNeotropical mountain streams 500 m apart from each other in northernVenezuela during a 15-month period, and ten habitat variables weremeasured at two altitudes (800 and 900 m) to determine local spatialand temporal variations in abundance, stream variables, speciesco-occurrence, and substrate preference within the blackflyguild. The blackfly species composition of each stream was the same,with five species (in order of abundance): Simulium ochraceumWalker s.l., S. paynei Vargas, S. metallicum Bellardicytospecies E, Simulium sp., and S. horacioi Okazawa &Onishi. There were clear differences in community structurebetween streams (not among altitudes), although S. ochraceums.l. was the most abundant species in both habitats. Principal component andcorrelation analyses revealed that structural (great depth, width,flow, and discharge) and chemical (low conductivity) factors werethe stream variables best associated to the spatial distribution ofmost blackfly species. Blackfly abundance was greater in the largerstream. Larvae were most abundant on submerged rocks and fallenleaves, although the patterns of substrate use within the guildrevealed substrate partitioning among most blackfly species.There was one general annual peak of abundance at the end of therainy season. We suggest that blackfly community structure in theseNeotropical headwaters streams, over the small spatial scaleexamined here, is largely influenced by interactions among streamsize and velocity-related factors (width, streamflow, discharge andsubstrate availability-stability) and the rainfall regime.     

Factors influencing the relative abundance of invasive predators and omnivores on islands

Invasive alien species (IAS) are the major cause of native species extinctions on islands worldwide. To mitigate or eliminate IAS impacts, eradication is often the best alternative. However, IAS removal may result in cascading effects, through increase in prey abundance, mesopredator release, or competitor release. Our objective is to determine which ecological processes may influence the relative abundance of invasive carnivores and rodents on an insular system. We find that feral cat and mustelids relative abundance was strongly related by prey abundance, and for the feral cat, abundance was also controlled by habitat; these results suggest that bottom-up control through environmental filtering could be the mechanism explaining predator abundance. For rodents, we find that the abundance of the black rat was mostly controlled by the abundance of Norway rat and house mice, and food availability; the Norway rat by the abundance of black rat, a house mice and of mustelid predators; and house mouse by the other rodents and food availability. These results suggest that several mechanisms could be concurrently controlling abundance of these species; competition and predation for Norway rat, and competition and bottom-up control by environmental filtering for the other two rodents. While different factors explain the abundance of invasive species within the same functional group, food resource availability is, in general, the main controller of abundance of invasive rodents and carnivores in the Azores. Therefore, IAS management actions in these islands should focus on limiting the access to food resources and shelter, mainly near to human populations.

     

Effect of Salmonella vaccination of breeder chickens on contamination of broiler chicken carcasses in integrated poultry operations

While measures to control carcass contamination with Salmonella at the processing plant have been implemented with some success, on-farm interventions that reduce Salmonella prevalence in meat birds entering the processing plant have not translated well on a commercial scale. We determined the impact of Salmonella vaccination on commercial poultry operations by monitoring four vaccinated and four nonvaccinated breeder (parental) chicken flocks and comparing Salmonella prevalences in these flocks and their broiler, meat bird progeny. For one poultry company, their young breeders were vaccinated by using a live-attenuated Salmonella enterica serovar Typhimurium vaccine (Megan VAC-1) followed by a killed Salmonella bacterin consisting of S. enterica serovar Berta and S. enterica serovar Kentucky. The other participating poultry company did not vaccinate their breeders or broilers. The analysis revealed that vaccinated hens had a lower prevalence of Salmonella in the ceca (38.3% versus 64.2%; P < 0.001) and the reproductive tracts (14.22% versus 51.7%; P < 0.001). We also observed a lower Salmonella prevalence in broiler chicks (18.1% versus 33.5%; P < 0.001), acquired from vaccinated breeders, when placed at the broiler farms contracted with the poultry company. Broiler chicken farms populated with chicks from vaccinated breeders also tended to have fewer environmental samples containing Salmonella (14.4% versus 30.1%; P < 0.001). There was a lower Salmonella prevalence in broilers entering the processing plants (23.4% versus 33.5%; P < 0.001) for the poultry company that utilized this Salmonella vaccination program for its breeders. Investigation of other company-associated factors did not indicate that the difference between companies could be attributed to measures other than the vaccination program.     

14-3-3 and enolase abundances in the CSF of Prion diseased rats

ABSTRACT

Creutzfeldt-Jakob disease (CJD) is characterized by an extended asymptomatic preclinical phase followed by rapid neurodegeneration. There are no effective treatments. CJD diagnosis is initially suspected based upon the clinical presentation of the disease and the exclusion of other etiologies. Neurologic symptoms are assessed in combination with results from cerebrospinal fluid (CSF) biomarker abundances, electroencephalography (EEG), magnetic resonance imaging (MRI), and in some countries, real-time quaking-induced conversion (RT-QuIC). Inconsistencies in sensitivities and specificities of prion disease biomarker abundance in CSF have been described, which can affect diagnostic certainty, but the utility of biomarkers for prognosis has not been fully explored. The clinical presentation of CJD is variable, and factors such as prion protein polymorphic variants, prion strain, and other genetic or environmental contributions may affect the disease progression, confounding the appearance or abundance of biomarkers in the CSF. These same factors may also affect the appearance or abundance of biomarkers, further confounding diagnosis. In this study, we controlled for many of these variables through the analysis of serial samples of CSF from prion-infected and control rats. Prion disease in laboratory rodents follows a defined disease course as the infection route and time, prion strain, genotype, and environmental conditions are all controlled. We measured the relative abundance of 14-3-3 and neuron-specific enolase (NSE) in CSF during the course of prion infection in rats. Even when disease-related, environmental and genetic variables were controlled, CSF 14-3-3 and NSE abundances were variable. Our study emphasizes the considerable diagnostic and prognostic limitations of these prion biomarkers.     

Contribution of Company Affiliation and Social Contacts to Risk Estimates of Between-Farm Transmission of Avian Influenza

Background

Models of between-farm transmission of pathogens have identified service vehicles and social groups as risk factors mediating the spread of infection. Because of high levels of economic organization in much of the poultry industry, we examined the importance of company affiliation, as distinct from social contacts, in a model of the potential spread of avian influenza among broiler poultry farms in a poultry-dense region in the United States. The contribution of company affiliation to risk of between-farm disease transmission has not been previously studied.

Methodology/Principal Findings

We obtained data on the nature and frequency of business and social contacts through a national survey of broiler poultry growers in the United States. Daily rates of contact were estimated using Monte Carlo analysis. Stochastic modeling techniques were used to estimate the exposure risk posed by a single infectious farm to other farms in the region and relative risk of exposure for farms under different scenarios. The mean daily rate of vehicular contact was 0.82 vehicles/day. The magnitude of exposure risk ranged from <1% to 25% under varying parameters. Risk of between-farm transmission was largely driven by company affiliation, with farms in the same company group as the index farm facing as much as a 5-fold increase in risk compared to farms contracted with different companies. Employment of part-time workers contributed to significant increases in risk in most scenarios, notably for farms who hired day-laborers. Social visits were significantly less important in determining risk.

Conclusions/Significance

Biosecurity interventions should be based on information on industry structure and company affiliation, and include part-time workers as potentially unrecognized sources of viral transmission. Modeling efforts to understand pathogen transmission in the context of industrial food animal production should consider company affiliation in addition to geospatial factors and pathogen characteristics. Restriction of social contacts among farmers may be less useful in reducing between-farm transmission.     

A Two-Year Ecological Study of Norway Rats (Rattus norvegicus) in a Brazilian Urban Slum

The Norway or brown rat (Rattus norvegicus) is among the most ubiquitous of rodents. However, the lack of studies describing Norway rat populations from tropical areas have limited our understanding regarding their demography and seasonal dynamics. In this study, we describe seasonal pattern in the abundance, reproductive parameters, and morphometrics of Norway rat populations in Salvador, Brazil. Rodents were trapped over four seasonal trapping periods (2013–2014) from three valleys. A total of 802 Norway rats were trapped over the course of the study over 7653 trap-nights. Norway rat abundance was high, but there was no significant differences between seasons. The reproductive parameters (e.g. frequency of pregnant and lactating females) did not show statistical differences between seasons. Female rats collected in the rainy season were heavier and older than females from the dry season. Salvador rats had a high incidence of pregnancy and birth rate (estimated birth rate of 79 young per year) compared to previous studies. The information generated is critical for the understanding of the ecology of Norway rat, the main reservoir of Leptospira in Salvador. However, future studies examining the effect of rodent control programs aimed at reducing populations, and determining rates of recovery, will further clarify our understanding of population dynamics.     

Genetic characterization and antibiotic resistance of Campylobacter spp. isolated from poultry and humans in Senegal

AIMS: The main objectives of this study were to investigate the diversity of Campylobacter genotypes circulating in Senegal and to determine the frequency of antibiotic resistance. METHODS AND RESULTS: Strains of Campylobacter jejuni isolated from poultry (n = 99) and from patients (n = 10) and Campylobacter coli isolated from poultry (n = 72) were subtyped by pulsed-field gel electrophoresis (PFGE). The pulsotypes obtained after digestion by SmaI and KpnI revealed a significant genetic diversity in both species, but without any predominant pulsotypes. However, farm-specific clones were identified in the majority of poultry houses (76.5%). Human and poultry isolates of C. jejuni had common PFGE patterns. High quinolone-resistance rates were observed for C. jejuni (43.4%) and C. coli (48.6%) isolates obtained from poultry. CONCLUSIONS: The results showed a genetic diversity of Campylobacter between farms indicating multiple sources of infection; but specific clones had the ability to colonize the broiler farms. The antimicrobial resistance patterns were not related to any specific PFGE pattern suggesting that resistance was due to the selective pressure of antibiotic usage. Campylobacter with similar genotypes were circulating in both human and poultry. SIGNIFICANCE AND IMPACT OF THE STUDY: This study is important for the understanding of the epidemiology of Campylobacter in broiler farms in Senegal. It also emphasizes the need for a more stringent policy in the use of antimicrobial agents in food animals.     

Diversity of the helminth community of the Pampean grassland mouse (Akodon azarae) on poultry farms in central Argentina

This paper describes the helminth community of the Pampean grassland mouse (Akodon azarae) inhabiting poultry farms in central Argentina. Winter diversity (season of high rodent abundance) has been compared to spring diversity (season of low rodent abundance). Species richness was seven in both seasons: five nematodes (Syphacia carlitosi, Stilestrongylus spp., Trichuris laevitestis, Pterygodermatites (Paucipectines) azarai and Protospirura numidica criceticola) and two cestodes (adults of Cyclophyllidea and Taenia taeniaeformis hepatic cysts). No difference in richness was detected between host sexes in each season or among host age classes. However, the helminth community showed 67% similarity between winter and spring, with diversity being significantly higher in spring (H = 0.873) than in winter (H = 0.546; P < 0.0005). This could be attributed to different factors, such as host abundance, host diet or environmental factors, that affect the transmission of each species differently. On the other hand, Stilestrongylus spp. and S. carlitosi showed higher dominance and intensity in both seasons compared to their cohabiting species, P. (P.) azarai and T. laevitestis, respectively. The lower values of the latter two species may be related to a crowding effect due to their large body sizes. This is the first report of cestodes in A. azarae. The finding of T. taeniaeformis strobilocerci could be important in the epidemiology of parasitosis in domestic animals of the farms.     

An investigation of difenacoum resistance in Norway rat populations in Hampshire

Observations are presented to show that resistance to difenacoum, a rodenticide commonly used for the control of warfarin-resistant rodents, is widespread in populations of the Norway rat, Rattus norvegicus, in an area centred in north-east Hampshire. Of 202 rats trapped on 42 farms in this district and tested in the laboratory, 85% were resistant to warfarin and 14% were resistant to difenacoum. Only rats that were resistant to warfarin showed difenacoum resistance, indicating it to be a form of cross resistance. The difenacoum-resistant rats survived a dose of difenacoum that was lethal to more than 99% of susceptibles, but succumbed when this dose was increased fivefold. The results of four treatments carried out with difenacoum on farms illustrate that this level of resistance seriously reduces the effectiveness of difenacoum as a rodenticide in the field.     

Lawsonia intracellularis in rodents from pig farms with the occurrence of porcine proliferative enteropathy

Aim:  Lawsonia intracellularis is an obligate intracellular bacterium causing proliferative enteropathy in certain species of domestic, laboratory and captive animals. The aim of our study was to detect L. intracellularis in free-living rodents from pig farms in the Czech Republic.
Methods and Results:  Lawsonia intracellularis was demonstrated, using nested polymerase chain reaction, in the intestinal mucous membranes of 107 (36%) out of 296 small terrestrial mammals collected. In rodents, the bacterium was detected in 91 of 213 house mice, one of six brown rats, eight of 51 striped field mice, three of 12 yellow-necked mice and three of nine common voles. Moreover, one of one tested lesser white-toothed shrew (Insectivora) was positive. In 17 out of 69 (25%) rodents tested, serum IgG antibodies against L. intracellularis were detected using an indirect immunofluorescence antibody test. All seropositive animals were house mice.
Conclusions:  Free-living rodents may be serving as host or reservoir species and may be playing a role in the spread of L. intracellularis both within pig farms and in its transmission between farms and into the natural environment.
Significance and Impact of the Study:  This is the first detection of L. intracellularis in free-living small mammalian terrestrial species.     

Different Environmental Drivers of Highly Pathogenic Avian Influenza H5N1 Outbreaks in Poultry and Wild Birds

A large number of highly pathogenic avian influenza (HPAI) H5N1 outbreaks in poultry and wild birds have been reported in Europe since 2005. Distinct spatial patterns in poultry and wild birds suggest that different environmental drivers and potentially different spread mechanisms are operating. However, previous studies found no difference between these two outbreak types when only the effect of physical environmental factors was analysed. The influence of physical and anthropogenic environmental variables and interactions between the two has only been investigated for wild bird outbreaks. We therefore tested the effect of these environmental factors on HPAI H5N1 outbreaks in poultry, and the potential spread mechanism, and discussed how these differ from those observed in wild birds. Logistic regression analyses were used to quantify the relationship between HPAI H5N1 outbreaks in poultry and environmental factors. Poultry outbreaks increased with an increasing human population density combined with close proximity to lakes or wetlands, increased temperatures and reduced precipitation during the cold season. A risk map was generated based on the identified key factors. In wild birds, outbreaks were strongly associated with an increased Normalized Difference Vegetation Index (NDVI) and lower elevation, though they were similarly affected by climatic conditions as poultry outbreaks. This is the first study that analyses the differences in environmental drivers and spread mechanisms between poultry and wild bird outbreaks. Outbreaks in poultry mostly occurred in areas where the location of farms or trade areas overlapped with habitats for wild birds, whereas outbreaks in wild birds were mainly found in areas where food and shelters are available. The different environmental drivers suggest that different spread mechanisms might be involved: HPAI H5N1 spread to poultry via both poultry and wild birds, whereas contact with wild birds alone seems to drive the outbreaks in wild birds.