KcsA通道对Na+、K+及Rb+离子选择性的统计热力学研究

钾离了的通透率至少比钠离子的通透率大10000倍,这个问题至今没有很好地解决,为了存分子水平阐释钾离子通道的选择性机制,以KcsA钾通道X射线衍射结构为基础,采用密度泛函理论计算了不同离子在离子通道中的位能．计算结果表明,Rb^ 离子具有与K^ 离子相类似的位能曲线,但是其在通透过程遇到的位垒要比K^ 离子的位垒高,因而所对应的通透率也就小十钾离子的通透率,而钠离子的的通透率仅仅足钾离子通透率的0．0067％．文中所涉及的系统仪仅包含269个原子,而用分子动力学虽然也可以得到相近的结果,但是它的系统火小为41000个原子．     

酸雨作用下的森林冠层盐基离子(Ca2+,Mg2+,K+)淋洗

在韶山针阔叶混交林中设立了10个30 m×30 m的样方,对1年中各个季节的森林截留沉降、降雨后树冠层总滤出量、盐基离子滤出量以及树冠层对H+和NH4+的摄入量进行了分析和估算.韶山森林湿沉降成分中以Ca2+为主,Mg2+,K+含量较低.树冠层盐基离子总滤出量中Ca2+最高,达到155.34 mmo1 m-2a-1,Mg2+最低,为30.74mmol m-2a-1,K+居中,为84.13 mmol m-2a-1.Ca2+的大量滤出表明它是树冠层缓冲降水酸度的主要介质,同时也表明酸雨对韶山森林的潜在危害,其在总滤出量中的比重的季节变化是夏(58.4%)＞春(54.1%)＞冬(51.4%)＞秋(32.5%).盐基离子的滤出量以冬→春→夏→秋依次递减,但是树冠层季节摄入NH4的量在30-100mmo1 m-2而对H+的摄入量则在30-180 mmol m-2.     

植物Shaker K+通道的研究进展

钾离子通道是植物钾离子吸收的重要途径之一。Shaker K+家族通道是K+通道中最早发现、且研究最深入的K+通道家族。近年来,已从多种植物或同种植物的不同组织器官中分离得到多个Shaker K+钾离子通道基因,如AKT1,AtKC1,QsAKT1,GORK,AKT2等。从结构、表达部位、生理功能和调控等方面介绍了植物Shaker K+通道的研究进展。     

Fe2+、Cu2+、Zn2+对植物生理特性影响的比较分析

以浸水处理为对照系统分析了Fe2+、Cu2+、Zn2+等金属离子对植物胁迫损伤相关的7个生理指标,并应用数理统计学和生物化学的相关原理和方法从氧自由基伤害的角度比较分析了这三种离子处理对植物生理特性的影响。结果表明:不同离子处理由于对植物造成的胁迫损伤不同,因而它们对植物生理特性的影响效应也有明显差异,并且这种差异与其所处理的离子胁迫性质间存在显著的关联性。     

Cd2+和Pb2+对花翅摇蚊(Chironomus kiiensis)幼虫生长发育的影响及富集效应

河流、湖泊等水生环境中普遍存在的重金属污染破坏水生生态系统并间接威胁人类健康。为探究重金属胁迫下水生昆虫花翅摇蚊（Chironomus kiiensis）生态毒理,测定了重金属Cd²⁺和Pb²⁺胁迫对花翅摇蚊化蛹率和羽化率的影响,检测了摇蚊的口器致畸与富集效应。研究结果表明,Cd²⁺和Pb²⁺影响摇蚊幼虫化蛹和羽化过程,单一重金属离子处理14 d Pb²⁺处理组的化蛹率和羽化率分别为22.22%和8.89%,低于Cd²⁺的化蛹率（25.56%）和羽化率（11.11%）,表现出更强的抑制效应。混合离子1：2和2：1配比处理组化蛹率和羽化率均为11.11%和4.44%,显著低于单一重金属离子胁迫下的化蛹率和羽化率。单一重金属离子及混合离子处理均能导致花翅摇蚊幼虫口器致畸,表现为上颚前齿断裂,中齿和基齿磨损、缺失,下唇板齿部不规则,下唇板边缘齿与中央齿磨损、断裂、增生、缺失。不同重金属离子处理下幼虫口器致畸率不同,并与暴露时间呈正相关,其中1：2配比处理14 d致畸率达到40.61%。重金属离子在摇蚊幼虫体内产生生物富集效应,单一重金属离子处理下的Pb²⁺富集含量7 d至14 d由11.46 mg/kg上升至31.32 mg/kg,不同配比混合离子处理下Pb²⁺富集含量均呈增加趋势,其中1：2配比处理组由15.48 mg/kg上升至42.50 mg/kg,而Cd²⁺在单一重金属与1：1混合离子处理组7 d至14 d的富集含量无显著性变化,2：1配比处理组由14.20 mg/kg下降至9.52 mg/kg,1：2配比由5.85 mg/kg上升至20.99 mg/kg。这些研究结果表明Cd²⁺和Pb²⁺胁迫影响花翅摇蚊幼虫生长发育且口器出现畸型,与重金属在幼虫体内的富集密切相关,为研究重金属对水生生态系统多重效应提供了理论依据。     

S2–和Na+胁迫下黄河三角洲高潮滩芦苇光合作用和抗氧化酶活性的响应

潮汐湿地的土壤硫含量和钠离子含量很高, 然而该生境中的S²–以及S^2–与Na⁺联合胁迫对植物生理生态影响认识不足。以黄河三角洲高潮滩芦苇为材料, 进行了对比实验(S2–浓度相同处理: 50 mmol·L^–1 Na₂S VS. 50 mmol·L^–1 K₂S处理; Na⁺离子浓度相同处理: 40 mmol·L^–1 Na₂S VS. 80 mmol·L^–1 NaCl处理), 研究了S^2–、Na⁺的联合胁迫以及它们的单独胁迫对芦苇的光合作用及抗氧化酶活性的影响差异。结果表明: Na₂S比K₂S和NaCl处理对芦苇光合速率的抑制作用更显著, 因此S^2–和Na⁺的联合胁迫比它们的单独胁迫作用更强。对于抗氧化酶活性, 50 mmol·L^–1 Na₂S处理后过氧化氢(H₂O₂)、过氧化物酶(POD)、超氧化物歧化酶(SOD)浓度显著升高, 说明在抵御S^2–和Na⁺离子胁迫时, POD和SOD发挥重要的作用, 而在 Na₂S处理下, 过氧化氢酶(CAT)则呈显著下降的趋势。总之, 硫和钠离子的同时存在严重抑制高潮滩芦苇的光合速率, 而POD和SOD、CAT对于抵御S2–和Na+胁迫起到重要的作用。     

可口革囊星虫对Cd2+和Hg2+的富集及其影响

采用原子吸收、原子荧光等分析检测技术,探讨了Cd²⁺、Hg²⁺在可口革囊星虫中的富集规律及其对生长与主要营养成分的影响.结果表明: 在试验设定的胁迫浓度内,可口革囊星虫体壁肌肉对Cd²⁺、Hg²⁺的富集均随胁迫时间的延长而增加,最终达到饱和浓度;环境中Cd²⁺、Hg²⁺浓度越高,富集速度越快,达到饱和的时间越短,饱和浓度也越高.可口革囊星虫体质量增长随着重金属胁迫浓度的升高而减慢,且联合胁迫的影响程度大于单一胁迫.体壁肌肉蛋白质含量随重金属胁迫浓度的增加而升高,Cd²⁺、Hg²⁺分别在0.05和0.02 mg·L^-1胁迫浓度下达到最高,然后开始降低.联合胁迫也呈同样的规律,且影响程度更大.体壁肌肉脂肪含量随重金属胁迫浓度的增加而降低,联合胁迫下降低程度更大.     

NaHCO3胁迫下3种灌木Na+、K+、Ca2+的吸收及转运

通过盆栽试验,采用原子吸收分光光度法和非损伤微测技术,研究了NaHCO₃胁迫(300 mmol·L^-1)对大洋洲滨藜、四翅滨藜和宁夏枸杞3种灌木离子吸收及运转的影响.结果表明: 随着NaHCO₃浓度升高,两种滨藜和宁夏枸杞叶片中Na⁺含量升高,300 mmol·L^-1NaHCO₃胁迫下,宁夏枸杞叶肉细胞Na⁺的外排增加,两种滨藜净Na⁺外排降低;随着胁迫时间的延长,大洋洲滨藜和宁夏枸杞叶片的K⁺含量下降,Na⁺/K⁺升高,四翅滨藜叶片K⁺含量升高,Na⁺/K⁺降低;随着浓度的升高,宁夏枸杞叶片积累Ca²⁺减少,Na⁺/Ca²⁺高于对照,叶肉细胞Ca²⁺外排;两种滨藜叶Ca²⁺含量总体呈升高趋势,叶肉细胞Ca²⁺表现为内流.在NaHCO₃胁迫下,3种灌木通过不同的策略来消除Na⁺毒害.宁夏枸杞叶片Na⁺的积累抑制了对Ca²⁺的吸收;两种滨藜Ca²⁺的内流促使细胞质中游离Ca²⁺增加,增加的细胞质\[Ca²⁺\]cyt防治质膜H⁺ ATPase去极化,限制K⁺的外排,从而维持细胞内Na⁺/K⁺的平衡,其中四翅滨藜调控Na⁺/K⁺平衡的能力较强.     

匍茎翦股颖对Cu2+、Zn2+、Cd2+与Pb2+ 胁迫的生长响应与阈限浓度

采用砂培法,研究了匍茎翦股颖对Cu2+、Zn2+、Cd2+与Pb2+胁迫的生长响应及阈限浓度,结果表明:种子萌发率随着4种重金属浓度的增加而下降。对株高的影响是当重金属浓度小于100mg/L时会促进株高生长,高于100mg/L则产生抑制作用。Cu2+显著抑制根系生长,并随浓度的增加抑制效应愈加显著;在Cu2+浓度为600mg/L时匍茎翦股颖的根长比对照下降了93.75%。Cu2+、Zn2+、Pb2+浓度小于200mg/L时会促进地上生物量的增加,但高于200mg/L时,地上生物量会随着3种重金属的增加而减少。Cu2+、Zn2+浓度小于100mg/L或Cd2+、Pb2+浓度小于200mg/L会增加叶绿素的含量,高浓度会降低叶绿素的含量;Cd2+在浓度为600mg/L时显著降低叶绿素含量,与对照相比,下降了43.55%。匍茎翦股颖生长的综合效应分析表明,匍茎翦股颖对Cu2+胁迫最敏感,具有较低的阈限浓度,而Zn2+胁迫对匍茎翦股颖的生长影响最小,阈限浓度相对较高。     

氯通道膜蛋白内部Cl-/H+耦合转运机制研究进展

氯通道是细胞膜上一类离子选择性跨膜蛋白,其功能是调节细胞内部溶液pH、细胞容积、盐类离子转运以及细胞电兴奋性。按照离子输运方式的差异,氯通道膜蛋白可分为氯离子通道和Cl^-/H⁺转运体两类,其中Cl^-/H⁺转运体内部的离子转运过程具有显著耦合性,且该过程需要借助水分子参与。本文针对Cl^-/H⁺耦合转运微观机制研究进行总结及展望,为氯通道实验研究、临床疾病诊治和新药研发提供理论依据。     

Selectivity and permeation of alkali metal ions in K+-channels

Ion conduction in K⁺-channels is usually described in terms of concerted movements of K⁺ progressing in a single file through a narrow pore. Permeation is driven by an incoming ion knocking on those ions already inside the protein. A fine-tuned balance between high-affinity binding and electrostatic repulsive forces between permeant ions is needed to achieve efficient conduction. While K⁺-channels are known to be highly selective for K⁺ over Na⁺, some K⁺ channels conduct Na⁺ in the absence of K⁺. Other ions are known to permeate K⁺-channels with a more moderate preference and unusual conduction features. We describe an extensive computational study on ion conduction in K⁺-channels rendering free energy profiles for the translocation of three different alkali ions and some of their mixtures. The free energy maps for Rb⁺ translocation show at atomic level why experimental Rb⁺ conductance is slightly lower than that of K⁺. In contrast to K⁺ or Rb⁺, external Na⁺ block K⁺ currents, and the sites where Na⁺ transport is hindered are characterized. Translocation of K⁺/Na⁺ mixtures is energetically unfavorable owing to the absence of equally spaced ion-binding sites for Na⁺, excluding Na⁺ from a channel already loaded with K⁺.     

K+-Dependent Selectivity and External Ca2+ Block of Shab K+ Channels

Potassium channels allow the selective flux of K⁺ excluding the smaller, and more abundant in the extracellular solution, Na⁺ ions. Here we show that Shab is a typical K⁺ channel that excludes Na⁺ under bi-ionic, Na_o/K_i or Na_o/Rb_i, conditions. However, when internal K⁺ is replaced by Cs⁺ (Na_o/Cs_i), stable inward Na⁺ and outward Cs⁺ currents are observed. These currents show that Shab selectivity is not accounted for by protein structural elements alone, as implicit in the snug-fit model of selectivity. Additionally, here we report the block of Shab channels by external Ca²⁺ ions, and compare the effect that internal K⁺ replacement exerts on both Ca²⁺ and TEA block. Our observations indicate that Ca²⁺ blocks the channels at a site located near the external TEA binding site, and that this pore region changes conformation under conditions that allow Na⁺ permeation. In contrast, the latter ion conditions do not significantly affect the binding of quinidine to the pore central cavity. Based on our observations and the structural information derived from the NaK bacterial channel, we hypothesize that Ca²⁺ is probably coordinated by main chain carbonyls of the pore´s first K⁺-binding site.     

Dynamics, Energetics, and Selectivity of the Low-K KcsA Channel Structure

Potassium channels are a diverse family of integral membrane proteins through which K⁺ can pass selectively. There is ongoing debate about the nature of conformational changes associated with the opening/closing and conductive/nonconductive states of potassium channels. The channels partly exert their function by varying their conductance through a mechanism known as C-type inactivation. Shortly after the activation of K⁺ channels, their selectivity filter stops conducting ions at a rate that depends on various stimuli. The molecular mechanism of C-type inactivation has not been fully understood yet. However, the X-ray structure of the KcsA channel obtained in the presence of low K⁺ concentration is thought to be representative of a K⁺ channel in the C-type inactivated state. Here, extensive, fully atomistic molecular dynamics and free-energy simulations of the low-K⁺ KcsA structure in an explicit lipid bilayer are performed to evaluate the stability of this structure and the selectivity of its binding sites. We find that the low-K⁺ KcsA structure is stable on the timescale of the molecular dynamics simulations performed, and that ions preferably remain in S1 and S4. In the absence of ions, the selectivity filter evolves toward an asymmetric architecture, as already observed in other computations of the high-K⁺ structure of KcsA and KirBac. The low-K⁺ KcsA structure is not permeable by Na⁺, K⁺, or Rb⁺, and the selectivity of its binding sites is different from that of the high-K⁺ structure.     

Energy distribution and ion selectivity of the bacterial potassium channel

The ion selectivity of the bacterial potassium channel K_CSA is explained upon comparing the energy characteristics of the interaction of cations (Li⁺, Na⁺, K⁺) with atoms of the selectivity filter of the protein pore. Quantum-chemical calculations reveal a deeper potential well for potassium ions, which accounts for preferred K⁺ permeation. It is shown that the conventional methods with AMBER, CHARMM, OPLS force fields in standard parametrization as well as partial re-parametrization give incorrect estimates of ion energy distribution in the channel.     

The Link between Ion Permeation and Inactivation Gating of Kv4 Potassium Channels

Kv4 potassium channels undergo rapid inactivation but do not seem to exhibit the classical N-type and C-type mechanisms present in other Kv channels. We have previously hypothesized that Kv4 channels preferentially inactivate from the preopen closed state, which involves regions of the channel that contribute to the internal vestibule of the pore. To further test this hypothesis, we have examined the effects of permeant ions on gating of three Kv4 channels (Kv4.1, Kv4.2, and Kv4.3) expressed in Xenopus oocytes. Rb⁺ is an excellent tool for this purpose because its prolonged residency time in the pore delays K⁺ channel closing. The data showed that, only when Rb⁺ carried the current, both channel closing and the development of macroscopic inactivation are slowed (1.5- to 4-fold, relative to the K⁺ current). Furthermore, macroscopic Rb⁺ currents were larger than K⁺ currents (1.2- to 3-fold) as the result of a more stable open state, which increases the maximum open probability. These results demonstrate that pore occupancy can influence inactivation gating in a manner that depends on how channel closing impacts inactivation from the preopen closed state. By examining possible changes in ionic selectivity and the influence of elevating the external K⁺ concentration, additional experiments did not support the presence of C-type inactivation in Kv4 channels.     

Anomalous Effect of Permeant Ion Concentration on Peak Open Probability of Cardiac Na+ Channels

Human heart Na⁺ channels were expressed transiently in both mammalian cells and Xenopus oocytes, and Na⁺ currents measured using 150 mM intracellular Na⁺. Decreasing extracellular permeant ion concentration decreases outward Na⁺ current at positive voltages while increasing the driving force for the current. This anomalous effect of permeant ion concentration, especially obvious in a mutant (F1485Q) in which fast inactivation is partially abolished, is due to an alteration of open probability. The effect is only observed when a highly permeant cation (Na⁺, Li⁺, or hydrazinium) is substituted for a relatively impermeant cation (K⁺, Rb⁺, Cs⁺, N -methylglucamine, Tris, choline, or tetramethylammonium). With high concentrations of extracellular permeant cations, the peak open probability of Na⁺ channels increases with depolarization and then saturates at positive voltages. By contrast, with low concentrations of permeant ions, the open probability reaches a maximum at approximately 0 mV and then decreases with further depolarization. There is little effect of permeant ion concentration on activation kinetics at depolarized voltages. Furthermore, the lowered open probability caused by a brief depolarization to +60 mV recovers within 5 ms upon repolarization to −140 mV, indicative of a gating process with rapid kinetics. Tail currents at reduced temperatures reveal the rapid onset of this gating process during a large depolarization. A large depolarization may drive a permeant cation out of a site within the extracellular mouth of the pore, reducing the efficiency with which the channel opens.     

Ion binding properties and structure stability of the NaK channel

Ion distribution in the selectivity filter and ion-water and ion-protein interactions of NaK channel are systematically investigated by all-atom molecular dynamics simulations, with the tetramer channel protein being embedded in a solvated phospholipid bilayer. Analysis of the simulation results indicates that K⁺ ions prefer to bind within the sites formed by two adjacent planes of oxygen atoms from the selectivity filter, while Na⁺ ions are inclined to bind to a single plane of four oxygen atoms. At the same time, both K⁺ and Na⁺ ions can diffuse in the vestibule, accompanying with movements of the water molecules confined in a complex formed by the vestibule together with four small grottos connecting to it. As a result, K⁺ ions show a wide range of coordination numbers (6-8), while Na⁺ ions display a constant coordination number of ∼ 6 in the selectivity filter, which may result in the loss of selectivity of NaK. It is also found that a Ca²⁺ can bind at the extracellular site as reported in the crystal structure in a partially hydrated state, or at a higher site in a full hydration state. Furthermore, the carbonyl group of Asp66 can reorient to point towards the center pore when an ion exists in the vestibule, while that of Gly65 always aligns tangentially to the channel axis, as in the crystallographic structures.     

Ion conduction and selectivity in acid-sensing ion channel 1

The ability of acid-sensing ion channels (ASICs) to discriminate among cations was assessed based on changes in conductance and reversal potential with ion substitution. Human ASIC1a was expressed in Xenopus laevis oocytes, and acid-induced currents were measured using two-electrode voltage clamp. Replacement of extracellular Na⁺ with Li⁺, K⁺, Rb⁺, or Cs⁺ altered inward conductance and shifted the reversal potentials consistent with a selectivity sequence of Li ∼ Na > K > Rb > Cs. Permeability decreased more rapidly than conductance as a function of atomic size, with P_K/P_Na = 0.1 and G_K/G_Na = 0.7 and P_Rb/P_Na = 0.03 and G_Rb/G_Na = 0.3. Stimulation of Cl⁻ currents when Na⁺ was replaced with Ca²⁺, Sr²⁺, or Ba²⁺ indicated a finite permeability to divalent cations. Inward conductance increased with extracellular Na⁺ in a hyperbolic manner, consistent with an apparent affinity (K_m) for Na⁺ conduction of 25 mM. Nitrogen-containing cations, including NH₄⁺, NH₃OH⁺, and guanidinium, were also permeant. In addition to passing through the channels, guanidinium blocked Na⁺ currents, implying competition for a site within the pore. The role of negative charges in an external vestibule of the pore was evaluated using the point mutation D434N. The mutant channel had a decreased single-channel conductance, measured in excised outside-out patches, and a macroscopic slope conductance that increased with hyperpolarization. It had a weakened interaction with Na⁺ (K_m = 72 mM) and a selectivity that was shifted toward larger atomic sizes. We conclude that the selectivity of ASIC1 is based at least in part on interactions with binding sites both within and internal to the outer vestibule.     

Ionic interactions of Ba2+ blockades in the MthK K+ channel

The movement and interaction of multiple ions passing through in single file underlie various fundamental K⁺ channel properties, from the effective conduction of K⁺ ions to channel blockade by Ba²⁺ ions. In this study, we used single-channel electrophysiology and x-ray crystallography to probe the interactions of Ba²⁺ with permeant ions within the ion conduction pathway of the MthK K⁺ channel. We found that, as typical of K⁺ channels, the MthK channel was blocked by Ba²⁺ at the internal side, and the Ba²⁺-blocking effect was enhanced by external K⁺. We also obtained crystal structures of the MthK K⁺ channel pore in both Ba²⁺–Na⁺ and Ba²⁺–K⁺ environments. In the Ba²⁺–Na⁺ environment, we found that a single Ba²⁺ ion remained bound in the selectivity filter, preferably at site 2, whereas in the Ba²⁺–K⁺ environment, Ba²⁺ ions were predominantly distributed between sites 3 and 4. These ionic configurations are remarkably consistent with the functional studies and identify a molecular basis for Ba²⁺ blockade of K⁺ channels.