Isolation and biochemical characterization of extracellular polymeric secretions (EPS) from modern soft marine stromatolites (Bahamas) and its inhibitory effect on CaCO3 precipitation

Bahamian soft marine stromatolites consist of cyanobacterial biofilms and carbonate sand grains (ooids) embedded in their extracellular polymeric secretions (EPS). EPS were isolated from natural marine stromatolites and the laboratory cultured stromatolite forming cyanobacterium isolate Schizothix sp. Laboratory investigations were conducted to examine biochemical characteristics and the role of EPS in the inhibition of CaCO3 precipitation. EPS consisted of acid polysaccharides and proteins. SDS-PAGE and amino acid analysis suggested that EPS from both soft marine stromatolite and Schizothrix sp. mat contained small proteins (38 kD and 45 kD) enriched in aspartic acid and glutamic acid. Also, immuno blotting suggested that natural EPS contain high molecular weight acid polysaccharide (500 k) which may represent cross-linked products of laboratory cultured Schizothrix sp. acid polysaccharide (300 k). EPS from both soft marine stromatolite and laboratory cultured Schizothrix sp. inhibited CaCO3 precipitation in vitro, as determined using pH drift assays examining pH decrease which occur in response to CaCO3 precipitation. PH drift assays of enzymatically and chemically modified EPS isolated from soft marine stromatolite and laboratory cultured Schizothrix sp. indicated that both uronic acids and protein fractions may be involved in the inhibition of CaCO3 precipitation.     

Molecular indicators of microbial diversity in oolitic sands of Highborne Cay,Bahamas

Microbialites (stromatolites and thrombolites) are mineralized mat structures formed via the complex interactions of diverse microbial‐mat communities. At Highborne Cay, in the Bahamas, the carbonate component of these features is mostly comprised of ooids. These are small, spherical to ellipsoidal grains characterized by concentric layers of calcium carbonate and organic matter and these sand‐sized particles are incorporated with the aid of extra‐cellular polymeric substances (EPS), into the matrix of laminated stromatolites and clotted thrombolite mats. Here, we present a comparison of the bacterial diversity within oolitic sand samples and bacterial diversity previously reported in thrombolitic and stromatolitic mats of Highborne Cay based on analysis of clone libraries of small subunit ribosomal RNA gene fragments and lipid biomarkers. The 16S‐rRNA data indicate that the overall bacterial diversity within ooids is comparable to that found within thrombolites and stromatolites of Highborne Cay, and this significant overlap in taxonomic groups suggests that ooid sands may be a source for much of the bacterial diversity found in the local microbialites. Cyanobacteria were the most diverse taxonomic group detected, followed by Alphaproteobacteria, Gammaproteobacteria, Planctomyces, Deltaproteobacteria, and several other groups also found in mat structures. The distributions of intact polar lipids, the fatty acids derived from them, and bacteriohopanepolyols provide broad general support for the bacterial diversity identified through analysis of nucleic acid clone libraries.     

Modern marine stromatolites in the Exuma Cays,Bahamas: Uncommonly common

Summary Modern stromatolites in open marine environments, unknown until recently, are common throughout the Exuma Cays, Bahamas. They occur in three distinct settings: subtidal tidal passes, subtidal sandy embayments and intertidal beaches. These stromatolites have a relief of up to 2.5 m and occur in water depths ranging from intertidal to 10 m. Surfaces near the sediment-water interface are typically colonized by cyanobacterial mats, whereas high relief surfaces are commonly colonized by algal turf and other macroalgae such asBatophora, Acetabularia, andSargassum. The internal structure of the stromatolites is characterized by millimeter-scale lamination defined by differential lithification of agglutinated sediment. In thin section, the lithified laminae appear as micritic horizons with distinct microstructures: they consist of thin micritic crusts (20–40 μm thick) overlying layers of micritized sediment grains (200–1000 μm thick); the micritized grains are cemented at point-contacts and are trucated along a surface of intense microboring. The Exuma stromatolites are built by cyanobacterial-dominated communities. These laminated prokaryotic structures grade to unlayered thrombolites built by eukaryotic algae. The variety of sites, settings and shapes of stromatolites in the Exuma Cays present excellent opportunities for future studies of stromatolite morphogenesis.     

Organic-rich bimineralic ooids record biological processes in Shark Bay,Western Australia

Marine ooids have formed in microbially colonized environments for billions of years, but the microbial contributions to mineral formation in ooids continue to be debated. Here we provide evidence of these contributions in ooids from Carbla Beach, Shark Bay, Western Australia. Dark 100–240 μm diameter ooids from Carbla Beach contain two different carbonate minerals. These ooids have 50–100 μm-diameter dark nuclei that contain aragonite, amorphous iron sulfide, detrital aluminosilicate grains and organic matter, and 10–20 μm-thick layers of high-Mg calcite that separate nuclei from aragonitic outer cortices. Raman spectroscopy indicates organic enrichments in the nuclei and high-Mg calcite layers. Synchrotron-based microfocused X-ray fluorescence mapping reveals high-Mg calcite layers and the presence of iron sulfides and detrital grains in the peloidal nuclei. Iron sulfide grains within the nuclei indicate past sulfate reduction in the presence of iron. The preservation of organic signals in and around high-Mg calcite layers and the absence of iron sulfide suggest that organics stabilized high-Mg calcite under less sulfidic conditions. Aragonitic cortices that surround the nuclei and Mg-calcite layers do not preserve microporosity, iron sulfide minerals nor organic enrichments, indicating growth under more oxidizing conditions. These morphological, compositional, and mineralogical signals of microbial processes in dark ooids from Shark Bay, Western Australia, record the formation of ooid nuclei and the accretion of magnesium-rich cortical layers in benthic, reducing, microbially colonized areas.     

Grain trapping by filamentous cyanobacterial and algal mats: implications for stromatolite microfabrics through time

Archean and Proterozoic stromatolites are sparry or fine‐grained and finely laminated; coarse‐grained stromatolites, such as many found in modern marine systems, do not appear until quite late in the fossil record. The cause of this textural change and its relevance to understanding the evolutionary history of stromatolites is unclear. Cyanobacteria are typically considered the dominant stromatolite builders through time, but studies demonstrating the trapping and binding abilities of cyanobacterial mats are limited. With this in mind, we conducted experiments to test the grain trapping and binding capabilities of filamentous cyanobacterial mats and trapping in larger filamentous algal mats in order to better understand grain size trends in stromatolites. Mats were cut into squares, inclined in saltwater tanks at angles from 0 to 75° (approximating the angle of lamina in typical stromatolites), and grains of various sizes (fine sand, coarse sand, and fine pebbles) were delivered to their surface. Trapping of grains by the cyanobacterial mats depended strongly on (i) how far filaments protruded from the sediment surface, (ii) grain size, and (iii) the mat's incline angle. The cyanobacterial mats were much more effective at trapping fine grains beyond the abiotic slide angle than larger grains. In addition, the cyanobacterial mats actively bound grains of all sizes over time. In contrast, the much larger algal mats trapped medium and coarse grains at all angles. Our experiments suggest that (i) the presence of detrital grains beyond the abiotic slide angle can be considered a biosignature in ancient stromatolites where biogenicity is in question, and, (ii) where coarse grains are present within stromatolite laminae at angles beyond the abiotic angle of slide (e.g., most modern marine stromatolites), typical cyanobacterial‐type mats are probably not solely responsible for the construction, giving insight into the evolution of stromatolite microfabrics through time.     

Molecular biosignatures reveal common benthic microbial sources of organic matter in ooids and grapestones from Pigeon Cay,The Bahamas

Ooids are sedimentary grains that are distributed widely in the geologic record. Their formation is still actively debated, which limits our understanding of the significance and meaning of these grains in Earth's history. Central questions include the role played by microbes in the formation of ooids and the sources of ubiquitous organic matter within ooid cortices. To address these issues, we investigated the microbial community composition and associated lipids in modern oolitic sands at Pigeon Cay on Cat Island, The Bahamas. Surface samples were taken along a transect from the shallow, turbulent surf zone to calmer, deeper water. Grains transitioned from shiny and abraded ooids in the surf zone, to biofilm‐coated ooids at about 3 m water depth. Further offshore, grapestones (cemented aggregates of ooids) dominated. Benthic diatoms and Proteobacteria dominated biofilms. Taxa that may promote carbonate precipitation were abundant, particularly those associated with sulfur cycling. Compared to the lipids associated with surface biofilms, relict lipids bound within carbonate exhibited remarkably similar profiles in all grain types. The enhanced abundance of methyl‐branched fatty acids and β‐hydroxy fatty acids, 1‐O‐monoalkyl glycerol ethers and hopanoids bound within ooid and grapestone carbonate confirms a clear association of benthic sedimentary bacteria with these grains. Lipids bound within ooid cortices also contain molecular indicators of microbial heterotrophic degradation of organic matter, possibly in locally reducing conditions. These included the loss of labile unsaturated fatty acids, enhanced long‐chain fatty acids/short‐chain fatty acids, enriched stable carbon isotopes ratios of fatty acids, and very high stanol/stenol ratios. To what extent some of these molecular signals are derived from later heterotrophic endolithic activity remains to be fully resolved. We speculate that some ooid carbonate forms in microbial biofilms and that early diagenetic degradation of biofilms may also play a role in early stage carbonate precipitation around ooids.     

台湾地区上下第三系界线划分的孢粉学证据

通过对台湾中部南投县国姓地区北港溪剖面的孢粉样品分析,结合已有的台湾北部基隆地区万里－大武仑露头剖面的孢粉资料,认为台湾地区上下第三系界线置于炭寮地层与十四股层（南投）或公馆凝灰岩与木山层（基隆）之间较为合理。其孢粉组合特征,反映出古气候由晚渐新世经含桤木粉－松粉孢粉组合为特征的寒冷潮湿的北亚热带型向早中新世以含榆科、栎属孢粉组合为特征的温暖湿润的南亚热带型过渡趋势。由于南海北部大陆架北坡的珠海组     

Formation of micro‐spherulitic barite in association with organic matter within sulfidized stromatolites of the 3.48 billion‐year‐old Dresser Formation,Pilbara Craton

The shallow marine and subaerial sedimentary and hydrothermal rocks of the ~3.48 billion‐year‐old Dresser Formation are host to some of Earth's oldest stromatolites and microbial remains. This study reports on texturally distinctive, spherulitic barite micro‐mineralization that occur in association with primary, autochthonous organic matter within exceptionally preserved, strongly sulfidized stromatolite samples obtained from drill cores. Spherulitic barite micro‐mineralization within the sulfidized stromatolites generally forms submicron‐scale aggregates that show gradations from hollow to densely crystallized, irregular to partially radiating crystalline interiors. Several barite micro‐spherulites show thin outer shells. Within stromatolites, barite micro‐spherulites are intimately associated with petrographically earliest dolomite and nano‐porous pyrite enriched in organic matter, the latter of which is a possible biosignature assemblage that hosts microbial remains. Barite spherulites are also observed within layered barite in proximity to stromatolite layers, where they are overgrown by compositionally distinct (Sr‐rich), coarsely crystalline barite that may have been sourced from hydrothermal veins at depth. Micro‐spherulitic barite, such as reported here, is not known from hydrothermal systems that exceed the upper temperature limit for life. Rather, barite with near‐identical morphology and micro‐texture is known from zones of high bio‐productivity under low‐temperature conditions in the modern oceans, where microbial activity and/or organic matter of degrading biomass controls the formation of spherulitic aggregates. Hence, the presence of micro‐spherulitic barite in the organic matter‐bearing Dresser Formation sulfidized stromatolites lend further support for a biogenic origin of these unusual, exceptionally well‐preserved, and very ancient microbialites.     

Early Neoproterozoic well-preserved stromatolites from southern Liaoning,North China: characteristics and paleogeographic implications

We report morphology and microstructure of the stromatolites of the Ganjingzi Formation in southern Liaoning. Sedimentologic and morphologic analyses indicate that the lower stromatolite mounds formed in a transgressive succession, while the stromatolite columns in the more complex upper biostrome changed vertically from dispersed growth to dense clumping. Biostratigraphic analysis shows that the stromatolites in the Ganjingzi Formation are similar to those from coeval strata in the Xuzhou-Huainan Region and in southern Jilin. Comparisons of the morphotype genera of stromatolites and the sedimentary setting between different areas, imply that sea-level was fluctuating in the east of the North China Craton (NCC) during the Ganjingzi interval and that the transgressions were beneficial to stromatolite growth, as indicated by the increased number of stromatolites in the study area.     

A likely role for anoxygenic photosynthetic microbes in the formation of ancient stromatolites

Although cyanobacteria are the dominant primary producers in modern stromatolites and other microbialites, the oldest stromatolites pre-date geochemical evidence for oxygenic photosynthesis and cyanobacteria in the rock record. As a step towards the development of laboratory models of stromatolite growth, we tested the potential of a metabolically ancient anoxygenic photosynthetic bacterium to build stromatolites. This organism, Rhodopseudomonas palustris, stimulates the precipitation of calcite in solutions already highly saturated with respect to calcium carbonate, and greatly facilitates the incorporation of carbonate grains into proto-lamina (i.e. crusts). The appreciable stimulation of the growth of proto-lamina by a nonfilamentous anoxygenic microbe suggests that similar microbes may have played a greater role in the formation of Archean stromatolites than previously assumed.     

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas

Living marine stromatolites at Highborne Cay, Bahamas, are formed by microbial mat communities that facilitate precipitation of calcium carbonate and bind and trap small carbonate sand grains. This process results in a laminated structure similar to the layering observed in ancient stromatolites. In the modern marine system at Highborne Cay, lamination, lithification and stromatolite formation are associated with cycling between three types of microbial communities at the stromatolite surface (Types 1, 2 and 3, which range from a leathery microbial mat to microbially fused sediment). Examination of 923 universal small-subunit rRNA gene sequences from these communities reveals that taxonomic richness increases during transition from Type 1 to Type 3 communities, supporting a previous model that proposed that the three communities represent different stages of mat development. The phylogenetic composition also changes significantly between these community types and these community changes occur in concert with variation in biogeochemical rates. The dominant bacterial groups detected in the stromatolites include Alphaproteobacteria , Planctomycetes , Cyanobacteria and Bacteroidetes . In addition, the stromatolite communities were found to contain novel cyanobacteria that may be uniquely associated with modern marine stromatolites. The implications of these findings are discussed in the context of current models for stromatolite formation.     

Microbially influenced formation of Neoarchean ooids

Ooids are accretionary grains commonly reported from turbulent, shallow‐water environments. They have long been associated with microbially dominated ecosystems and often occur in close proximity to, or embedded within, stromatolites, yet have historically been thought to form solely through physicochemical processes. Numerous studies have revealed both constructive and destructive roles for microbes colonizing the surfaces of modern calcitic and aragonitic ooids, but there has been little evidence for the operation of these processes during the Archean and Proterozoic, when both ooids and microbially dominated ecosystems were more widespread. Recently described carbonate ooids from the 2.9 Ga Pongola Supergroup, South Africa, include well‐preserved examples composed of diagenetic dolomite interpreted to have formed from a high‐Mg‐calcite precursor. Spatial distributions of organic matter and elements associated with metabolic activity (N, S, and P) were interpreted as evidence for a biologically induced origin. Here, we describe exceptionally well‐preserved ooids composed of calcite, collected from Earth's oldest known carbonate lake system, the ~2.72 Ga Meentheena Member (Tumbiana Formation), Fortescue Group, Western Australia. We used optical microscopy, Raman spectroscopy, XRD, SEM‐EDS, LA‐ICP‐MS, EA‐IRMS, and a novel micro‐XRF instrument to investigate an oolite shoal deposited between stromatolites that preserve abundant evidence for microbial activity. We report an extremely fine, radial‐concentric, calcitic microfabric that is similar to the primary and early diagenetic fabrics of calcitic ooids reported from modern temperate lakes. Early diagenetic silica has trapped isotopically light and thermally mature organic matter. The close association of organic matter with mineral phases and microfabrics related to primary and early diagenetic processes suggest incorporation of organic matter occurred during accretion, likely due to the presence of microbial biofilms. We conclude that the oldest known calcitic ooids were likely formed through processes similar to those that mediate the accretion of ooids in similar environments today, including formation within a microbial biosphere.     

Magnesian calcite and chamositic ooids forming shoals peripheral to Late Ordovician (Ashgill) muddy siliciclastic shores: southern Ontario

In southern Ontario, ooids are associated with two distinct facies associations in the Queenston Formation, the final stage of Late Ordovician (Ashgill) Taconic basin fill. One facies consists of thin ooid and bioclastic grainstones interbedded with mudrock, and lies near the base of the formation, and, in southwestern Ontario, also forms a local NW-thickening wedge near the middle of the formation. Ooids have radial-fibrous and radial-concentric fabrics (Type A), with chamosite, illite, and Fe-oxide laths at intercrystalline sites. Vertical lithologic and ooid abundance patterns indicate that thresholds to carbonate production were sensitive to changes in terrigenous sediment supply, sea level, circulation, accommodation space, and tectonism.

Ooids in the second facies association are admixed with abraded fragments of open-marine biota, or occur burrow fills, within a <30-cm-thick interval of mudrock near the top of the preserved Queenston succession, a few metres below the Ordovician–Silurian unconformity. Ooids have radial concentric and crosscutting patchy microcrystalline fabrics (Type B). This unit may represent a transgressive or stillstand deposit modified by bioturbation.

The extent of preserved fabric suggests that both ooid types were originally magnesian calcite, but Type A ooids underwent greater burial alteration. This is shown by crystalline mosaics that cross-cut relict primary fabrics; δ¹³C values (−1.82‰ to +0.67‰) and δ¹⁸O values (−4.46‰ to −10.57‰) more negative than marine calcite of similar age; Mn and Fe concentrations more elevated above expected marine values; and a luminescence similar to that of intergranular cements. Burial meteoric diagenesis was likely promoted by excellent permeability of the host sand. We interpret authigenic chamosite and Fe-oxide to reflect diagenesis of iron-bearing and clay detritus trapped during ooid growth. Type B ooids suffered less alteration: δ¹³C (+1.1‰ to +6.64‰) and δ¹⁸O (−3.04‰ to −4.81‰) values overlap the expected marine range, including ¹³C enrichment that occurs within the Hirnantian (latest Ordovician) excursion. Although Mn and Fe values are still higher than those of modern calcitic ooids, negligible luminescence suggests that recrystallization occurred in the presence of marine-derived pore fluids. Further burial alteration was inhibited due to low permeability of the host mud.

Type A ooid facies in the Queenston Formation forms an ancient analogue for lesser known Quaternary ooid shoals peripheral to tropical deltaic systems. The facies of Type B ooids, while more enigmatic, may preserve a geochemical herald of latest Ordovician climate change. The presence of minor chamosite in Type A ooids defines a possible distal facies of the well-known oolitic ironstones of similar age in the mid-continental USA.     

Biotic and Abiotic Imprints on Mg-Rich Stromatolites: Lessons from Lake Salda,SW Turkey

Abstract

Modern hydrated Mg rich stromatolites are actively growing along the shallow shorelines of Lake Salda (SW Turkey). An integrated approach involving isotopic, mineralogical, microscopic, and organic/geochemical techniques along with culture-independent molecular methods were applied to various lake samples to assess the role of microbial processes on stromatolite formation. This study further explores the biosignature preservation potential of fossil stromatolites by comparing with textures, lipid profiles and isotopic composition of the modern stromatolites. Similar lipid profile and δ¹³C isotope values in active and fossil stromatolites argue that CO₂ cycling delicately balanced between photosynthetic and heterotrophic (aerobic) activity as in the active ones may have regulated stromatolite formation in the lake. A decrease in the exopolymeric substances (EPS) profile of the mat and concurrent hydromagnesite precipitation imply a critical role for EPS in the formation of stromatolite. Consistently, a discrete, discontinuous lamination and clotted micropeloidal textures with cyanobacterial remnants in the fossil stromatolites likely refer to partial degradation of EPS, creating local nucleation sites and allowing precipitation of hydrated Mg minerals and provide a link to the active microbial mat in the modern stromatolites. Our results for the first time provide strong evidence for close coupling of cyanobacterial photosynthesis and aerobic heterotrophic respiration on hydromagnesite textures involved in the stromatolite formation of Lake Salda. The creation of photosynthesis induced high-pH conditions combined with a change in the amount and properties of the EPS and the repetition of these processes over time seems to be a possible pathway for stromatolite growth in the lake. Understanding these microbial symbioses and their mineralized records may provide new insights on the formation mechanism of Mg-rich carbonates not only for terrestrial geological records but also for planetary bodies like Mars, where hydrated Mg-carbonate deposits have been identified in possible paleolake deposits at Jezero crater, the landing site of the NASA Mars 2020 rover.     

Analysis of growth directions of columnar stromatolites from Walker Lake, western Nevada

Samples of digitate, branching, columnar stromatolites were collected from the steep sides and near horizontal top of four in situ boulders located on the southwestern side of Walker Lake, Nevada, to test the widely held assumption that stromatolite column formation represents a phototropic response. We would predict that the columns on the steeply dipping sides of the boulder would bend upwards toward the light during growth if phototropism was significant during stromatolite morphogenesis. Angle of growth measurements on >300 stromatolites demonstrate that the stromatolites grew nearly normal to their growth surface, regardless of the inclination of their growth surface. No significant differences in the distribution of growth angles between north-, south-, east-, or west-facing samples were observed, and stromatolite lamina thickness did not systematically vary with position on the boulder. The lack of a strong phototropic response does not rule out a biological origin for the Walker Lake structures, but it does suggest that phototropic growth was not a dominant factor controlling stromatolite morphogenesis in these stromatolites and that column formation cannot be uniquely attributed as a phototropic response in stromatolites. It is interesting to note that the morphology of the stromatolites on the top of the boulder is identical to stromatolites on the steep sides. Stromatolite morphogenetic models that predict branching typically require a vertically directed sedimentary component, a feature that would have likely affected the stromatolites on the tops of the boulders, but not the sides, suggesting that other factors may be important in stromatolite morphogenesis.     

Stromatolite-dominated microbialites at the Permian–Triassic boundary of the Xikou section on South Qinling Block,China

Permian–Triassic boundary microbialites (PTBMs) are organosedimentary carbonates formed immediately after the end-Permian mass extinction. All those reported PTBMs constrained by convincing conodont biozones are present stratigraphycally not higher than the Hindeodus parvus zone and most of them are dominated by thrombolites. This paper provides the first record of a brief, but spectacular development of stromatolite-dominated PTBMs within the basal Isarcicella isarcica conodont zone of the earliest Triassic from the Xikou section of South Qinling Block that was at the margin of the North China Block during the Permian–Triassic transition and was geographically separated from the major occurrence of post-extinction microbialites in the South China Block. This stromatolite cap overlies a 3.7-m-thick oolitic limestone and is composed of a lower 0.2-m-thick bed and an upper 0.5-m-thick bed, separated by a 0.2-m-thick greyish green siliciclastic mudstone. These two stromatolite beds mainly consist of columnar stromatolites with subordinate domal stromatolites. The intercolumn and interstitial spaces within the stromatolites are filled with oolitic grainstones. At the microscopic scale, laminoid structures in stromatolites comprise wavy, millimetric-domical and tangled laminae. The increased grain and fossil contents and/or bioturbation in the domical and tangled laminae indicate that the formation of these laminae is likely related to an increase in the populations and the disruptions by benthic metazoans, as well as an influx of sediment grains. The δ¹³C_carb values fluctuate between 2‰ and 3‰ in the uppermost Permian strata; a distinct negative shift of 1.9‰ occurs at the topmost oolitic grainstone, just below the lower stromatolite bed, and the lowest value of −0.1‰ is located at the base of the upper stromatolite bed. The stratigraphic succession from stromatolites to thrombolites of the PTBMs may represent a transgressive succession and/or a transient ecosystem recovery immediately after the end-Permian mass extinction. The thrombolites-dominated PTBMs mainly developed in near-equator shallow marine geographic locations, and stromatolite-dominated PTBMs mainly developed at higher latitude settings, which probably indicates that a relatively lower diversity and abundance of marine benthic metazoans existed at higher latitudes after the end-Permian mass extinction.     

Carbonate ooids of the Mesoarchaean Pongola Supergroup,South Africa

Ooids from the Mesoarchaean Chobeni Formation, Pongola Supergroup, KwaZulu‐Natal, South Africa are older than any ooids reported to date. They are made of dolomite and ankerite and show concentric, radial‐concentric, micritic, and radial fabrics. Radial ooids are interpreted to have originated from high‐Mg‐calcite and probably formed by microbial activity in a low‐energy regime, while concentric ooids had an aragonite precursor and formed biotically under agitated/high‐energy environmental conditions. Micritic ooids formed via the recrystallization of concentric ooids. Ooids and other allochems, such as intraclasts and peloids, contain carbonaceous matter. The close association of carbonaceous matter within ooid cortices with metabolically important elements, such as N, S and P, as identified by nano‐scale secondary ion mass spectrometry analysis, allows us to propose a biologically induced origin for some ooids. By analogy with modern examples, a variety of microbial communities probably played a role in carbonate precipitation and ooid formation. Shale‐normalized rare earth element (REE) distribution patterns of ooids and other allochems show positive La_SN, Gd_SN and Y_SN anomalies, superchondritic Y/Ho ratios and depleted light rare earth elements (LREEs) relative to the heavy rare earth elements (HREEs), which resemble those of seawater. These anomalies are less pronounced than expected for an open marine setting, which is interpreted as evidence for deposition in restricted shallow marine environments. Non‐seawater REE patterns in recrystallized matrix and pore‐ and vein‐filling carbonate likely reflect redistribution of rare earth elements during post‐depositional alteration and/or reflect differences in the elemental and REE compositions of diagenetic fluids.     

Composition and Structure of Microbial Communities from Stromatolites of Hamelin Pool in Shark Bay, Western Australia

Stromatolites, organosedimentary structures formed by microbial activity, are found throughout the geological record and are important markers of biological history. More conspicuous in the past, stromatolites occur today in a few shallow marine environments, including Hamelin Pool in Shark Bay, Western Australia. Hamelin Pool stromatolites often have been considered contemporary analogs to ancient stromatolites, yet little is known about the microbial communities that build them. We used DNA-based molecular phylogenetic methods that do not require cultivation to study the microbial diversity of an irregular stromatolite and of the surface and interior of a domal stromatolite. To identify the constituents of the stromatolite communities, small subunit rRNA genes were amplified by PCR from community genomic DNA with universal primers, cloned, sequenced, and compared to known rRNA genes. The communities were highly diverse and novel. The average sequence identity of Hamelin Pool sequences compared to the >200,000 known rRNA sequences was only ~92%. Clone libraries were ~90% bacterial and ~10% archaeal, and eucaryotic rRNA genes were not detected in the libraries. The most abundant sequences were representative of novel proteobacteria (~28%), planctomycetes (~17%), and actinobacteria (~14%). Sequences representative of cyanobacteria, long considered to dominate these communities, comprised <5% of clones. Approximately 10% of the sequences were most closely related to those of α-proteobacterial anoxygenic phototrophs. These results provide a framework for understanding the kinds of organisms that build contemporary stromatolites, their ecology, and their relevance to stromatolites preserved in the geological record.     

Microaerophilic Fe‐oxidizing micro‐organisms in Middle Jurassic ferruginous stromatolites and the paleoenvironmental context of their formation (Southern Carpathians,Romania)

Ferruginous stromatolites occur associated with Middle Jurassic condensed deposits in several Tethyan and peri‐Tethyan areas. The studied ferruginous stromatolites occurring in the Middle Jurassic condensed deposits of Southern Carpathians (Romania) preserve morphological, geochemical, and mineralogical data that suggest microbial iron oxidation. Based on their macrofabrics and accretion patterns, we classified stromatolites: (1) Ferruginous microstromatolites associated with hardground surfaces and forming the cortex of the macro‐oncoids and (2) Domical ferruginous stromatolites developed within the Ammonitico Rosso‐type succession disposed above the ferruginous microstromatolites (type 1). Petrographic and scanning electron microscope (SEM) examinations reveal that different types of filamentous micro‐organisms were the significant framework builders of the ferruginous stromatolitic laminae. The studied stromatolites yield a large range of δ⁵⁶Fe values, from ?0.75‰ to +0.66‰ with predominantly positive values indicating the prevalence of partial ferrous iron oxidation. The lowest negative δ⁵⁶Fe values (up to ?0.75‰) are present only in domical ferruginous stromatolites samples and point to initial iron mobilization where the Fe(II) was produced by dissimilatory Fe(III) reduction of ferric oxides by Fe(III)‐reducing bacteria. Rare‐earth elements and yttrium (REE + Y) are used to decipher the nature of the seawater during the formation of the ferruginous stromatolites. Cerium anomalies display moderate to small negative values for the ferruginous microstromatolites, indicating weakly oxygenated conditions compatible with slowly reducing environments, in contrast to the domical ferruginous stromatolites that show moderate positive Ce anomalies suggesting that they formed in deeper, anoxic–suboxic waters. The positive Eu anomalies from the studied samples suggest a diffuse hydrothermal input on the seawater during the Middle Jurassic on the sites of ferruginous stromatolite accretion. This study presents the first interpretation of REE + Y in the Middle Jurassic ferruginous stromatolites of Southern Carpathians, Romania.