Giant Hydrogen Sulfide Plume in the Oxygen Minimum Zone off Peru Supports Chemolithoautotrophy

In Eastern Boundary Upwelling Systems nutrient-rich waters are transported to the ocean surface, fuelling high photoautotrophic primary production. Subsequent heterotrophic decomposition of the produced biomass increases the oxygen-depletion at intermediate water depths, which can result in the formation of oxygen minimum zones (OMZ). OMZs can sporadically accumulate hydrogen sulfide (H₂S), which is toxic to most multicellular organisms and has been implicated in massive fish kills. During a cruise to the OMZ off Peru in January 2009 we found a sulfidic plume in continental shelf waters, covering an area >5500 km², which contained ∼2.2×10⁴ tons of H₂S. This was the first time that H₂S was measured in the Peruvian OMZ and with ∼440 km³ the largest plume ever reported for oceanic waters. We assessed the phylogenetic and functional diversity of the inhabiting microbial community by high-throughput sequencing of DNA and RNA, while its metabolic activity was determined with rate measurements of carbon fixation and nitrogen transformation processes. The waters were dominated by several distinct γ-, δ- and ε-proteobacterial taxa associated with either sulfur oxidation or sulfate reduction. Our results suggest that these chemolithoautotrophic bacteria utilized several oxidants (oxygen, nitrate, nitrite, nitric oxide and nitrous oxide) to detoxify the sulfidic waters well below the oxic surface. The chemolithoautotrophic activity at our sampling site led to high rates of dark carbon fixation. Assuming that these chemolithoautotrophic rates were maintained throughout the sulfidic waters, they could be representing as much as ∼30% of the photoautotrophic carbon fixation.Postulated changes such as eutrophication and global warming, which lead to an expansion and intensification of OMZs, might also increase the frequency of sulfidic waters. We suggest that the chemolithoautotrophically fixed carbon may be involved in a negative feedback loop that could fuel further sulfate reduction and potentially stabilize the sulfidic OMZ waters.     

Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone

Ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing (anammox) bacteria have emerged as significant factors in the marine nitrogen cycle and are responsible for the oxidation of ammonium to nitrite and dinitrogen gas, respectively. Potential for an interaction between these groups exists; however, their distributions are rarely determined in tandem. Here we have examined the vertical distribution of AOA and anammox bacteria through the Arabian Sea oxygen minimum zone (OMZ), one of the most intense and vertically exaggerated OMZs in the global ocean, using a unique combination of intact polar lipid (IPL) and gene-based analyses, at both DNA and RNA levels. To screen for AOA-specific IPLs, we developed a high-performance liquid chromatography/mass spectrometry/mass spectrometry method targeting hexose-phosphohexose (HPH) crenarchaeol, a common IPL of cultivated AOA. HPH-crenarchaeol showed highest abundances in the upper OMZ transition zone at oxygen concentrations of ca. 5 μ, coincident with peaks in both thaumarchaeotal 16S rDNA and amoA gene abundances and gene expression. In contrast, concentrations of anammox-specific IPLs peaked within the core of the OMZ at 600 m, where oxygen reached the lowest concentrations, and coincided with peak anammox 16S rDNA and the hydrazine oxidoreductase (hzo) gene abundances and their expression. Taken together, the data reveal a unique depth distribution of abundant AOA and anammox bacteria and the segregation of their respective niches by >400 m, suggesting no direct coupling of their metabolisms at the time and site of sampling in the Arabian Sea OMZ.     

Accumulation of Polyunsaturated Aldehydes in the Gonads of the Copepod Acartia tonsa Revealed by Tailored Fluorescent Probes

Polyunsaturated aldehydes (PUAs) are released by several diatom species during predation. Besides other attributed activities, these oxylipins can interfere with the reproduction of copepods, important predators of diatoms. While intensive research has been carried out to document the effects of PUAs on copepod reproduction, little is known about the underlying mechanistic aspects of PUA action. Especially PUA uptake and accumulation in copepods has not been addressed to date. To investigate how PUAs are taken up and interfere with the reproduction in copepods we developed a fluorescent probe containing the α,β,γ,δ-unsaturated aldehyde structure element that is essential for the activity of PUAs as well as a set of control probes. We developed incubation and monitoring procedures for adult females of the calanoid copepod Acartia tonsa and show that the PUA derived fluorescent molecular probe selectively accumulates in the gonads of this copepod. In contrast, a saturated aldehyde derived probe of an inactive parent molecule was enriched in the lipid sac. This leads to a model for PUAs'' teratogenic mode of action involving accumulation and covalent interaction with nucleophilic moieties in the copepod reproductive tissue. The teratogenic effect of PUAs can therefore be explained by a selective targeting of the molecules into the reproductive tissue of the herbivores, while more lipophilic but otherwise strongly related structures end up in lipid bodies.     

Aphotic N2 Fixation in the Eastern Tropical South Pacific Ocean

We examined rates of N₂ fixation from the surface to 2000 m depth in the Eastern Tropical South Pacific (ETSP) during El Niño (2010) and La Niña (2011). Replicated vertical profiles performed under oxygen-free conditions show that N₂ fixation takes place both in euphotic and aphotic waters, with rates reaching 155 to 509 µmol N m⁻² d⁻¹ in 2010 and 24±14 to 118±87 µmol N m⁻² d⁻¹ in 2011. In the aphotic layers, volumetric N₂ fixation rates were relatively low (<1.00 nmol N L⁻¹ d⁻¹), but when integrated over the whole aphotic layer, they accounted for 87–90% of total rates (euphotic+aphotic) for the two cruises. Phylogenetic studies performed in microcosms experiments confirm the presence of diazotrophs in the deep waters of the Oxygen Minimum Zone (OMZ), which were comprised of non-cyanobacterial diazotrophs affiliated with nifH clusters 1K (predominantly comprised of α-proteobacteria), 1G (predominantly comprised of γ-proteobacteria), and 3 (sulfate reducing genera of the δ-proteobacteria and Clostridium spp., Vibrio spp.). Organic and inorganic nutrient addition bioassays revealed that amino acids significantly stimulated N₂ fixation in the core of the OMZ at all stations tested and as did simple carbohydrates at stations located nearest the coast of Peru/Chile. The episodic supply of these substrates from upper layers are hypothesized to explain the observed variability of N₂ fixation in the ETSP.     

Paleoceanographic Insights on Recent Oxygen Minimum Zone Expansion: Lessons for Modern Oceanography

Climate-driven Oxygen Minimum Zone (OMZ) expansions in the geologic record provide an opportunity to characterize the spatial and temporal scales of OMZ change. Here we investigate OMZ expansion through the global-scale warming event of the most recent deglaciation (18-11 ka), an event with clear relevance to understanding modern anthropogenic climate change. Deglacial marine sediment records were compiled to quantify the vertical extent, intensity, surface area and volume impingements of hypoxic waters upon continental margins. By integrating sediment records (183-2,309 meters below sea level; mbsl) containing one or more geochemical, sedimentary or microfossil oxygenation proxies integrated with analyses of eustatic sea level rise, we reconstruct the timing, depth and intensity of seafloor hypoxia. The maximum vertical OMZ extent during the deglaciation was variable by region: Subarctic Pacific (~600-2,900 mbsl), California Current (~330-1,500 mbsl), Mexico Margin (~330-830 mbsl), and the Humboldt Current and Equatorial Pacific (~110-3,100 mbsl). The timing of OMZ expansion is regionally coherent but not globally synchronous. Subarctic Pacific and California Current continental margins exhibit tight correlation to the oscillations of Northern Hemisphere deglacial events (Termination IA, Bølling-Allerød, Younger Dryas and Termination IB). Southern regions (Mexico Margin and the Equatorial Pacific and Humboldt Current) exhibit hypoxia expansion prior to Termination IA (~14.7 ka), and no regional oxygenation oscillations. Our analyses provide new evidence for the geographically and vertically extensive expansion of OMZs, and the extreme compression of upper-ocean oxygenated ecosystems during the geologically recent deglaciation.     

Temperature Affects the Use of Storage Fatty Acids as Energy Source in a Benthic Copepod (Platychelipus littoralis,Harpacticoida)

The utilization of storage lipids and their associated fatty acids (FA) is an important means for organisms to cope with periods of food shortage, however, little is known about the dynamics and FA mobilization in benthic copepods (order Harpacticoida). Furthermore, lipid depletion and FA mobilization may depend on the ambient temperature. Therefore, we subjected the temperate copepod Platychelipus littoralis to several intervals (3, 6 and 14 days) of food deprivation, under two temperatures in the range of the normal habitat temperature (4, 15°C) and under an elevated temperature (24°C), and studied the changes in FA composition of storage and membrane lipids. Although bulk depletion of storage FA occurred after a few days of food deprivation under 4°C and 15°C, copepod survival remained high during the experiment, suggesting the catabolization of other energy sources. Ambient temperature affected both the degree of FA depletion and the FA mobilization. In particular, storage FA were more exhausted and FA mobilization was more selective under 15°C compared with 4°C. In contrast, depletion of storage FA was limited under an elevated temperature, potentially due to a switch to partial anaerobiosis. Food deprivation induced selective DHA retention in the copepod’s membrane, under all temperatures. However, prolonged exposure to heat and nutritional stress eventually depleted DHA in the membranes, and potentially induced high copepod mortality. Storage lipids clearly played an important role in the short-term response of the copepod P. littoralis to food deprivation. However, under elevated temperature, the use of storage FA as an energy source is compromised.     

Myofibril Changes in the Copepod Pseudodiaptomus marinus Exposed to Haline and Thermal Stresses

Copepods are small crustaceans capable to survive in various aquatic environments. Their responses to changes in different external factors such as salinity and temperature can be observed at different integration levels from copepod genes to copepod communities. Until now, no thorough observation of the temperature or salinity effect stresses on copepods has been done by optical microscopy. In this study, we used autofluorescence to visualize these effects on the morphology of the calanoid copepod Pseudodiaptomus marinus maintained during several generations in the laboratory at favorable and stable conditions of salinity (30 psu) and temperature (18°C). Four different stress experiments were conducted: at a sharp decrease in temperature (18 to 4°C), a moderate decrease in salinity (from 30 to 15 psu), a major decrease in salinity (from 30 to 0 psu), and finally a combined stress with a decrease in both temperature and salinity (from 18°C and 30 psu to 4°C and 0 psu). After these stresses, images acquired by confocal laser scanning microscopy (CLSM) revealed changes in copepod cuticle and muscle structure. Low salinity and/or temperature stresses affected both the detection of fluorescence emitted by muscle sarcomeres and the distance between them. In the remaining paper we will use the term sarcomeres to describe the elements located within sarcomeres and emitted autofluorescence signals. Quantitative study showed an increase in the average distance between two consecutive sarcomeres from 2.06 +/- 0.11 μm to 2.44 +/- 0.42 μm and 2.88 +/- 0.45μm after the exposure to major haline stress (18°C, 0 psu) and the combined stress (4°C, 0 psu), respectively. These stresses also caused cuticle cracks which often occurred at the same location, suggesting the cuticle as a sensitive area for osmoregulation. Our results suggest the use of cuticular and muscle autofluorescence as new biomarkers of stress detectable in formalin-preserved P. marinus individuals. Our label-free method can be easily applied to a large number of other copepod species or invertebrates with striated musculature.     

Nitrogen Fuelling of the Pelagic Food Web of the Tropical Atlantic

We estimated the relative contribution of atmosphere (ic Nitrogen (N) input (wet and dry deposition and N fixation) to the epipelagic food web by measuring N isotopes of different functional groups of epipelagic zooplankton along 23°W (17°N-4°S) and 18°N (20-24°W) in the Eastern Tropical Atlantic. Results were related to water column observations of nutrient distribution and vertical diffusive flux as well as colony abundance of Trichodesmium obtained with an Underwater Vision Profiler (UVP5). The thickness and depth of the nitracline and phosphocline proved to be significant predictors of zooplankton stable N isotope values. Atmospheric N input was highest (61% of total N) in the strongly stratified and oligotrophic region between 3 and 7°N, which featured very high depth-integrated Trichodesmium abundance (up to 9.4×10⁴ colonies m^-2), strong thermohaline stratification and low zooplankton δ¹⁵N (~2‰). Relative atmospheric N input was lowest south of the equatorial upwelling between 3 and 5°S (27%). Values in the Guinea Dome region and north of Cape Verde ranged between 45 and 50%, respectively. The microstructure-derived estimate of the vertical diffusive N flux in the equatorial region was about one order of magnitude higher than in any other area (approximately 8 mmol m^-2 d ¹). At the same time, this region received considerable atmospheric N input (35% of total). In general, zooplankton δ¹⁵N and Trichodesmium abundance were closely correlated, indicating that N fixation is the major source of atmospheric N input. Although Trichodesmium is not the only N fixing organism, its abundance can be used with high confidence to estimate the relative atmospheric N input in the tropical Atlantic (r² = 0.95). Estimates of absolute N fixation rates are two- to tenfold higher than incubation-derived rates reported for the same regions. Our approach integrates over large spatial and temporal scales and also quantifies fixed N released as dissolved inorganic and organic N. In a global analysis, it may thus help to close the gap in oceanic N budgets.     

Maternal Effects May Act as an Adaptation Mechanism for Copepods Facing pH and Temperature Changes

Acidification of the seas, caused by increased dissolution of CO₂ into surface water, and global warming challenge the adaptation mechanisms of marine organisms. In boreal coastal environments, temperature and pH vary greatly seasonally, but sometimes also rapidly within hours due to upwelling events. We studied if copepod zooplankton living in a fluctuating environment are tolerant to climate change effects predicted for 2100, i.e., a temperature increase of 3°C and a pH decrease of 0.4. Egg production of the copepod Acartia sp. was followed over five consecutive days at four temperature and pH conditions (17°C/ambient pH; 17°C/low pH; 20°C/ambient pH; 20°C/low pH). Egg production was higher in treatments with warmer temperature but the increase was smaller when copepods were simultaneously exposed to warmer temperature and lowered pH. To reveal if maternal effects are important in terms of adaptation to a changing environment, we conducted an egg transplantation experiment, where the produced eggs were moved to a different environment and egg hatching was monitored for three days. When pH changed between the egg production and hatching conditions, it resulted in lower hatching success, but the effect was diminished over the course of the experiment possibly due to improved maternal provisioning. Warmer egg production temperature induced a positive maternal effect and increased the egg hatching rate. Warmer hatching temperature resulted also in earlier hatching. However, the temperature effects appear to be dependent on the ambient sea temperature. Our preliminary results indicate that maternal effects are an important mechanism in the face of environmental change.     

Predation on the Invasive Copepod,Pseudodiaptomus forbesi,and Native Zooplankton in the Lower Columbia River: An Experimental Approach to Quantify Differences in Prey-Specific Feeding Rates

Invasive planktonic crustaceans have become a prominent feature of aquatic communities worldwide, yet their effects on food webs are not well known. The Asian calanoid copepod, Pseudodiaptomus forbesi, introduced to the Columbia River Estuary approximately 15 years ago, now dominates the late-summer zooplankton community, but its use by native aquatic predators is unknown. We investigated whether three species of planktivorous fishes (chinook salmon, three-spined stickleback, and northern pikeminnow) and one species of mysid exhibited higher feeding rates on native copepods and cladocerans relative to P. forbesi by conducting `single-prey’ feeding experiments and, additionally, examined selectivity for prey types with `two-prey’ feeding experiments. In single-prey experiments individual predator species showed no difference in feeding rates on native cyclopoid copepods (Cyclopidae spp.) relative to invasive P. forbesi, though wild-collected predators exhibited higher feeding rates on cyclopoids when considered in aggregate. In two-prey experiments, chinook salmon and northern pikeminnow both strongly selected native cladocerans (Daphnia retrocurva) over P. forbesi, and moreover, northern pikeminnow selected native Cyclopidae spp. over P. forbesi. On the other hand, in two-prey experiments, chinook salmon, three-spined stickleback and mysids were non- selective with respect to feeding on native cyclopoid copepods versus P. forbesi. Our results indicate that all four native predators in the Columbia River Estuary can consume the invasive copepod, P. forbesi, but that some predators select for native zooplankton over P. forbesi, most likely due to one (or both) of two possible underlying casual mechanisms: 1) differential taxon-specific prey motility and escape responses (calanoids > cyclopoids > daphnids) or 2) the invasive status of the zooplankton prey resulting in naivety, and thus lower feeding rates, of native predators feeding on invasive prey.     

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

Marine oxygen minimum zones (OMZs) support diverse microbial communities with roles in major elemental cycles. It is unclear how the taxonomic composition and metabolism of OMZ microorganisms vary between particle-associated and free-living size fractions. We used amplicon (16S rRNA gene) and shotgun metagenome sequencing to compare microbial communities from large (>1.6 μm) and small (0.2–1.6 μm) filter size fractions along a depth gradient in the OMZ off Chile. Despite steep vertical redox gradients, size fraction was a significantly stronger predictor of community composition compared to depth. Phylogenetic diversity showed contrasting patterns, decreasing towards the anoxic OMZ core in the small size fraction, but exhibiting maximal values at these depths within the larger size fraction. Fraction-specific distributions were evident for key OMZ taxa, including anammox planctomycetes, whose coding sequences were enriched up to threefold in the 0.2–1.6 μm community. Functional gene composition also differed between fractions, with the >1.6 μm community significantly enriched in genes mediating social interactions, including motility, adhesion, cell-to-cell transfer, antibiotic resistance and mobile element activity. Prokaryotic transposase genes were three to six fold more abundant in this fraction, comprising up to 2% of protein-coding sequences, suggesting that particle surfaces may act as hotbeds for transposition-based genome changes in marine microbes. Genes for nitric and nitrous oxide reduction were also more abundant (three to seven fold) in the larger size fraction, suggesting microniche partitioning of key denitrification steps. These results highlight an important role for surface attachment in shaping community metabolic potential and genome content in OMZ microorganisms.     

Planktonic copepods of Boston Harbor,Massachusetts Bay and Cape Cod Bay, 1992

Zooplankton were collected by vertical tows with 102 µm mesh at ten stations in Boston Harbor, Massachusetts Bay and Cape Cod Bay in February, March, April, June, August, and October, 1992. This study was part of a larger monitoring program to assess the effects of a major sewage abatement project, and sampling periods were designed around periods of major phytoplankton events such as the winter-spring diatom bloom, the stratified summer flagellate period, and the autumn transition from stratified to mixed waters. There was considerable seasonal variation in total zooplankton abundance, with minimal values in April (1929–11631 animals m^–3) during a massive bloom of Phaeocystis pouchetii, and maximum values (67 316–261075 animals m^–3) in August. There were no consistent trends of total abundance where any particular station had greater or lesser abundance than others over the entire year. Zooplankton abundance was dominated by copepods (adults + copepodites) and copepod nauplii (30.4–100.0% of total zooplankton, mean= 83.2%). Despite the large seasonal variation in zooplankton and copepod abundance, the copepod assemblage was dominated throughout the entire year by the small copepod Oithona similis, followed by Paracalanus parvus. Other less-abundant copepods present year-round were Pseudocalanus newmani, Temora longicornis, Centropages hamatus, C. typicus, and Calanus finmarchicus. Two species of Acartia were present, primarily in low-salinity waters of Boston Harbor: A. hudsonica during cold periods, and A. tonsa in warm ones. Eurytemora herdmani was also a subdominant in Boston Harbor in October. The potential role of zooplankton grazing in phytoplankton dynamics and bloom cycles in these waters must be considered in view of the overwhelming numerical dominance of the zooplankton by Oithona similis which may feed primarily as a carnivore. Furthermore, it seems unlikely that eutrophication-induced alteration of phytoplankton assemblages could cause significant trophic domino effects, reducing abundances of Calanus finmarchicus that are forage of endangered right whales seasonally utilizing Cape Cod Bay because C. finmarchicus has long been known to be a relatively unselective grazer, and most importantly, it is a trivial component of total zooplankton or total copepod abundance in these waters.     

Zooplankton, especially calanoid copepods, in the upper 1000 m of the south-east Arabian Sea

Abstract. Vertical distribution of zooplankton in the upper1000 m was studied from the south-east Arabian Sea in orderto determine the variations in zooplankton at different depths.The distribution and migration patterns of calanoid copepodspecies were given special attention. The mean zooplankton standingstock in the upper 1000 m was 2.1 g dry Wt m^–2, of which97.7% was concentrated in the upper 400 m. Herbivores were generallymore abundant at all depths, but did not predominate. An increasein zooplankton at night occurred in the upper 200 m, as wellas at the 600–1000 m stratum. The maximum diversity ofcalanoid copepods also coincided with these two depths. Basedon vertical ranges, the calanoid copepod species were assignedto three groups: (i) species occurring predominantly in theepipelagic layer and forming the bulk of the calanoids; (ii)relatively sparser deeper living species confined below 200m; and (iii) species occurring throughout the water column.Some amount of vertical niche separation among congeneric specieswas indicated. While some species showed active migration, agood number of species were non- migratory.     

Effects of a storm event on the structure of the pelagic food web with special emphasis on planktonic ciliates

Storm-induced changes in the water column structure and thepelagic food web were investigated by daily sampling duringa 3 week period (October 24 to November 10, 1988) at a permanentstation in the southern Kattegat (Denmark) Subsequent to a stormthe primary production increased and the size-distribution ofthe phytoplankton changed towards larger cells. Some componentsof the zooplankton community responded to the increase in potentialfood, either in terms of a functional response (copepods) orin terms of a numerical response (cladocera), whereas no changesin the populations of mixo- and heterotrophic aliates were evident.The dilates were not food limited since growth rates determinedin situ were comparable to maximum growth rates measured inthe laboratory. Calculations suggest that the total clearancecapacity of planktonic copepods (as fraction of water columncleared per unit time) was of the same magnitude as the measuredinstantaneous growth rates of the ciliates (0.55–0 85day^–1). Ciliate populations were therefore probably limitedby copepod predation. Ciliates, however, contributed only insignificantlyto the diets of copepods. Although the total zooplankton productionincreased by at least 30% subsequent to the storm (and thatof the copepods by 50%), the zooplankton community was unableto assimilate the entire increase in primary production. Therelative zooplankton (copepods, cladoceran and ciliates) grazingrate on the primary production decreased 30%, and the flow ofcarbon to biomass accumulation, other grazers and in particularsedimentation is predicted to have increased by 100% followingthe storm.     

Spatial Variability in Biodegradation Rates as Evidenced by Methane Production from an Aquifer

Accurate predictions of carbon and energy cycling rates in the environment depend on sampling frequencies and on the spatial variability associated with biological activities. We examined the variability associated with anaerobic biodegradation rates at two sites in an alluvial sand aquifer polluted by municipal landfill leachate. In situ rates of methane production were measured for almost a year, using anaerobic wells installed at two sites. Methane production ranged from 0 to 560 μmol · m^-2 · day^-1 at one site (A), while a range of 0 to 120,000 μmol · m^-2 · day^-1 was measured at site B. The mean and standard deviations associated with methane production at site A were 17 and 57 μmol · m^-2 · day^-1, respectively. The comparable summary statistics for site B were 2,000 and 9,900 μmol · m^-2 · day^-1. The coefficients of variation at sites A and B were 340 and 490%, respectively. Despite these differences, the two sites had similar seasonal trends, with the maximal rate of methane production occurring in summer. However, the relative variability associated with the seasonal rates changed very little. Our results suggest that (i) two spatially distinct sites exist in the aquifer, (ii) methanogenesis is a highly variable process, (iii) the coefficient of variation varied little with the rate of methane production, and (iv) in situ anaerobic biodegradation rates are lognormally distributed.     

Production biology of copepods and cladocerans in three south-east Sri Lankan low-land reservoirs and its comparison to other tropical freshwater bodies

Production, biomass and productivity of the microcrustacean zooplanktonpopulations of three low-land reservoirs, Tissawewa (eutrophic), Ridiyagama(moderately eutrophic), and Muruthawela (mesotrophic) in South-east SriLanka were studied. The temporal variation of zooplankton production wasstudied in Tissawewa on basis of fortnightly sampling on five fixed samplingstations for 2 years. Zooplankton production was relatively high, mainlybecause of high copepod production predominantly realised due to twocalanoid copepods, Phyllodiaptomus annae and Heliodiaptomus viduus. Abouthalf of the copepod production was contributed by the naupliar instarstages, whereas the contribution of the eggs was generally much smaller(<20%). In contrast, the cladoceran production consisted for ca50–70% of egg production. The results of this study werecompared with those from more than twenty other tropical and subtropicalwaterbodies reported in the literature by deriving empirical relationshipsbetween mean phytoplankton biomass and mean zooplankton biomass andproduction. Mean zooplankton biomass and annual zooplankton production werefound to be positively related to mean phytoplankton biomass, and meanphytoplankton biomass proved to be a good predictor of mean zooplanktonbiomass (r² = 0.58) and a moderate good predictor ofannual zooplankton production (r² = 0.43). However,the relationships between the mean phytoplankton biomass and zooplankton P/Bwere not significant neither for small-bodied and large-bodied cladoceransnor for copepods.     

Preliminary results of an experimental study of the effects of mysid predation on estuarine zooplankton community structure

In a shallow estuarine system near Beaufort, North Carolina, a period of high winter abundance of the mysidsMysidopsis bigelowi andNeomysis americana was associated with a change in zooplankton species composition, from dominance byAcartia tonsa to dominance byCentropages spp. andSaphirella sp. Both mysids feed onA. tonsa at higher rates than the other copepods. Experiments were carried out in 600–1 000 liter enclosures, in which the initial mysid density was manipulated and the effects on the enclosed copepod community were monitored. Mysid predation had a significant effect on copepod densities. The effects of mysid predation on species composition appeared to depend on the relationship between their prey preferences and the dominant copepod species present in the communities. Under conditions favoring dominance byA. tonsa, the preferred prey species, the results suggested that mysid predation may reduce dominance and increase diversity. But when the less preferredCentropages was dominant, mysid predation had no effect on species composition.     

Bacteriohopanepolyols along redox gradients in the Humboldt Current System off northern Chile

Marine oxygen minimum zones (OMZs) are characterized by the presence of subsurface suboxic or anoxic waters where diverse microbial processes are responsible for the removal of fixed nitrogen. OMZs have expanded over past decades and are expected to continue expanding in response to the changing climate. The implications for marine biogeochemistry, particularly nitrogen cycling, are uncertain. Cell membrane lipids (biomarkers), such as bacterial bacteriohopanepolyols (BHPs) and their degradation products (hopanoids), have distinctive structural attributes that convey information about their biological sources. Since the discovery of fossil hopanoids in ancient sediments, the study of BHPs has been of great biogeochemical interest due to their potential to serve as proxies for bacteria in the geological record. A stereoisomer of bacteriohopanetetrol (BHT), BHT II, has been previously identified in OMZ waters and has as been unequivocally identified in culture enrichments of anammox bacteria, a key group contributing to nitrogen loss in marine OMZs. We tested BHT II as a proxy for suboxia/anoxia and anammox bacteria in suspended organic matter across OMZ waters of the Humboldt Current System off northern Chile, as well as in surface and deeply buried sediments (125–150 ky). The BHT II ratio (BHT II/total BHT) increases as oxygen content decreases through the water column, consistent with previous results from Perú, the Cariaco Basin and the Arabian Sea, and in line with microbiological evidence indicating intense anammox activity in the Chilean OMZ. Notably, BHT II is transported from the water column to surface sediments, and preserved in deeply buried sediments, where the BHT II ratio correlates with changes in δ¹⁵N sediment values during glacial–interglacial transitions. This study suggests that BHT II offers a proxy for past changes in the relative importance of anammox, and fluctuations in nitrogen cycling in response to ocean redox changes through the geological record.     

大洋最小含氧带生物地球化学循环及微生物多样性研究进展

大洋的最小含氧带(oxygen minimum zones,OMZs)具有特殊的水动力和氧含量特征,该区域是氮流失的主要场所,也是各类生化反应发生的重要区域。OMZs的存在会对浮游生物的丰度、多样性、分布模式及呼吸方式产生较大影响。大洋OMZs中存在广泛的反硝化、厌氧氨氧化、甲烷厌氧氧化和隐性厌氧硫氧化作用等都是海洋物质循环的关键环节。全球海洋OMZs的规模在人类活动和全球变暖等因素的影响下也呈现出逐渐扩大的趋势。低氧环境的变化可以通过微生物多样性和群落结构稳定性进行判断,因此了解该区域的多样性水平是十分必要的。现有研究虽然对海洋OMZs的生物地球化学循环、微生物多样性和生态效应有了一定的认识,但对该区域总体情况和微生物生态学研究现状的系统性综合论述还较少,对海洋低氧环境的微生物活性、群落结构稳定性和分子代谢过程的研究还有较大的探讨空间。本文介绍了海洋低氧环境的分布情况和生态环境效应,全面且详细地论述了OMZs内各物质循环过程和微生物多样性的研究现状,指出尚未很好解决的生态学问题。     

Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium

A combination of stable isotopes (¹⁵N) and molecular ecological approaches was used to investigate the vertical distribution and mechanisms of biological N₂ production along a transect from the Omani coast to the central–northeastern (NE) Arabian Sea. The Arabian Sea harbors the thickest oxygen minimum zone (OMZ) in the world''s oceans, and is considered to be a major site of oceanic nitrogen (N) loss. Short (<48 h) anoxic incubations with ¹⁵N-labeled substrates and functional gene expression analyses showed that the anammox process was highly active, whereas denitrification was hardly detectable in the OMZ over the Omani shelf at least at the time of our sampling. Anammox was coupled with dissimilatory nitrite reduction to ammonium (DNRA), resulting in the production of double-¹⁵N-labeled N₂ from ¹⁵NO₂⁻, a signal often taken as the lone evidence for denitrification in the past. Although the central–NE Arabian Sea has conventionally been regarded as the primary N-loss region, low potential N-loss rates at sporadic depths were detected at best. N-loss activities in this region likely experience high spatiotemporal variabilities as linked to the availability of organic matter. Our finding of greater N-loss associated with the more productive Omani upwelling region is consistent with results from other major OMZs. The close reliance of anammox on DNRA also highlights the need to take into account the effects of coupling N-transformations on oceanic N-loss and subsequent N-balance estimates.