Spectroscopic and structural investigation of two (2,2′-bipyridyl)bis(N-protected-aminoacidato)copper(II) complexes,two compounds containing truly CuN2O2 chromophore

The compounds of formula [Cu(bipy)(acleuO)₂] (1) and [Cu(bipy)(ts-β-alaO)₂] (2) (bipy = 2,2′-bipyridil, acleuO = N-acetyl-DL-leucinate anion, ts-β-alaO = N-tosyl-β-alaninate anion) were synthesized and characterized by means of spectroscopic and structural measurements. Complex (1) crystallizes in the monoclinic space group C2/c with cell parameters a = 17.465(4), b = 19.740(5), c = 9.080(2) Å, β = 115.0(1)° with Z = 4; complex (2) crystallizes in the triclinic space group P$\text{1}$, with cell parameters a = 14.489(3), b = 14.308(3), c = 8.659(1) Å, α = 75.0(1), β = 74.6(1), γ = 66.6(1)°, Z = 2. Both structures were solved by conventional Patterson and Fourier methods and refined to R factors of 4.10 and 3.8% respectively. In both crystals the Cu atom is four-coordinated by the nitrogen atoms of a bipy molecule and two carboxylate oxygens of two N-protected aminoacid anions acting as unidentate ligands. The only significant difference between the coordination geometry of (1) and (2) is in the tetrahedral distortion of the coordination plane. Complex (2) is strictly planar, while in complex (1) the distortion expressed by the dihedral angle between the (N)(1)CuN(1′) and O(1)CuO(1′) planes is 20.8°. The electronic and EPR results agree with these different coordination geometries. The infra-red data are consistent with a truly monodentate carboxylate group. The spectroscopic results on a series of previously investigated [Cu(bipy)(N-protected aminoacidato)²] complexes of unknown structures are discussed again in the light of the present structural reports.     

Crystallographic study of plastocyanins

Crystals of plastocyanins from pea and corn leaves have been obtained. Both are suitable for X-ray structure analysis with a resolution up to 1.8 Å. The crystal form of plastocyanin from pea leaves belongs to the space group P2₁2₁2₁ with unit cell dimensions: $\text{a = 49.0}\text{A}\text{?}\text{, b = 53.3}\text{A}\text{?}\text{, c = 82.6}\text{A}\text{?}$. The assumed number of protein molecules per asymmetric unit of the unit cell is two. Crystals of the oxidized (Cu²⁺) and reduced (Cu⁺) forms are isomorphic. No essential differences in spot intensities for the main zone with a resolution of 3 Å were revealed. The crystal form of plastocyanin from corn leaves belongs to the space group P1 with unit cell parameters: $\text{a = 24.8}\text{A}\text{?}\text{, b = 30.0}\text{A}\text{?}\text{, c = 58.5}\text{A}\text{?}$ and α = 96° 10′, β = 87°08′, γ = 78°40′. The assumed number of protein molecules per asymmetric unit is two.     

The crystal structure of galactaric acid (mucic acid) at −147°: An unusually dense,hydrogen-bonded structure

Galactaric acid, C₆H₁₀O₈, (CAS Reg. No. 526-99-8), is triclinic, P$\text{1}$, with cell dimensions at ?147° [and 20°], a = 4.900(1) [4.918(1)], b = 5.728(1) [5.816(1)], c = 6.784(1) [6.849(1)] Å, α = 92.32(2) [92.31(2)], β = 93.74(2) [94.16(2)], γ = 93.08(2) [93.49(2)]°, V = 189.5 ų, Z = 1, D_x = 1.831 [1.800], D_m = [1.790] g.cm^?3, molecular symmetry $\text{I}$. The structure was solved by the direct method, MULTAN, and refined to R = 0.034, R_w = 0.039 for 787 reflections with F_Obs > 3σ(F_obs). The crystal structure has a system of strong, intermolecular hydrogen-bonds, which accounts for the high crystal density and low solubility in water.     

Studies on the metal—amide bond. XVII. The crystal and molecular structure of the α-form of aqua[N,N′-bis(2′-pyridinecarboxamido)-1,3-propane] copper(II) dihydrate

α-Aqua[N,N′-bis(2′-pyridinecarboxamido)-1,3-propane]copper(II) dihydrate, C₁₅H₂₀N₄O₅Cu, is monoclinic, space group P2₁/c, with a = 11.719(2), b = 13.092(2), c = 12.663(2) Å, β = 119.56(1)°, Z = 4. The structure was refined to R = 0.026 for 2398 diffractometer data using full-matrix least-squares methods. The copper atom is five-coordinate with the N₄-tetradentate ligand encompassing the base of a distorted square-based pyramid which is appreciably distorted towards a trigonal bipyramid [average Cu-N(amide) 1.950(2), Cu-N(pyridine) 2.043(2) Å, N(amide)-Cu-N(amide) 94.5(1), N(pyridine)-Cu-N(pyridine) 100.2(1)°] and with the copper atom lying 0.27 Å above the N₄ plane towards the apical water molecule [Cu-O 2.236(2) Å]. The central six-membered chelate ring adopts a skewed boat conformation and the enforced strain in the molecule results in non-planar distortions in the pyridine rings with only small distortions in the amide groups. The molecules pack in sheets parallel to (10$\text{1}$) and the hydrogen-bonding network involves the water molecules and the amide oxygen atoms of the ligand.     

Preliminary x-ray diffraction studies on the "goose-type" lysozyme from the egg-white of the black swan Cygnus atratus

The “goose-type” lysozyme isolated from the egg-white of the black swan Cygnus atratus has been crystallized. The space group is P2₁ with one molecule of protein in the asymmetric unit. The cell parameters are $\text{a = 46.2}\text{A}\text{?}\text{, b = 65.1}\text{A}\text{?}\text{, c = 38.7}\text{A}\text{?}$, β = 110 °. The crystals diffract to a resolution of 2.25 Å and a set of diffraction data for the native protein has been collected photographically.     

X-ray structure of a mono(1-methylthyminato) complex of cisplatin,chloro-(1-methylthyminato-N3)-cis-diammineplatinum(II) monohydrate

The crystal structure of chloro-(1-methyltyminato- N3)-cis-diammineplatinum(II) monohydrate, cis- (NH₃)₂Pt(C₆H₇N₂O₂)Cl·H₂O, is reported. The compound crystallizes in space group P$\text{1}$ with a = 6.911(2) Å, b = 8.598(3) Å, c = 11.464(4) Å, α = 100.13(3)°, β = 120.03(3)°, γ = 93.16(3)°, Z = 2. The structure was refined to R = 0.048 and R_w = 0.057. The compound contains the deprotonated 1-methylthymine ligand coordinated to Pt through N3 (1.973(10) Å). This distance represents the shortest Pt-N3(pyrimidine-2.4-dione) bond reported so far. The two PtNH₃ bond lengths differ significantly: PtNH₃ (trans to Cl) is longer (2.052(10) Å) than PtNH₃ (trans to N3 of 1-MeT) (2.002(11) Å). The PtCl distance (2.326(3) Å) is normal, as is the large dihedral angle between the Pt coordination plane and the nucleobase (76.5°).     

Crystallographic analysis of the phytoagglutinin from Abrus precatorius by X-ray diffraction and electron microscopy

The lectin from the seeds of Abrus precatorius has been crystallized and the crystals subjected to study by X-ray diffraction and electron microscopy. Three closely related crystal forms were obtained, of orthorhombic space group P2₁2₁2₁ with $\text{a = 138}\text{A}\text{?}$, $\text{b = 142}\text{A}\text{?}$, and $\text{c = 173}\text{A}\text{?}$, of tetragonal space group P4₁2₁2 with $\text{a = b = 136}\text{A}\text{?}$, $\text{c = 176}\text{A}\text{?}$, and a twinned intermediate of the first two. From electron microscopy and two-dimensional spatial filtering of electron micrographs of the crystals, the molecule appears to consist of four similar domains grouped in a roughly planar diamond-shaped arrangement having a local intramolecular dyad axis. The average diameter of the Abrus lectin molecule is 50 to 60 Å and the individual domains appear to have a diameter of about 25 Å.     

Variability of niobiumsulfur bond lengths: The molecular structures of sulfido-tris(N,N-diethyldithiocarbamato)niobium(V)

In a further examination of the multiply bonded NbS group, the structure of NbS(S₂CNEt₂)₃ has been determined. The compound crystallizes in triclinic space group P$\text{1}$ with a = 9.870(1), b = 15.743(2), c = 16.804(3) Å, α = 101.69(1)°, β = 93.51(1)°, γ = 91.12(1)°, and Z = 4. With use of 6709 unique data (F_O² > 3σ(F_O²)) the structure was refined to R(R_w) = 3.1(3.5%). The crystal contains two inequivalent molecules with distorted pentagonal bipyramidal coordination in which a sulfide atom occupies an axial position. The molecules are differentiated by ethyl group orientations and significantly different NbS bond lengths of 2.122(1) and 2.168(1) Å. Full structural details are reported. The results fall within the ca. 2.09–2.20 Å interval established with other molecules and emphasize the variability in bond length of the NbS group. Stretching frequencies and bond lengths show a rough inverse dependence. For square pyramidal [NbSCl₄]^1?, with a relatively high NbS bond order, v_NbS = 552 cm^?1 is associated with a bond length of 2.085(5) Å and an overlap population of 0.64.     

Crystallization of ribonuclease St

The crystals of ribonuclease St, the extracellular ribonuclease from Streptomyces erythreus, have been obtained from (NH₄)₂SO₄ solution with acetate buffer (pH 4.1). The crystals belong to a monoclinic space group C2 with dimensions $\text{a = 88.4}\text{A}\text{?}\text{, b = 33.0}\text{A}\text{?}\text{, c = 69.0}\text{A}\text{?}\text{, β = 98.4 °}$. There are two protein molecules per asymmetric unit. The crystals diffract beyond 2.0 Å resolution.     

Syntheses of iron(III) aroyl hydrazones containing pyridoxal and salicylaldehyde. The crystal and molecular structure of two iron(III)-pyridoxal isonicotinoyl hydrazone complexes

Iron(III) complexes of three aroyl hydrazones, pyridoxal isonicotinoyl hydrazone (H₂pih), pyridoxal benzoyl hydrazone (H₂pbh), and salicylaldehyde benzoyl hydrazone (H₂sbh), were synthesized and characterized. In aqueous medium at pH 7, [Fe(pih)(Hpih)]·3H₂O is formed. In acidic methanol, a 1:1 ligand-to-metal complex is formed, [FeCl₂(H₂pih)]Cl (1), whereas in aqueous medium at low pH cis-[FeCl₂(H₂pih)(H₂O)]Cl·H₂O (2) is formed. Compounds 1 and 2 are high-spin d⁵ with μ_eff = 5.88 μ_B and 5.93 μ_B (298 K). The crystal structures of 1 and 2 show that H₂pih acts as a tridentate neutral ligand in which the phenolic and hydrazidic protons have shifted to the pyridine nitrogen atoms. The co- ordination polyhedron of 1 is ‘square’ pyramidal, whereas that of 2 is pseudo-octahedral. Compound 1 is triclinic, space group P$\text{l}$, with a = 12.704(2) Å, b = 8.655(2) Å, c = 8.820(2) Å, α = 105.42(1)°, β = 89.87(1)°, γ = 107.60(1)°, V = 888 ų, and Z = 2; 2 is monoclinic, space group P2₁/c, with a = 15.358(4) Å, b = 7.304(3) Å, c = 17.442(4) Å, β = 101.00(2)°, V = 1921 ų, and Z = 4.     

Spectroscopy and crystal structure of neodymium coordination compound with glycine: Nd2(Gly)6·(ClO4)6·9H2O

Neodymium complex compound with glycine: Nd₂(Gly)₆·(ClO₄₆·9H₂O was synthesized and obtained in the form of monocrystals. Absorption spectra recorded in the region of 8000–35 000 cm^-1 were measured along the crystallographic axes. Intensities of the f-f transitions were analysed on the basis of the Judd theory. The X-ray crystal structure determination of the complex is reported. Crystals are triclinic, space group P$\text{I}$, with a = 11.554(4) Å, b = 14.108(1) Å, c = 15.660(3) Å, α = 97.14(1)°, β = 102.82(2)°, γ = 105.28(1)°, V = 2355.25 ų Z = 2, M.W. = 1495.4, D_c = 2.129)(3) g cm^-3, D^m = 2.103(1) g cm^-3. The structure was solved by Patterson's method and successive Fourier syntheses giving the locations of all nonhydrogen atoms. The final R factor was 0.062 and R_w = 0.073 for 12869 reflections with |F_o| > 5σ|(F_o)|. The asymmetric unit consists of a dimeric formula unit. The coordination polyhedron of Nd atoms comprises seven oxygen atoms from glycine and two from water molecules. The neodymium-glycine bonding mode is compared with that of the calcium-glycine complex.     

Crystallization and preliminary crystallographic data of rabbit uteroglobin

Uteroglobin is a steroid-binding protein of 15,800 molecular weight, composed of two chemically identical subunits which, in the oxidized form, are covalently linked by disulphide bridges. Large crystals have been grown from ammonium sulphate solutions by vapour diffusion as well as by equilibrium dialysis. The crystals are very stable under X-rays, diffract to at least 2.2 Å resolution and belong to space group P2₁. The unit cell, with dimensions $\text{a = 43.3}\text{A}\text{?}\text{, b = 31.1}\text{A}\text{?}\text{, c = 34.5}\text{A}\text{?}\text{, and}\text{β = 90.7 °}$, contains two dimeric molecules. The crystals exhibit a prominent pseudo symmetry corresponding to space group P2₁2₁2 which indicates that the two subunits should be structurally nearly identical.     

Isolation of a sequence-specific endonuclease (BamI) from Bacillus amyloliquefaciens H.

Flavodoxin isolated from the blue-green alga, Anacystis nidulans, crystallizes from ammonium sulfate in space group P2₁2₁2₁, with $\text{a = 57.08}\text{A}\text{̊}\text{, b = 69.24}\text{A}\text{̊}\text{and}\text{c = 45.55}\text{A}\text{̊}$. The diffraction patterns extend to a resolution of at least 1.8 Å. Reduction of the flavin mononucleotide in the crystalline protein, to either the semi-quinone or fully reduced (hydroquinone) state, results in minimal changes in cell dimensions and diffracted intensities. The higher molecular weight (19,000 to 20,000) and spectral properties of the A. nidulans protein, along with the near-isomorphism of crystals of the three oxidation states, distinguish this crystalline flavodoxin from the corresponding proteins of Clostaridium MP and Desulfovibrio vulgaris, whose three-dimensional structures are known. In contrast to Clostridium flavodoxins, but like the D. vulgaris protein, A. nidulans flavodoxin is capable of binding riboflavin in place of flavin mononucleotide (K_a = 2 × 10⁶m⁻¹).     

Highly ordered crystals of the plant seed protein crambin.

Crystals of crambin, a plant seed protein of molecular weight 5000, diffract X-rays strongly to the interplanar spacing limit of 0.88 Å. These diffraction data should allow a definition of atomic structure that is on a par with that typically obtained from crystals of small organic molecules. The crystals are in space group P2₁ and have unit cell dimensions $\text{a = 41.1}\text{A}\text{?}\text{, b = 18.7}\text{A}\text{?}\text{, c = 22·7}\text{A}\text{?}\text{,}\text{and}\text{β = 90.6 °}$. The asymmetric unit contains one protein molecule.     

Crystallization of mouse submaxillary gland renin

Renin isolated from the mouse submaxillary gland has been crystallized and is being subjected to X-ray diffraction analysis.The observed crystalline form has the following unit cell dimensions: $\text{a = 96.4 (1)}\text{A}\text{?}\text{, b = 104.4 (1)}\text{A}\text{?}\text{, c = 77.4 (1)}\text{A}\text{?}\text{, β = 101.2 (1) °}$, space group P2₁, Z = 8 (4 protein molecules in the asymmetric unit).Native data have been recorded at 5 Å resolution with an automatic diffractometer.     

Time resolved spectroscopy of the tryptophyl fluorescence of the E. coli LAC repressor.

A new crystal form of a mitogenic lectin from pea seeds ($\text{Pisum sativum}$) has been obtained which is suitable for high resolution structural work. The crystals are orthorhombic, space group P2₁2₁2₁, with unit cell dimensions: $\text{a}$ = 64.2Å, $\text{b}$ = 72. 7Å, $\text{c}$ = 108. 3Å. The asymmetric unit contains one protein molecule.     

Disco-ordinate expression of the Escherichia coli gal operon after prophage lambda induction.

EcoRI endonuclease crystallizes in space group C2 with unit cell parameters $\text{a = 209}\text{A}\text{?}\text{, b = 129}\text{A}\text{?}\text{, c = 50}\text{A}\text{?}\text{and}\text{β = 98.4 °}$. Four 29,000 molecular weight subunits per asymmetric unit would give a reasonable V_m value of 2.87 ų/dalton. EcoRI endonuclease is the first protein which recognizes a specific sequence of bases in DNA to be crystallized in a form suitable for high resolution structure analysis.     

Crystal structure of [chloro(diethyldithiocarbamato)butyl phenyl]tin(IV)

The crystal structure of the title compound, SnCl(C₆H₅)(C₄H₉)[S₂CN(C₂H₅)₂], was determined and refined to an R factor of 3.2% for 4876 reflections. The molecule contains five-coordinate tin in a distorted trigonal bipyramidal arrangement with the tin atom lying 0.20 Å below the equatorial plane formed by one of the sulphur atoms, S(1), and the donor carbons of the butyl and phenyl groups. The chlorine and the other sulphur atom, S(2), occupy axial sites, making a S(2)SnCl angle of 156.85(1)°. The SnS(2) bond is markedly elongated (2.764(1) Å) compared to the SnCl bond (2.449(1) Å) and the SnS(1) bond (2.454(1) Å). The structure resembles those of analogues such as (C₆H₅)₂Sn(glygly) in having both hydrocarbon ligands located in the equatorial plane. Crystal data: space group P$\text{1}$: a = 8.291(2) Å, b = 14.726(3) Å, c = 9.509(2) Å, α = 96.24(2)°, β = 107.02(3)°, γ = 116.70(2)°, Z = 2, R = 3.2% for 4876 independent reflections.     

Molecular and crystal structure of the regenerated form of (1→3)-α-d-glucan

The crystal structure of a regenerated form of (1→3)-α-d-glucan, obtained by solid state deacetylation of the triacetate derivative, has been determined by combined X-ray diffraction analysis and stereochemical model refinement. The structure crystallizes in an orthorhombic unit cell with parameters $\text{a = 16.46}\text{A}\text{?}\text{, b = 9.55}\text{A}\text{?}$ and c (fibre repeat)=8.44 Å, and space group P2₁2₁2₁. The chain conformation is nearly completely extended and is very close to a 2/1 helix, even though the dimer residue is the crystallographic repeat unit. An intramolecular O(2)  O(4)′ hydrogen bond stabilizes the conformation and extensive intermolecular hydrogen-bonding abilizes the packing. The resulting structure is sheet-like, with an alternating polarity of chain directions within the sheet. In its sheet-like character, extensive hydrogen-bonding, and insolubility in water, this polymorph of (1→3)-α-d-glucan resembles regenerated cellulose. The reliability of the structure analysis is indicated by the X-ray residual R=0.206.     

Preliminary X-ray studies on Pseudomonas isoamylase

Single crystals of Pseudomonas isoamylase (M_r 95,000) belong to space group P2₁2₁2₁ with unit cell dimensions of $\text{a = 137.9}\text{A}\text{?}\text{, b = 52.9}\text{A}\text{?}\text{, c = 151.2}\text{A}\text{?}$. A Guinier plot of the X-ray small-angle scattering of the protein solution gave the radius of gyration of the molecule as 27.5 Å.