Plant-associated invertebrates and hydrological balance in the large volcanic Lake Bracciano (Central Italy) during two years with different water levels

Sampling benthic communities usually requires intensive field and lab work which is generally performed by skilled staff. In algal dominated communities, like those on the shores of the Azores, biotope characterization studies focused on the more conspicuous algae categories, thus reducing the skills required for species identification. The present study compares in situ quadrat quantifications done by a skilled reader, with computer based quadrat quantifications using digital photographic records of the same areas read in situ, accomplished by skilled and non-skilled readers. The study was conducted inter- and subtidally at various shore heights/depths. Quantification of algal coverage, both in situ and computer based, used the point to point method with quadrats of 0.25 m × 0.25 m for the intertidal, and 0.50 m × 0.50 m for the subtidal surveys, both subdivided into 36 intersection points. Significant differences were found between in situ readings and computer based readings of photographic records conducted both by experienced and inexperienced readers. Biotopes identified using in situ data and image based data differ both for the subtidal and intertidal.     

Can digital image classification be used as a standardised method for surveying peatland vegetation cover?

The ability to carry out systematic, accurate and repeatable vegetation surveys is an essential part of long-term scientific studies into ecosystem biodiversity and functioning. However, current widely used traditional survey techniques such as destructive harvests, pin frame quadrats and visual cover estimates can be very time consuming and are prone to subjective variations. We investigated the use of digital image techniques as an alternative way of recording vegetation cover to plant functional type level on a peatland ecosystem. Using an established plant manipulation experimental site at Moor House NNR (an Environmental Change Network site), we compared visual cover estimates of peatland vegetation with cover estimates using digital image classification methods, from 0.5 m × 0.5 m field plots. Our results show that digital image classification of photographs taken with a standard digital camera can be used successfully to estimate dwarf-shrub and graminoid vegetation cover at a comparable level to field visual cover estimates, although the methods were less effective for lower plants such as mosses and lichens. Our study illustrates the novel application of digital image techniques to provide a new way of measuring and monitoring peatland vegetation to the plant functional group level, which is less vulnerable to surveyor bias than are visual field surveys. Furthermore, as such digital techniques are highly repeatable, we suggest that they have potential for use in long-term monitoring studies, at both plot and landscape scales.     

Community assessment techniques and the implications for rarefaction and extrapolation with Hill numbers

Diversity estimates play a key role in ecological assessments. Species richness and abundance are commonly used to generate complex diversity indices that are dependent on the quality of these estimates. As such, there is a long‐standing interest in the development of monitoring techniques, their ability to adequately assess species diversity, and the implications for generated indices. To determine the ability of substratum community assessment methods to capture species diversity, we evaluated four methods: photo quadrat, point intercept, random subsampling, and full quadrat assessments. Species density, abundance, richness, Shannon diversity, and Simpson diversity were then calculated for each method. We then conducted a method validation at a subset of locations to serve as an indication for how well each method captured the totality of the diversity present. Density, richness, Shannon diversity, and Simpson diversity estimates varied between methods, despite assessments occurring at the same locations, with photo quadrats detecting the lowest estimates and full quadrat assessments the highest. Abundance estimates were consistent among methods. Sample‐based rarefaction and extrapolation curves indicated that differences between Hill numbers (richness, Shannon diversity, and Simpson diversity) were significant in the majority of cases, and coverage‐based rarefaction and extrapolation curves confirmed that these dissimilarities were due to differences between the methods, not the sample completeness. Method validation highlighted the inability of the tested methods to capture the totality of the diversity present, while further supporting the notion of extrapolating abundances. Our results highlight the need for consistency across research methods, the advantages of utilizing multiple diversity indices, and potential concerns and considerations when comparing data from multiple sources.     

An evaluation of the analysis system of video transects used to sample subtidal epibiota

Two popular methods of benthic cover estimation (the point intercept technique with two sets of position points, and digital interactive color segmentation) were compared with an alternative method of digital cover estimation using Bezier curves as a tool for outlining the objects on an images and AutoCAD® software for the final evaluation of abundance. The comparison was done using still video images obtained from two 10-m transects on subtidal rocks off the Rimsky-Korsakov islands in the Sea of Japan (Russia). Ten rectangular sectors (1×0.4 m each) selected randomly within both video transects were analyzed. One-way ANOVA for repeated measurements was used to test the differences between methods. The point intercept technique differed significantly from both methods of digital estimation and had an essential positive bias. The Tukey multiple comparison test revealed the differences among digital estimation methods in the species, which have the complicated color with many contrast spots. The proposed approach using Bezier curves has an advantage over the interactive color segmentation if the objects under selection are lit at different levels or have a contrast coloration or are hidden by canopy organisms. Besides, estimation of cover in the field of AutoCAD® software is more precise and takes less time than that obtained using a scaled grid, available for automatically segmented species. The results showed that digital cover estimation using Bezier curves and AutoCAD® software is a convenient method for analyzing benthic samples at large spatial scales.     

Six years of submerged plant community dynamics in a freshwater tidal wetland

1. The dynamics of a submerged plant community were studied for 6 years in a freshwater tidal wetland. The degree and nature of change at several spatial scales (quadrat, transect and overall community) was determined, and the implications for community stability were assessed. 2. A high degree of change was recorded in 1 m² quadrats, and this was reflected in 10 m² transects as well. In quadrats, mean species richness changed every year. Species richness changed in >60% of quadrats each year. Stem number changed by as many as several 100 stems per quadrat from one year to the next. 3. Richness varied more among quadrats than among transects and varied less at the community level than among either quadrats or transects. Greater stability at the spatial scale of the whole community was reflected in high scores on the Jaccard and Morasita–Horn indices and Kendall's coefficient of concordance. 4. Although most of the submerged species were perennials, persistence at the local scale was low, and 4‐year persistence exceeded 50% for only one species. Change in abundance was largely independent among the species. 5. In the face of great small‐scale changes, species remain in the community (and the community persists) because of high recruitment rates.     

Image quality assessment with dose reduction using high kVp and additional filtration for abdominal digital radiography

PurposeDose reduction using additional filters with high kilovoltage peak (kVp) for abdominal digital radiography has received much attention recently. We evaluated image quality with dose reduction in abdominal digital radiography by using high kVp and additional copper filters at a tertiary hospital.MethodsBetween June 2016 and July 2016, 82 patients underwent abdominal digital radiography using 80 kVp in X-ray room 1 and 82 were imaged using 92 kVp with 0.1-mm copper filtration in X-ray room 2. The effective dose was calculated using a PC-based Monte Carlo program. Image quality of the abdominal radiography acquired in the two rooms was evaluated using a five-point ordinal scale, as well as the signal-to-noise and contrast-to-noise ratios.ResultsThe mean effective dose decreased by 25.8% and 25.7% for the supine and standing positions, respectively, when abdominal digital radiography using 92 kVp with 0.1-mm copper filtration was performed. In the 20 patients who performed abdominal digital radiography twice in each room, visual grading scores for visualisation of psoas outlines and kidney outlines are higher in room 1. However, there was no statistical significant difference of visual grading scores among the 124 patients who underwent only one abdominal radiography in the room 1 or 2 (P > 0.05).ConclusionsDose reduction for abdominal digital radiography can be achieved with comparable image quality by performing abdominal digital radiography using 92 kVp with 0.1-mm copper filtration, despite the higher AEC dose.     

Optimal photon energy comparison between digital breast tomosynthesis and mammography: A case study

A comparison, in terms of the optimal energy that maximizes the image quality between digital breast tomosynthesis (DBT) and digital mammography (DM) was performed in a MAMMOMAT Inspiration system (Siemens) based on amorphous selenium flat panel detector. In this paper we measured the image quality by the signal difference-to-noise ratio (SDNR), and the patient risk by the mean glandular dose (MGD). Using these quantities we compared the optimal voltage that maximizes the image quality both in breast tomosynthesis and standard mammography acquisition mode. The comparison for the two acquisition modes was performed for a W/Rh anode filter combinations by using a 4.5 cm tissue equivalent mammography phantom. Moreover, in order to check if the used equipment was quantum noise limited, the relation of the relative noise with respect to the detector dose was evaluated. Results showed that in the tomosynthesis acquisition mode the optimal voltage is 28 kV, whereas in standard mammography the optimal voltage is 30 kV. The automatic exposure control (AEC) of the system selects 28 kV as optimal voltage both for DBT and DM. Monte Carlo simulations showed a qualitative agreement with the AEC selection system, since an optimal monochromatic energy of 20 keV was found both for DBT and DM. Moreover, the check about the noise showed that the system is not completely quantum noise limited, and this issue could explain the experimental slight difference in terms of optimal voltage between DBT and DM. According to these results, the use of higher voltage settings is not justified for the improvement of the image quality during a DBT examination.     

Habitat niche specialization in an understory species in a warm temperate forest

Relationships between microhabitat variables; understory light conditions in summer and winter, altitude, slope inclination and topographic categories (valley, ridge, and slope) and the distribution of Aucuba japonica Thunb. (Cornaceae), a common understory shrub species in Japan were examined using non-contagious 66, 20 × 20 m² quadrats. The Morishita’s I _δ suggested that A. japonica distributions were strongly heterogeneous among the quadrats. Therefore positive spatial autocorrelation of A. japonica at a within-quadrat level (≤20 m) was obvious. Moran’s I statistics showed a significant positive spatial autocorrelation in A. japonica abundance within the distance shorter than 60 m. But the partial Mantel tests suggested that the mass effect from neighboring quadrats would little explain A. japonica abundance in a quadrat. The partial Mantel tests also clearly showed that A. japonica distributions were strongly structured by topography and understory light conditions. Using Monte Carlo randomization tests, we found that A. japonica was aggregately distributed in quadrats in valley which were covered by deciduous canopies. Better understory light conditions in winter together with valley edaphic conditions may increase the abundance of A. japonica there. It is concluded that habitat niche specialization is important in structuring distribution of A. japonica in this forest community.     

Using time-lapse digital video recording for a nesting study of birds of prey

Remote photography using various photo, movie or video devices has been employed in numerous studies in wildlife research during the last 50 years. Given the rapid advances in digital technologies, digital video and photo techniques are becoming more common in use, and publications that introduce a new method or equipment for video surveillance in wildlife research (and in ornithological studies particularly) are appearing almost every year. However, still no special guide to the great variety of equipment and methods is available, and the choice and use of suitable gear for scientific purposes may be difficult for non-specialists. In this paper, we review the most common surveillance techniques used in today’s nest studies, as well as the most essential properties of image recording equipment. We also describe the digital video recording technique, which we used for observations of raptor nests, and summarise our experience of its operation. As an example of the obtained data, we present the timing of prey deliveries of goshawks and common buzzards.     

Temporal changes in the strength of density-dependent mortality and growth in intertidal barnacles

1. In demographically open marine systems, the extent to which density-dependent processes in the benthic adult phase are required for population persistence is unclear. At one extreme, represented by the recruitment limitation hypothesis, larval supply may be insufficient for the total population size to reach a carrying capacity and density-independent mortality predominates. At the opposite extreme, populations are saturated and density-dependent mortality is sufficiently strong to reshape patterns established at settlement. 2. We examined temporal variation in the way density-independent and density-dependent mortality interact in a typical sessile marine benthic invertebrate, the acorn barnacle Semibalanus balanoides (L.), over a 2-year period. 3. Recruitment was manipulated at two high recruitment sites in north Wales, UK to produce recruit densities covering the range naturally found in this species. Following manipulation, fixed quadrats were monitored using digital photography and temporal changes in mortality and growth rate were examined. 4. Over a 2-year period there was a clear, spatially consistent, over-compensatory relationship between the density of recruits and adult abundance indicating strong density-dependent mortality. The strength of density dependence intensified with increasing recruitment. 5. Density-dependent mortality did not operate consistently over the study period. It only operated in the early part of the benthic phase, but the pattern of adult abundance generated was maintained throughout the whole 2-year period. Thus, early life-history processes dictated adult population abundance and dynamics. 6. Examination of the natural recruitment regime in the area of study indicated that both positive and negative effects of recruitment will occur over scales varying from kilometres to metres.     

Plant cover estimation based on the beta distribution in grassland vegetation

Cover is the most frequently used measure of abundance in vegetation surveys of grasslands, and various qualitative and semi-quantitative methods have been developed for visual estimation of this metric. Field survey is usually made with a point-grid plate. The frequency distributions of cover derived from point-grid counts follow a beta distribution. Combining point-grid counts from a field survey and the beta distribution for a statistical analysis, we developed an effort-saving cover-measurement method. Cover is measured with a transparent plastic plate on which, for example, 10 × 10 = 100 points are arranged in a lattice with 1-cm grid spacing (thus, one point count represents 1 cm² of cover). N quadrats are set out at randomly dispersed sites in a grassland, and, in each, the plastic plate is used for making counts. The number of grid points located above a given species is counted in every quadrat until the number of counted points reaches a given value c, which is determined in advance. If the number of counted points reaches c in a quadrat, the count is stopped and the quadrat is classified in the category “>c”. In quadrats where c is not attained, full point counts above the species bodies are made. Let g be the number of observed quadrats whose cover is ≤c. Using these g cover measurements and the number of quadrats (N − g) with cover >c, we can quantitatively estimate cover for each species and the spatial pattern index value based on the maximum likelihood method. In trial counts using this method, the time savings varied between 5% and 41%, depending on the shape of the cover frequency distribution. The mean cover value estimates agreed well with conventional measures without a stopping point (i.e., based on full counts of all points in each quadrat).     

Comparing two methods for estimating floral resource availability for insect pollinators in semi-natural habitats

Pollinator and flowering plant interactions play a critical role in maintaining most terrestrial ecosystems, including agroecosystems. Although estimates of floral resource availability are essential to understand plant–pollinator relationships, no generally accepted methodology exists to date. We compared two methods for sampling floral resources in a single meadow. About every three days, we recorded species lists of insect-pollinated plants with abundance categories assigned to each species (hereafter referred to as scanning) and we counted the flowering shoots in 36 2 × 2 m quadrats (hereafter quadrat sampling). These methods were compared with respect to (i) the number of species detected, (ii) estimated floral resource abundance, and (iii) temporal changes in flowering. With scanning, we found more potential nectar-plant species and species were found earlier than with quadrat sampling. With the latter, abundant species were found with higher probability than the scarce. Flower abundances were correlated between the two methods. We predicted that a cover of 6.3 ± 3.6% should be used for an appropriate estimate of flower abundance in our study site, although the optimal cover probably varies across different habitats. Furthermore, flower abundance changed 6% per day compared to the flowering peak. Overall, scanning seems to be more appropriate for detecting presence and the timing of species, while quadrats may provide higher resolution for abundance estimates. Increased sampling coverage and frequency may enhance research accuracy and using scanning and quadrat sampling simultaneously may help to optimize research effort. We encourage further development of sampling protocols.     

Biocatalytic ketone reduction—a powerful tool for the production of chiral alcohols—part I: processes with isolated enzymes

Traditional cultivation-based methods to quantify microbial abundance are not suitable for analyses of microbial communities in environmental or medical samples, which consist mainly of uncultured microorganisms. Recently, different cultivation-independent quantification approaches have been developed to overcome this problem. Some of these techniques use specific fluorescence markers, for example ribosomal ribonucleic acid targeted oligonucleotide probes, to label the respective target organisms. Subsequently, the detected cells are visualized by fluorescence microscopy and are quantified by direct visual cell counting or by digital image analysis. This article provides an overview of these methods and some of their applications with emphasis on (semi-)automated image analysis solutions.     

Increasing precision in randomised field experiments: barnacle microtopography as a predictor of Littorina abundance

We investigated whether measurements of barnacle microtopography could be used as covariates to increase precision in randomised field experiments with intertidal Littorina populations. We used image analysis to quantify the microtopography of the barnacles within 100 cm2 quadrats in July 1994 using as variables: number of barnacles, number of dead empty barnacles, mean distance to nearest neighbouring barnacle, total area covered by barnacles, and number of pockets of different size-classes [extra-small (< 0.15 cm2), small (0.15 and < 0.30 cm2), medium ( 0.30 and < 0.45 cm2), large ( 0.45 and < 0.60 cm2), and extra-large (0.60 cm2)] at least 75% surrounded by barnacles. We then used these variables to predict the abundance of Littorina spp. in the same quadrat. Two variables: the number of extra-small pockets and the number of small pockets accounted for 50% of the variation in total littorinid snail abundance among quadrats for January 1995 and for 47% of the variation for August 1994 but for only 16% of the variation for June 1994. However the single variable, the number of barnacles, accounted for 29–36% of the variation in snail abundance on these dates and can be measured without special equipment. The best combination of covariates was the number of extra-small pockets alone. The number of extra-small pockets between barnacles may be influencing the snail abundance by providing a refuge from wave shock and heat stress/desiccation. We suggest that the availability of these refuges among the barnacles could act as a density-dependent regulator of the total population size of a particular species of Littorina.     

Digital photography for rhinoplasty

Standardized, high-quality, preoperative photographs of the nose are critical for preoperative rhinoplasty planning, comparative postoperative assessment, and demonstration of surgical results. To produce these high-quality, reproducible photographs, it is essential to standardize lighting, to properly position the patient in standard views, to avoid lens distortion, and to maintain consistent camera-to-subject distances. Traditional photographic standards have been well documented in the literature; however, most do not address digital photography, and none address digital photography for rhinoplasty. Certain variables in digital photography that are not present in 35-mm photography can be critical to the appearance of the final image. Variables such as image color and contrast (which usually vary between digital cameras), focal length differences between 35-mm and most digital cameras, the effect of resolution and compression on image quality, and the effect of the printing method used can affect the appearance of the external anatomy of the nose in the final print or image. Lack of detail in the external nasal anatomy becomes an issue if the surgeon uses the photograph intraoperatively for reference, as the authors do. Initially, the authors experienced difficulties with observing subtleties in the tip-defining points and tip anatomy using digital photography when compared with our traditional methods of 35-mm photography. The lack of detail in the external anatomy was most prevalent in the frontal and basal views. Thus, the authors have since tailored their photographic methods to document the rhinoplasty patient to maximize the visual information of the external nasal anatomy in the photographic and the printed image. This article is intended to review the photographic principles for standardized rhinoplasty photography, address the additional considerations necessary when using digital photography, discuss the printing variables that can affect overall quality of the printed image, and discuss the authors' new method of photographing the rhinoplasty patient.     

Estimation of plant and leaf area index using three techniques in a mature native eucalypt canopy

Abstract Leaf area index (L) is a critical variable in monitoring and modelling forest condition and growth and is therefore important for foresters and environmental scientists to measure routinely and accurately. We compared three different methods for estimating L: a plant canopy analyser (PCA), a point‐quadrat camera method and digital hemispherical photography at a native eucalypt forest canopy at Tumbarumba in southern New South Wales, Australia. All of these methods produced indirect estimates of L based on the close coupling between radiation penetration and canopy structure. The individual L estimates were compared, and the potential advantages and disadvantages of each method were discussed in relation to use in forest inventory and in field data collection programmes for remote sensing calibration and verification. The comparison indicated that all three methods, PCA, digital hemispherical photography and the modified point‐quadrat camera method, produced similar estimates with a standard error between techniques of less than 0.2 L units. All methods, however, provided biased estimates of L and calibration is required to derive true stand L. A key benefit, however, of all of these estimation methods is that observations can be collected in a short period of time (1–2 h of field‐work per plot).     

数字乳房X片中的伪彩色增强应用

利用数字图像处理中伪彩色理论,讨论了灰度一彩色变换函数,并用合适的线性变换函数对数字乳房X片进行处理。处理后的图像与原数字灰度图像相比较,可分辨性明显提高。可以利用这种变换,辅助医疗诊断,从而降低乳房癌的漏诊和误诊率。经验证,经过伪彩色增强后的数字乳房X片病灶区域的可分辨性明显优于原数字图像,有较高的临床价值。     

Field-based remote sensing of intertidal epilithic chlorophyll: Techniques using specialized and conventional digital cameras

Information on the amount of chlorophyll (as an index of micro-algal abundance) on rock surfaces is essential for many reasons, including studies of grazing and its role in structuring intertidal assemblages. Many methods are destructive, error-prone and expensive. Remote sensing allows non-destructive, inexpensive and quantitative measurements to be made of chlorophyll in situ. One specialized and two inexpensive commercially-available digital cameras (Fuji IS1 and Sony DSC-V1) are evaluated for estimating amounts of chlorophyll on rock surfaces. To compare measurements from different images, they are calibrated, using reflectance standards of different brightness. To test the calibration, images of a natural rock platform were acquired under variable solar illumination and camera-exposure times. Analyses before and after calibration showed that the method was effective.A range of quantities of micro-algae was grown on sandstone disks in an aquarium over different intervals of time. Red and NIR reflectance images were obtained from the cores. For each core, the amount of chlorophyll was determined spectrophotometrically and estimated from the images using the Ratio Vegetation Index (RVI) and Normalised Difference Vegetation Index (NDVI). Each of these was linearly related to the measured chlorophyll, with r² ranging from 0.78 to 0.9. These techniques can be applied to the study of intertidal and freshwater benthic habitats.     

Systems of representation: Towards the integration of digital photography into the practice of creating visual images

This paper aims to set the foundations for an integration of digital photography into the broader framework of visual representation. The current climate seems to be marked by a preoccupation with contrasting the digital with the analog image. An alternative cross‐cultural approach is proposed, employing “systems of representation” characterized by the wide range of strategies for communicating through the visual image that can be found in the anthropology of art. These take into account the optical principles of depiction and their cultural determinants. The paper aims to place the practice of the digital generation and manipulation of photographs at a point of convergence with a variety of other means of transcribing the three‐dimensional world onto a two‐dimensional flat surface.