Severe mortality in wild Atlantic salmon Salmo salar due to proliferative kidney disease (PKD) caused by Tetracapsuloides bryosalmonae (myxozoa)

Extensive mortality in Atlantic salmon fry was reported in the River Aelva from 2002 to 2004. Dead fish were collected in late summer 2006, and live fish were sampled by electrofishing in September the same year. At autopsy and in histological sections, the fish kidneys were found to be pale and considerably enlarged. Proliferative lesions with characteristic PKX cells were seen in a majority of the fish. DNA from kidney samples of diseased fish was subjected to PCR and sequencing, and the amplified sequences matched those of Tetracapsuloides bryosalmonae. We concluded that this myxozoan transmitted from bryozoans was the main cause of the observed mortality in salmon fry in 2006. Results from quantitative electrofishing in 2005 and 2006, combined with the observed fry mortality from 2002 to 2004, show that the smolt production in the river is severely reduced and that T. bryosalmonae is the most likely explanation for this decline. The present study is the first to report a considerable negative population effect in wild Atlantic salmon due to proliferative kidney disease (PKD). It also represents the northernmost PKD outbreak in wild fish. The river is regulated for hydroelectric power purposes, causing reduced water flow and elevated summer temperatures, and the present PKD outbreak may serve as an example of increased disease vulnerability of northern fish populations in a warmer climate.     

Notes on the behaviour of lumpfish in sea pens with and without Atlantic salmon present

The behaviour of lumpfish, Cyclopterus lumpus L., in sea pens, with and without Atlantic salmon, Salmo salar L., present, was assessed by underwater camera technology. Behaviour was classified by recording the principal activity of individual fish for 30-s intervals. The majority of daylight time was spent actively foraging for food. Antagonistic behaviour between Atlantic salmon and lumpfish was not observed during the whole experimental period and no mortality was seen in either species. Cleaning behaviour, but at low frequency, was observed as lumpfish cleaned sea lice off Atlantic salmon. Significantly lower sea lice infection levels were seen on Atlantic salmon when reared together with lumpfish compared to the control group without lumpfish. Feeding behaviour can be classified as strongly opportunistic.     

The physiological effects of salmon lice infection on post-smolt of Atlantic salmon

The physiological effects of salmon lice infections on post-smolt of Atlantic salmon were examined by experimentally infecting hatchery reared post-smolts with infective copepodids. Even at high infection intensities, ranging from 30–250 lice per fish, early chalimus stages did not have severe, physiological effects on the fish. There was a sudden increase in fish mortality after the appearance of preadult I stages. Infected fish were then suffering due to lesions and osmoregulatory failure. Plasma chloride level increased significantly and total protein, albumin and haematocrit decreased significantly in infected compared to uninfected fish. All infected fish became moribund before adult lice appeared. Infection intensities above 30 salmon lice larvae per fish thus appear to cause death of Atlantic salmon post-smolt soon after the lice reach their pre-adult stage.     

Salmon lice increase the age of returning Atlantic salmon

The global increase in the production of domestic farmed fish in open net pens has created concerns about the resilience of wild populations owing to shifts in host–parasite systems in coastal ecosystems. However, little is known about the effects of increased parasite abundance on life-history traits in wild fish populations. Here, we report the results of two separate studies in which 379 779 hatchery-reared Atlantic salmon smolts were treated (or not) against salmon lice, marked and released. Adults were later recaptured, and we specifically tested whether the age distribution of the returning spawners was affected by the treatment. The estimates of parasite-induced mortality were 31.9% and 0.6% in the River Vosso and River Dale stock experiments, respectively. Age of returning salmon was on average higher in treated versus untreated fish. The percentages of fish returning after one winter at sea were 37.5% and 29.9% for the treated and untreated groups, respectively. We conclude that salmon lice increase the age of returning salmon, either by affecting their age at maturity or by disproportionately increasing mortality in fish that mature early.     

Ecological model of interactions between escaped and wild Atlantic salmon Salmo salar

Atlantic salmon in Maine were once abundant but have become depleted, and are listed as endangered under the federal Endangered Species Act. Historically, salmon numbers in Maine may have been as high as 100 000 adults, but habitat loss, pollution and overfishing have contributed to the decline of the species. In 2000, only 110 adults returned to spawn in Maine rivers. Maine produces c. 15 000 metric tons/year of aquacultured Atlantic salmon from a total of nearly 600 coastal net pens. Escapees from these pens may interact with the wild salmon. The dynamics of salmon populations under such conditions are poorly understood. In order to illuminate the role aquaculture may play in such a system, we have developed a model for simulating population trajectories for both wild salmon and competing populations derived from aquaculture escapes. The model simulates a small population of wild salmon based in a stream/estuary system, into which an aquaculture facility is losing fish to escapes. Biological parameters in the model were estimated as much as possible from data in the USFWS report on Maine salmon. We used the model to investigate the consequences of a variety of ecological interactions between the wild and cultured fish including competitive, genetic and disease effects. Initial results indicate that many of these effects allow the aquaculture‐derived population to supplant the wild fish, but that wild populations may still persist under some conditions.     

Why do some fish do it younger than others? learning from experiments

Atlantic salmon in Maine were once abundant but have become depleted, and are listed as endangered under the federal Endangered Species Act. Historically, salmon numbers in Maine may have been as high as 100 000 adults, but habitat loss, pollution and overfishing have contributed to the decline of the species. In 2000, only 110 adults returned to spawn in Maine rivers. Maine produces c. 15 000 metric tons/year of aquacultured Atlantic salmon from a total of nearly 600 coastal net pens. Escapees from these pens may interact with the wild salmon. The dynamics of salmon populations under such conditions are poorly understood. In order to illuminate the role aquaculture may play in such a system, we have developed a model for simulating population trajectories for both wild salmon and competing populations derived from aquaculture escapes. The model simulates a small population of wild salmon based in a stream/estuary system, into which an aquaculture facility is losing fish to escapes. Biological parameters in the model were estimated as much as possible from data in the USFWS report on Maine salmon. We used the model to investigate the consequences of a variety of ecological interactions between the wild and cultured fish including competitive, genetic and disease effects. Initial results indicate that many of these effects allow the aquaculture‐derived population to supplant the wild fish, but that wild populations may still persist under some conditions.     

Prevalence of larval Anisakis simplex in pen-reared and wild-caught salmon (Salmonidae) from Puget Sound, Washington

The abundance of parasites of public health significance in pen-reared salmon and wild-caught salmon was compared. Two hundred eighty-seven salmon from Puget Sound, Washington, were examined for third-stage larvae of Anisakis simplex. Of these fish, 237 Atlantic salmon (Salmo salar), coho salmon (Oncorhynchus kisutch) and chinook salmon (O. tshawytscha) were reared in commercial salmon pens and 50 sockeye salmon (O. nerka) were caught during their spawning migration. All wild-caught salmon were found to be infected with larval A. simplex; conversely, all pen-reared fishes lacked such infections. Edible musculature of wild salmon were infected with 581 (87%) nematode larvae. Of other salmon parasites known to infect humans, one Diphyllobothrium sp. plerocercoid was collected from each of three of the 50 wild-caught salmon. The study showed that farmed salmon may increase the margin of safety for consumers of raw seafood.     

Role of habitat in mediating mortality during the post-settlement transition phase of temperate marine fishes

The transition phase describes a distinct post-settlement stage associated with the recruitment to benthic habitats by pelagic life stages. The habitat shift is often accompanied by feeding shifts and metamorphosis from larval to juvenile phases. Density-dependent settlement, growth and mortality are often the major factors controlling recruitment success of this phase. Habitat use also becomes more pronounced after settlement. The role of habitat-mediated post-settlement mortality is elucidated by focusing on the early life history of Atlantic cod ( Gadus morhua ) and cunner ( Tautogolabrus adspersus ) in the north-west Atlantic. In these species, settlement can occur over all bottom types, but habitat-specific differences in post-settlement mortality rates combined with size and priority at settlement effects on growth and survival determine recruitment and eventual year-class strength. These results and those from other temperate marine fish species along with work on tropical reef species emphasize the generality of habitat-based density-dependent mortality during the transition phase and its potential for population regulation. These results have implications for fisheries management and can be used to outline a procedure to assist managers in identifying and managing essential transitional habitats including the potential role of marine protected areas in habitat conservation.     

Population biology of the myctophid fish Gymnoscopelus nicholsi (Gillbert, 1911) from the western South Atlantic

Thirty-three collections of Gymnoscopelus nicholsi were made between 1976 and 1981 in the South Atlantic using both krill and bottom trawls. In the Antarctic waters the main part of the stock consisted of adult fish 3–7 years old, characterized by a benthopelagic mode of life. Fish of year-class I were observed only in the vicinity of South Georgia, South Sandwich Islands and the Scotia Sea; year-class II individuals were absent from Antarctic samples. In the notal zone of the western South Atlantic, fish aged 1–5 years were found. The existence of only one population in the region is a possible explanation of these findings: this population is divided into a pelagic stock of juveniles and sub-adults which occur in the offshore waters of the western South Atlantic and benthopelagic stocks of adults distributed over the slope regions off Argentina, South Georgia and Antarctic archipelagos.
The computed values of K (von Bertalanffy growth) were 0.48, 0.41 and estimated total annual instantaneous mortality rates (Z) were 0.45, 0.67, and 0.70 for South Georgia, South Shetlands and notal zone of western South Atlantic stocks, respectively.     

Effect of mink, Mustela vison Schreber, predation on cohorts of juvenile Atlantic salmon, Salmo salar L., and brown trout, S. trutta L., in three small streams

Two cohorts of Atlantic salmon parr and one of brown trout were studied in periods with and without the presence of mink, Mustela vison . In all localities a marked increase in mortality rate was observed during periods when mink were present. Mink were observed catching salmon parr, and approximately 10% of the parr had bite marks, especially on the tail fins. In the smallest stream with brown trout, the mortality rate was 0.80 during a few days with mink present; remnants of trout were found along the stream. The present study suggests that mink predation may be a major cause of mortality of salmonids in small streams. The results indicate that predation efficiency may vary with characteristics of the habitat, especially stream width and discharge, and fish density.     

Questionnaire-based risk assessment for amoebic gill disease (AGD) and evaluation of freshwater bathing efficacy of reared Atlantic salmon Salmo salar

Factors causing amoebic gill disease (AGD), the main disease affecting the salmonid industry in Tasmania, are largely unknown. Managers of 57 sites, from 4 countries, in both the Southern and Northern Hemisphere were questioned regarding the 2000 smolt year-class Atlantic salmon. Questions included site characteristics, fish population characteristics, husbandry and management programs, through to freshwater bathing characteristics. Possible risk factors for AGD outbreaks that were identified in this study using farm managers' opinions were mixed sex stocks (Tasmania), downstream positioning from other salmonid farming sites (pooled), tidal sites (Tasmania), depth of site (pooled), rate of salinity change in halocline and depth of halocline (pooled, Tasmania), phytoplankton blooms (pooled, Tasmania), antifouling paints (Tasmania, overseas) and automated feeding (pooled, overseas). The information from farm managers suggested that freshwater bathing is less effective with smaller bathing cages and lower levels of saturated oxygen in the bathing water. Risk factors could not always be determined due to the complex interactions between the biological and chemical environment, host and pathogenic factors, coupled with low sample numbers.     

The production of juvenile Atlantic salmon, Salmo salar in the upper Wye, Wales

The production of juvenile Atlantic salmon ( Sulmo salur L.) was investigated in 16 study sites in the upper Wye catchment during the period February 1975 to November 1976. The population structure was characterised by large numbers of 0+ fish whose abundance decreased with respect to time so that the numbers of each of the older year-classes was a function of the year-class strength of the original fry. The range of parr densities was similar to that recorded for other rivers: the estimates of 2+ smolts did not exceed about 0.04 m⁻². Production ranged from 0.3 to 11.0 gm⁻² a^−l; Of and 1+ fish contributed over 72% and 3+ fish less than 1 % of the total annug production. The relationship between production P (gm⁻² a⁻¹) and mean biomass B (gm⁻²) for all yeatclasses considered separately and in combination can be expressed by the relationship P=a^b . The values for a vary with age-composition and season but the values for b are not significantly different. Differences in growth rate of salmon between sites are small and differences in production result principally from differences in standing crop (biomass density). In most cases low values for salmon production can be attributed to poor spawning.     

Infection of Atlantic salmon, Salmo salar L., by Gyrodactylus salaris, Malmberg 1957, in the River Lakselva, Misvær in northern Norway

Gyrodacrylus salaris was most probably introduced to the River Lakselva in 1975 through stocking of Atlantic salmon from an infected hatchery. The parasite population grew rapidly, and the parasite spread throughout the entire watercourse during the summer of 1976. This epidemic situation led to mortality among the young Atlantic salmon, and the density of salmon parr was heavily reduced from 1976 to 1977. The density of salmon parr has remained close to zero since then, while there are no apparent trends toward decrease or increase in the density of brown trout. In spite of the reduced density of young salmon, a new epidemic has developed each year among the few young 0+ and 1+ Atlantic salmon present in the river. Results from successive sampling during the summer of 1987, 1988 and 1989 indicate that most of the presmolt salmon are attacked during their first summer or autumn of life. The infection develops into an epidemic during the first autumn, winter or the next summer. The build-up of the parasite burden on the fish leads in turn to mortality. Norwegian Atlantic salmon probably have no resistance against G. salaris, since the parasite has recently been introduced to Norwegian rivers.     

Relationship between temperature and Ceratomyxa shasta -induced mortality in Klamath River salmonids

Water temperature influences almost every biological and physiological process of salmon, including disease resistance. In the Klamath River (California), current thermal conditions are considered sub-optimal for juvenile salmon. In addition to borderline temperatures, these fish must contend with the myxozoan parasite Ceratomyxa shasta , a significant cause of juvenile salmonid mortality in this system. This paper presents 2 studies, conducted from 2007 to 2010, that examine thermal effects on C. shasta -induced mortality in native Klamath River Chinook ( Oncorhynchus tshawytscha ) and coho ( Oncorhynchus kisutch ) salmon. In each study, fish were exposed to C. shasta in the Klamath River for 72 hr and then reared in the laboratory under temperature-controlled conditions. The first study analyzed data collected from a multi-year monitoring project to asses the influence of elevated temperatures on parasite-induced mortality during the spring/summer migration period. The second study compared disease progression in both species at 4 temperatures (13, 15, 18, and 21 C) representative of spring/summer migration conditions. Both studies demonstrated that elevated water temperatures consistently resulted in higher mortality and faster mean days to death. However, analysis of data from the multi-year monitoring showed that the magnitude of this effect varied among years and was more closely associated with parasite density than with temperature. Also, there was a difference in the timing of peak mortality between species; Chinook incurred high mortalities in 2008 and 2009, whereas coho was greatest in 2007 and 2008. As neither temperature nor parasite density can be easily manipulated, management strategies should focus on disrupting the overlap of this parasite and its obligate hosts to improve emigration success and survival of juvenile salmon in the Klamath River.     

Modeling Parasite Dynamics on Farmed Salmon for Precautionary Conservation Management of Wild Salmon

Conservation management of wild fish may include fish health management in sympatric populations of domesticated fish in aquaculture. We developed a mathematical model for the population dynamics of parasitic sea lice (Lepeophtheirus salmonis) on domesticated populations of Atlantic salmon (Salmo salar) in the Broughton Archipelago region of British Columbia. The model was fit to a seven-year dataset of monthly sea louse counts on farms in the area to estimate population growth rates in relation to abiotic factors (temperature and salinity), local host density (measured as cohort surface area), and the use of a parasiticide, emamectin benzoate, on farms. We then used the model to evaluate management scenarios in relation to policy guidelines that seek to keep motile louse abundance below an average three per farmed salmon during the March–June juvenile wild Pacific salmon (Oncorhynchus spp.) migration. Abiotic factors mediated the duration of effectiveness of parasiticide treatments, and results suggest treatment of farmed salmon conducted in January or early February minimized average louse abundance per farmed salmon during the juvenile wild salmon migration. Adapting the management of parasites on farmed salmon according to migrations of wild salmon may therefore provide a precautionary approach to conserving wild salmon populations in salmon farming regions.     

Maturation of male age-0 Atlantic salmon following a massive, localized flood

Maturation of male age-0 Atlantic salmon Salmo salar parr in New England, U.S.A. streams is rare (˜5%), but age-0 parr maturation was high (74%) by autumn in the Sawmill River following a massive, localized flood. Maturation was low in two other study streams (3, 7%) in the same year as the flood, and in the Sawmill River (6%) and the other rivers (5%) in the subsequent year, suggesting that high maturation rates were related to the flood. The high age-0 maturation rates appear to have been the result of greater growth opportunity following the flood. Masses of fish in October were two-fold greater in the Sawmill River (13·2 g) than in the other rivers (6·5, 6·9 g). Mechanisms contributing to the fast growth may include community reorganization following the flood and water temperature differences among rivers. The flood caused an age-0 year-class failure for brook trout Salvelinus fontinalis and brown trout Salmo trutta and a large reduction (69%) in the number of salmon compared to the other rivers, possibly reducing competition or agonistic interactions among remaining fish. Average water temperatures were slightly warmer in the Sawmill River (17·0° C) than in the other rivers (15·5, 14·9° C). By influencing community structure and growth of remaining fish, it appears that a strong environmental disturbance can also alter the direction and timing of life histories in Atlantic salmon.     

Predators reverse the direction of density dependence for juvenile salmon mortality

The effect of predators on prey populations depends on how predator-caused mortality changes with prey population density. Predators can enforce density-dependent prey mortality and contribute to population stability, but only if they have a positive numerical or behavioral response to increased prey density. Otherwise, predator saturation can result in inversely density-dependent mortality, destabilizing prey populations and increasing extinction risk. Juvenile salmon and trout provide some of the clearest empirical examples of density-dependent mortality in animal populations. However, although juvenile salmon are very vulnerable to predators, the demographic effects of predators on juvenile salmon are unknown. We tested the interactive effects of predators and population density on the mortality of juvenile Atlantic salmon (Salmo salar) using controlled releases of salmon in natural streams. We introduced newly hatched juvenile salmon at three population density treatments in six study streams, half of which contained slimy sculpin (Cottus cognatus), a common generalist predator (18 release sites in total, repeated over two summers). Sculpin reversed the direction of density dependence for juvenile salmon mortality. Salmon mortality was density dependent in streams with no sculpin, but inversely density dependent in streams where sculpin were abundant. Such predator-mediated inverse density dependence is especially problematic for prey populations suppressed by other factors, thereby presenting a fundamental challenge to persistence of rare populations and restoration of extirpated populations.     

All-cause and cause-specific mortality during and following incarceration in Brazil: A retrospective cohort study

BackgroundMortality during and after incarceration is poorly understood in low- and middle-income countries (LMICs). The need to address this knowledge gap is especially urgent in South America, which has the fastest growing prison population in the world. In Brazil, insufficient data have precluded our understanding of all-cause and cause-specific mortality during and after incarceration.Methods and findingsWe linked incarceration and mortality databases for the Brazilian state of Mato Grosso do Sul to obtain a retrospective cohort of 114,751 individuals with recent incarceration. Between January 1, 2009 and December 31, 2018, we identified 3,127 deaths of individuals with recent incarceration (705 in detention and 2,422 following release). We analyzed age-standardized, all-cause, and cause-specific mortality rates among individuals detained in different facility types and following release, compared to non-incarcerated residents. We additionally modeled mortality rates over time during and after incarceration for all causes of death, violence, or suicide. Deaths in custody were 2.2 times the number reported by the national prison administration (n = 317). Incarcerated men and boys experienced elevated mortality, compared with the non-incarcerated population, due to increased risk of death from violence, suicide, and communicable diseases, with the highest standardized incidence rate ratio (IRR) in semi-open prisons (2.4; 95% confidence interval [CI]: 2.0 to 2.8), police stations (3.1; 95% CI: 2.5 to 3.9), and youth detention (8.1; 95% CI: 5.9 to 10.8). Incarcerated women experienced increased mortality from suicide (IRR = 6.0, 95% CI: 1.2 to 17.7) and communicable diseases (IRR = 2.5, 95% CI: 1.1 to 5.0). Following release from prison, mortality was markedly elevated for men (IRR = 3.0; 95% CI: 2.8 to 3.1) and women (IRR = 2.4; 95% CI: 2.1 to 2.9). The risk of violent death and suicide was highest immediately post-release and declined over time; however, all-cause mortality remained elevated 8 years post-release. The limitations of this study include inability to establish causality, uncertain reliability of data during incarceration, and underestimation of mortality rates due to imperfect database linkage.ConclusionsIncarcerated individuals in Brazil experienced increased mortality from violence, suicide, and communicable diseases. Mortality was heightened following release for all leading causes of death, with particularly high risk of early violent death and elevated all-cause mortality up to 8 years post-release. These disparities may have been underrecognized in Brazil due to underreporting and insufficient data.

In a retrospective cohort study, Yiran E Liu and colleagues investigate all-cause and cause-specific mortality during and following incarceration in Brazil.     

Genetic variation in mortality of chinook salmon during a bloom of the marine alga Heterosigma akashiwo

Mortality in a netpen-reared population of 3-year-old chinook salmon Oncorhynchus tshawytscha during an extensive 1997 bloom of the alga Heterosigma akashiwo in Puget Sound, Washington, was low (7·2%), and corresponded to a reduction in variance effective population size of 9·4%. Under a liability threshold model, the heritability of mortality (± S.E.), based on paternal half-sibs, was estimated at 0·15 ± 0·04. No significant genetic variation was detected for date of death. Despite the low overall mortality, the consequences for variation in family size underscore the importance of maximizing genetic variation in cultured fish populations later released to the wild as a precaution against mortality and losses of genetic variation over the life cycle. The pattern of family variation in response to this algal bloom provides evidence for potentially selective mortality of anadromous salmonids in the marine environment during natural perturbations.     

Infection by Parvicapsula sp. (Myxozoa) is associated with mortality in sea-caged Atlantic salmon Salmo salar in northern Norway

In March 2002, 3 seawater farms in northern Norway experienced high mortality among Atlantic salmon postsmolts. A myxosporean parasite assigned to the genus Parvicapsula was detected in the pseudobranchs of diseased fish, and extensive destruction of this organ was observed. The parasite was also found in the gills, liver and kidney of some fish. Based on host species, spore morphology, and the unusual site preference of the parasite, it is likely that it represents a hitherto undescribed species. The diseased fish had been transferred to seawater in September 2001, and it is believed that the infection took place shortly after exposure to seawater. The source of infection is unknown.