Le risorse genetiche vegetali. I. Principi,realtà, problemi

Abstract

Plant genetic resources. I. The problem of the conservation of plant genetic resources emerges from the examination of the consequences of the genetic erosion and of the destruction of genetic variability, which provoke decline and disappearance of plant species, of agricultural value too.

Information are given on species and primitive or local varieties desappeared or threatened by destruction, on the emergency situation already existing in various areas, including also centres of origin and diversification, and on the risks of a plant breeding work manipulating a reduced genetic basis.

Thus, it is crucial to collect and maintain an abundant germplasm of the main crops, as well as of those species of minor agricultural importance. It is wise also to pay attention to plant species of potential value as new food crops or as sources for industrial pharmaceutical or pesticide products or other products with specific chemical properties.

Finally, the author underlines the urgent need, for the future progress of agriculture and for the benefit of the mankind, to safeguard plant genetic resources, which must be considered as essential part of the problem of the conservation of the nature and of its resources.     

Overexploitation and anthropogenic disturbances threaten the genetic diversity of an economically important neotropical palm

The Caatinga biome is one of the largest areas of the South American seasonally dry tropical forest that has been severely affected by unsustainable natural resource use. Furthermore, the biome has been identified as an ecologically sensitive region that is particularly susceptible to climate changes. One of the most economically important native palm tree for traditional communities from the semi-arid Caatinga is the carnauba palm, Copernicia prunifera, which offers diverse natural resources, yet its natural populations suffer intense exploitation. To inform conservation and population management strategies, we sought to determine if remaining natural populations of this species in an intensively exploited area in Northeast Brazil displayed evidence of negative genetic impacts because of exploitation and how this might interact with expected environmental changes. Mantel’s test revealed a positive and significant correlation between geographic and genetic distances, suggesting natural populations are structured by isolation by distance, while also experiencing genetic barriers as identified through Monmonier's algorithm. The studied populations showed evidence of genetic bottlenecks, while future climate scenarios suggest that potentially suitable habitats for C. prunifera within its native range will be reduced. Significant genetic differentiation among populations resulted in three distinct genetic groups which are consistent with ecological niche modelling. In addition to the need for in situ conservation of C. prunifera populations to minimize the loss of important alleles, the creation of germplasm banks for ex situ conservation and strategies for developing planted productive forests are urgently required to maintain natural populations and ensure sustainability resources for traditional communities.

     

Integrating approaches towards the conservation of forest genetic resources: a case study of Araucaria angustifolia

In the past years the conservation of forest genetic resources has been widely recognized because of the risk of adverse effects associated with global changes in the environment. Since little effort has been made towards conservation of these resources, the assessment and the integration of information and knowledge so far generated are valuable tools in order to promote their conservation. In the present work the Brazilian conifer Araucaria angustifolia was used as a case study, integrating information, published between 1980 and 2007, about genetics, biotechnology, palaeobotany, and archeology. These studies were interpreted towards the conservation needs and strategies of the species germplasm. The main conclusions for the conservation of A. angustifolia genetic resources are: (1) despite the reduction of genetic diversity by unsustainable forest exploitation, the genetic system of A. angustifolia seems to be efficient to protect this species against rapid losses of its genetic diversity; (2) conservation measures starting now may be efficient, since the genetic structures of existing populations is more largely influenced by the past evolutionary process than by human disturbance occurred in the last century; (3) there are opportunities to save the genetic resources of the species, if simple measures are taken to safeguard the continued existence of the few remaining araucaria forests. Emerged as a general conclusion that the use of sound scientific arguments supported by different areas of the science could be a very powerful instrument in persuading decision-makers, also by governments, taking into account forest genetic resources as a primary issue for the future.     

Le risorse genetiche vegetali. II. Interventi per la loro salvaguardia

Abstract

Plant genetic resources. II. The Author describes the actions to be undertaken for the conservation of the plant genetic resources, mainly in relation to the following methods: a) natural mass reservoirs where plant material may continue its processes of evolution, b) collections managed in such way that the genetic integrity of the original population is not eroded. Criteria, methodologies, studies, problems solved or to be solved are considered in the paper. Great attention is deserved to tactics of exploration and collection, to storage conditions, to seed physiology and life span of seeds, to information storage and documentation.     

Genetic diversity and reproductive ecology of the sage-leaved rockrose,Cistus salviifolius L., in the Swiss Alps

Range marginal populations are often perceived to have lower conservation value compared to those in the core area. The allocation of resources to maintain peripheral populations is therefore often questioned. The sage-leaved rockrose (Cistus salviifolius L.) is a self-incompatible and obligate seeder widely distributed in the Mediterranean area but rare and patchily distributed in Switzerland at its range margin on the southern slopes of the Alps. Here, we combined analysis of genetic diversity with pollinator surveys and field studies of reproductive ecology to compare peripheral Cistus populations in the Alps with range central populations in the Mediterranean. Our results showed no differences in genetic diversity between peripheral and central populations and between fragmented and connected ones at its range margin in the Alps. Although the fragmented populations were visited by more abundant and species richer pollinators (bees and wasps), they showed lower number of seeds and higher self-compatibility compared to the connected ones, which excludes the pollination limitation hypothesis. Overall, our study highlights that peripheral populations of C. salviifolius in the Alps are likely to contribute to maintain genetic diversity, while showing variation in reproductive ecology, and are therefore important for the conservation of this species.

     

Genetic diversity and conservation and utilization of plant genetic resources

Biodiversity refers to variation within the living world, while genetic diversity represents the heritable variation within and between populations of organisms, and in the context of this paper, among plant species. This pool of genetic variation within an inter-mating population is the basis for selection as well as for plant improvement. Thus, conservation of this plant genetic diversity is essential for present and future human well-being. During recent years, there has been increasing awareness of the importance of adopting a holistic view of biodiversity, including agricultural biodiversity, conservation for sustainable utilization and development. These principles have been enshrined in the Convention on Biological Diversity and the Global Plan of Action of the Food and Agriculture Organization of the United Nations. The emphasis is now to understand the distribution and extent of genetic diversity available to humans in plant species, so that the genetic diversity can be safely conserved and efficiently used. It is generally recognized that plant genetic diversity changes in time and space. The extent and distribution of genetic diversity in a plant species depends on its evolution and breeding system, ecological and geographical factors, past bottlenecks, and often by many human factors. Much of the large amount of diversity of a species may be found within individual populations, or partitioned among a number of different populations.A better understanding of genetic diversity and its distribution is essential for its conservation and use. It will help us in determining what to conserve as well as where to conserve, and will improve our understanding of the taxonomy and origin and evolution of plant species of interest. Knowledge of both these topics is essential for collecting and use of any plant species and its wild relatives. In order to mange conserved germplasm better, there is also a need to understand the genetic diversity that is present in collections. This will help us to rationalize collections and develop and adopt better protocols for regeneration of germplasm seed. Through improved characterization and development of core collections based on genetic diversity information, it will be possible to exploit the available resources in more valuable ways.     

The role of zoological parks in biodiversity conservation in the Gulf of Guinea islands

Modern zoological institutions are devoting more of their resources to research, education and conservation than they have in the past. Many zoos recently have become increasingly involved in external or field (in situ) projects, with a view to conserving species and their habitats where they occur naturally. An opportunity to practice in situ conservation exists on Bioko, the largest and biologically the most diverse of the Gulf of Guinea islands. Although urgent political and economic problems confront Equatorial Guinea, of which Bioko is part, external aid will be needed if the infrastructure is to be developed to protect and maintain two important nature reserves on the island. Several initiatives are suggested for the involvement of zoos in this process.     

Taxonomic complexity,population genetics,and plant conservation in Scotland

Summary

Groups of plants that are undergoing active diversification often do not fall into neat and tidy taxonomies. In such groups it can sometimes be very difficult to establish what does, and what does not, constitute a species. This presents problems for species-based conservation programmes that are based around prioritised species-lists (e.g. the UK Biodiversity Action Plans; BAPs), particularly as the inclusion or exclusion of taxa on these lists largely determines the allocation of conservation resources. This is an important issue as almost half of the BAP priority higher plant species for which Scotland has prime responsibility are taxonomically controversial.

Recent research using population genetic approaches to tackle some taxonomically complex plant groups has enhanced our understanding of their biology. Such approaches provide objective and independent assessments of whether a given entity is distinct or not. This information can then be used to contribute towards the decision making process of which taxa to prioritise for conservation, and address specific questions regarding BAP listed species. In the long term, however, a broader issue needs tackling. Actively evolving groups often contain a series of localised lineages, as well as complex populations that exhibit atypical levels of morphological diversity. These types of diversity do not fit well into a ‘standard’ species-based conservation system. In most cases protection will best be supplied by designated site protection or wider countryside habitat schemes. Where additional protection is need, a conservation policy is required that accepts the diversity in these actively evolving groups for what it is, rather than trying to squeeze it into conservation legislation derived for taxa whose delimitation is routine.     

Genetic population structure and demography of an apex predator,the tiger shark Galeocerdo cuvier

Population genetics has been increasingly applied to study large sharks over the last decade. Whilst large shark species are often difficult to study with direct methods, improved knowledge is needed for both population management and conservation, especially for species vulnerable to anthropogenic and climatic impacts. The tiger shark, Galeocerdo cuvier, is an apex predator known to play important direct and indirect roles in tropical and subtropical marine ecosystems. While the global and Indo‐West Pacific population genetic structure of this species has recently been investigated, questions remain over population structure and demographic history within the western Indian (WIO) and within the western Pacific Oceans (WPO). To address the knowledge gap in tiger shark regional population structures, the genetic diversity of 286 individuals sampled in seven localities was investigated using 27 microsatellite loci and three mitochondrial genes (CR, COI, and cytb). A weak genetic differentiation was observed between the WIO and the WPO, suggesting high genetic connectivity. This result agrees with previous studies and highlights the importance of the pelagic behavior of this species to ensure gene flow. Using approximate Bayesian computation to couple information from both nuclear and mitochondrial markers, evidence of a recent bottleneck in the Holocene (2,000–3,000 years ago) was found, which is the most probable cause for the low genetic diversity observed. A contemporary effective population size as low as 111 [43,369] was estimated during the bottleneck. Together, these results indicate low genetic diversity that may reflect a vulnerable population sensitive to regional pressures. Conservation measures are thus needed to protect a species that is classified as Near Threatened.     

Reflections on the Conservation and Sustainable Use of Genetic Resources in the Deep Seabed Beyond the Limits of National Jurisdiction

Attention is increasingly being given to genetic resources in the deep seabed beyond the limits of national jurisdiction owing to their considerable potential scientific and economic value. At the same time, there are concerns that the increased demand for these genetic resources may result in their unsustainable collection or even in the extinction of species in the deep seabed. At present there is no specific legal framework governing these resources in international law. Thus, this article explores the relevant rules of international law applicable to the conservation and sustainable use of genetic resources in the deep seabed.     

Comparing species and evolutionary diversity metrics to inform conservation

Phylogenetic diversity (PD) is an important measure for identifying areas of conservation. Phylogenetic diversity is a robust biodiversity metric because it accounts for the relationships among species, and not just the number of species. For this reason, it is an essential element for conservation planning. Unfortunately, PD metrics are not used by many for conservation planning. In the case of Colombia, which is rich in crop and wild plant biodiversity, lacks information on genetic resources of Crop Wild Relatives (CWR). Due to deforestation and agriculture expansion, the habitat, where these crop wild relatives grow, is being reduced at an alarming rate and could be destroyed altogether. This study focuses on crop wild relatives in Colombia, comparing species diversity versus PD-based metrics to show the advantages of using evolutionary information for conservation planning. We identified new areas with high PD and endemism among CWR diversity which are important to establishing comprehensive conservation strategies.     

Fragmentation genetics in tropical ecosystems: from fragmentation genetics to fragmentation genomics

Tropical regions are experiencing unprecedented economic and population growth. This goes hand in hand with increase habitat fragmentation of tropical ecosystems. Understanding the genetic consequences of these spatial and temporal changes across landscapes is critical to conservation of the vast majority of global biodiversity. This virtual issue of Conservation Genetics, presents six empirical and one review paper showcasing fascinating and important findings with regard to how habitat fragmentation impacts on genetic diversity in rare or endangered tropical species. The message from these papers is clear, fragmentation has a number of serious genetic consequences, which can contribute to undermining the viability of species in fragmented landscapes. Conservation genetics provides a powerful tool to inform both conservation and management of species and genetic resources. But, careful consideration is needed to ensure studies apply appropriate sampling designs and genetic analysis to better test hypothesis. Next generation genomics offers great opportunities to provide even more answers and greater resolution of the consequences for adaptive genetic variation, to ensure future tropical landscapes are resilient.     

Genetic variation in mahoganies: its importance,capture and utilization

Mahoganies (Swietenia spp.; Meliaceae) are amongst the most economically important tropical hardwoods, and yet little information exists concerning their patterns of genetic variation. The characterization of this variation is essential for defining more accurately the conservation status of mahogany populations, and for their economic utilization. The loss of genetic variation through deforestation may be critical for these species, which are highly susceptible to pest attacks when grown in plantations. This paper assesses the current state of knowledge concerning the extent of genetic variation in mahoganies, and highlights its potential importance. It is suggested that any conservation strategy developed for mahoganies should include a genetic selection and improvement programme as well as the protection of natural stands in situ. Techniques by which particular genotypes may be captured for ex situ conservation are briefly described.A component of the Edinburgh Centre for Tropical Forests.     

Evolutionary Conservation of Bacterial Essential Metabolic Genes across All Bacterial Culture Media

One of the basic postulates of molecular evolution is that functionally important genes should evolve slower than genes of lesser significance. Essential genes, whose knockout leads to a lethal phenotype are considered of high functional importance, yet whether they are truly more conserved than nonessential genes has been the topic of much debate, fuelled by a host of contradictory findings. Here we conduct the first large-scale study utilizing genome-scale metabolic modeling and spanning many bacterial species, which aims to answer this question. Using the novel Media Variation Analysis, we examine the range of conservation of essential vs. nonessential metabolic genes in a given species across all possible media. We are thus able to obtain for the first time, exact upper and lower bounds on the levels of differential conservation of essential genes for each of the species studied. The results show that bacteria do exhibit an overall tendency for differential conservation of their essential genes vs. their non-essential ones, yet this tendency is highly variable across species. We show that the model bacterium E. coli K12 may or may not exhibit differential conservation of essential genes depending on its growth medium, shedding light on previous experimental studies showing opposite trends.     

植物保护遗传学研究进展

保护遗传学是过用遗传学的原理和研究手段,以生物多样性尤其是遗传多样性的研究和保护为核心的一门新兴学科,近几十年来,遗传学研究在生物多样性保护的理论和实践中发挥着越来越重要的作用。本文简要回顾了保护遗传学的发展历史,研究方向和涉及的概念,着重介绍了植物保护遗传学研究所取得的一些进展,包括植物系统发育重建和保护单元的确定,遗传多样性与物种和群体适应性之间的关系,群体遗传结构与保护策略的制定以及植物遗传资源的鉴定和利用等方面的内容,并强调保护遗传学研究是未来生物多样性和保护生物学研究中一个亟待加强的研究领域。     

Population structure and genetic diversity of wild <Emphasis Type="Italic">Helianthus</Emphasis> species from Mozambique

The production of sunflower suffered a major decline in Mozambique after its independence in 1975. Civil war, human activities and environmental damage subjected the species to an ecological stress contributing to reduce the number and size of wild populations. As this reduction is often related to a loss of genetic variation we estimated the genetic diversity within and among populations of wild Helianthus from five districts of Mozambique using RAPD markers. The 44 accessions studied grouped into four major clusters exhibiting structured variability with regard to geographic origin. A high level of genetic diversity (He = 0.350 and I = 0.527) was retained at the population level. The genetic variation among populations was high (59.7%), which is consistent with low gene flow (Nm = 0.338). The proportion of total genetic diversity residing among these populations should be kept in mind to devise different conservation strategies in order to preserve these populations. Currently wild Helianthus genetic resources present in Maputo and Sofala are on the edge of extinction mainly due to excessive urbanization. Therefore, conservation of what remains of this plant genetic diversity is essential for sustainable utilization and can be useful for breeding programs.     

Life history,larval dispersal,and connectivity in coral reef fish among the Scattered Islands of the Mozambique Channel

The Western Indian Ocean harbors one of the world’s most diverse marine biota yet is threatened by exploitation with few conservation measures in place. Primary candidates for conservation in the region are the Scattered Islands (Îles Éparses), a group of relatively pristine and uninhabited islands in the Mozambique Channel. However, while optimal conservation strategies depend on the degree of population connectivity among spatially isolated habitats, very few studies have been conducted in the area. Here, we use highly variable microsatellite markers from two damselfishes (Amphiprion akallopisos and Dascyllus trimaculatus) with differing life history traits [pelagic larval duration (PLD), adult habitat] to compare genetic structure and connectivity among these islands using classic population structure indices as well as Bayesian clustering methods. All classical fixation indexes F _ST, R _ST, G′_ST, and Jost’s D show stronger genetic differentiation among islands for A. akallopisos compared to D. trimaculatus, consistent with the former species’ shorter PLD and stronger adult site attachment, which may restrict larval dispersal potential. In agreement with these results, the Bayesian analysis revealed clear genetic differentiation among the islands in A. akallopisos, separating the southern group (Bassas da India and Europa) from the center (Juan de Nova) and northern (Îles Glorieuses) islands, but not for D. trimaculatus. Local oceanographic patterns such as eddies that occur along the Mozambique Channel appear to parallel the results reported for A. akallopisos, but such features seem to have little effect on the genetic differentiation of D. trimaculatus. The contrasting patterns of genetic differentiation between species within the same family highlight the importance of accounting for diverse life history traits when assessing community-wide connectivity, an increasingly common consideration in conservation planning.

     

Model‐based conservation planning of the genetic diversity of Phellodendron amurense Rupr due to climate change

Climate change affects both habitat suitability and the genetic diversity of wild plants. Therefore, predicting and establishing the most effective and coherent conservation areas is essential for the conservation of genetic diversity in response to climate change. This is because genetic variance is a product not only of habitat suitability in conservation areas but also of efficient protection and management. Phellodendron amurense Rupr. is a tree species (family Rutaceae) that is endangered due to excessive and illegal harvesting for use in Chinese medicine. Here, we test a general computational method for the prediction of priority conservation areas (PCAs) by measuring the genetic diversity of P. amurense across the entirety of northeast China using a single strand repeat analysis of twenty microsatellite markers. Using computational modeling, we evaluated the geographical distribution of the species, both now and in different future climate change scenarios. Different populations were analyzed according to genetic diversity, and PCAs were identified using a spatial conservation prioritization framework. These conservation areas were optimized to account for the geographical distribution of P. amurense both now and in the future, to effectively promote gene flow, and to have a long period of validity. In situ and ex situ conservation, strategies for vulnerable populations were proposed. Three populations with low genetic diversity are predicted to be negatively affected by climate change, making conservation of genetic diversity challenging due to decreasing habitat suitability. Habitat suitability was important for the assessment of genetic variability in existing nature reserves, which were found to be much smaller than the proposed PCAs. Finally, a simple set of conservation measures was established through modeling. This combined molecular and computational ecology approach provides a framework for planning the protection of species endangered by climate change.     

森林遗传资源保护研究进展

森林遗传资源的保护事关现代及后代的利益,已引起全球的极大关注,自70年代以来,就地保护与迁地保护作为主要的战略在森林遗传资源保护实践中使用。一般来说森林遗传资源的就地保护可以通过建立自然保护区来实现。迁地保护主要包括种子库、田间基因库、种子园及细胞或组织培养等技术。就地保护和迁地保护应当相互补充,两者结合使用是保存森林遗传多样性的有效方法。对森林遗传资源保护战略的选择以及因贸易而濒危的热带材用树及其保护问题也作了简要评述。