Increasing modularity when downscaling networks from species to individuals

Downscaling networks from species to individuals is a useful approach to incorporate inter‐individual variation and to investigate whether topology of species‐based networks results from processes acting at the scale of individuals, such as foraging behaviour. Here, we analyzed pollen‐transport networks at two scales, i.e. pollinator species–plant species (sp–sp) and pollinator individuals–plant species (i–sp), and assessed whether modularity – a prevalent pattern in most pollination networks – is consistent across both scales. To test this we use three different algorithms developed for the calculation of modularity (unipartite, bipartite and weighted bipartite modularity) and compare the results obtained. Downscaling networks revealed a higher modular structure in i–sp networks than in sp–sp networks, regardless of the modular metric used. Using a null model approach, we show that modularity at the individual scale is originated by the existence of a high heterogeneity and specialization in the partition of pollen resources among conspecific individuals, a pattern which obviously cannot be observed at the species level. Modules in i–sp networks consisted of individuals sometimes neither taxonomically nor functionally related, but sharing common pollen resources at different moments of the flowering season. Interestingly, conspecific individuals may belong to different modules. Both plant and insect phenologies were important drivers of the modularity detected in individual‐based networks, even determining the topological roles of nodes in the networks. A temporal turnover of modules was identified, i.e. modules of individuals assembled and disassembled over time as species modify their foraging choices throughout the flowering season adjusting to ecological conditions. Downscaling from species to individual‐based networks is a promising approach to study the interplay among structural patterns and processes at different, but interdependent organizational levels.     

Local recruitment of great and blue tits (Parus major, P. caevuleus) in relation to study plot size and degree of isolation

Few studies are available that analyse variation in dispersal rates between populations. Here we present data on the degree of local recruitment (LR) of great and blue tits ( Parus major. P. caeruleus ) in a large number of nest-box plots in northern Belgium that vary in size, degree of isolation and population density. These plots have been studied for varying lengths of time over the past 40 yr. As expected. LR was higher among male than female birds, and this difference was most pronounced in blue tits. Regardless of species and sex. more local recruits were found in larger plots but also in plots with a higher population density. Thus, LR increased with population size (number of pairs) but levelled off in the largest populations at ca 50% for male birds. LR was higher in forest fragments compared to plots inside continuous forest, suggesting that fragmentation reduces exchange among local populations. However, LR was not related to the degree of isolation of individual fragments. We also found a weak but significant increase in LR with productivity (number of nestlings) of plots, but no relationship with other demographic variables.     

Translocation of overabundant species: Implications for translocated individuals

Effective management of overabundant animal populations is a difficult challenge for wildlife managers around the globe. Translocation is often considered a viable management tool, whereby individual animals are removed from areas of high population density and released in areas where densities are lower. Typically, the success of a translocation program is measured at the population source, with little attention given to the fate of translocated individuals. Here we use a koala (Phascolarctos cinereus) translocation program from southeastern Australia as a case study to investigate the effects of translocation on individual animals. The koala is an iconic species that occurs at high densities in some parts of its southern range, leading to numerous conservation and animal welfare issues. Between 1997 and 2007 over 3,000 koalas from a high-density island population were captured, surgically sterilized, and translocated to the mainland. Annual post-translocation surveys at release sites revealed densities of ≤0.4 koalas/ha, despite release densities of 1.0 koala/ha. Radiotracking studies indicate that low densities were because of both mortality and high dispersal of translocated individuals. We observed a mortality rate of 37.5% for translocated koalas in the first 12 months post-release. No deaths occurred among animals that were not sterilized and translocated. Translocated koalas moved greater distances than non-translocated animals. Monitoring of translocated individuals should be performed routinely during translocation programs for overabundant species. Due consideration must be given to what is an acceptable level of mortality for translocated individuals. Although often considered an ethically acceptable management technique (especially for iconic and charismatic species), translocation may not always be the best option from an animal welfare perspective. © 2012 The Wildlife Society.     

Population synchrony within and among Lepidoptera species in relation to weather, phylogeny, and larval phenology

Abstract.  1. The population dynamics of native herbivore species in central Appalachian deciduous forests were studied by analysing patterns of synchrony among intra- and interspecific populations and weather.
2. Spatial synchrony of 10 Lepidoptera species and three weather variables (minimum temperature, maximum temperature, precipitation) from 12 sites was measured using cross-correlation functions relating levels of synchrony to the distance separating each set of populations. Based on both the pattern of synchrony and the region-wide cross-correlation coefficients, Lepidoptera species appear to be synchronised, at least in part, by local weather conditions.
3. Interspecific cross-correlations were calculated for all sympatric species pairs and trends in interspecific synchrony were related to phylogenetic relatedness, life-history timing, and weather. Interspecific synchrony was highest among species whose larvae were present during the same time of the season, but there was no relationship between interspecific synchrony and phylogenetic affinity.
4. Spatial synchrony of weather variables was significantly related to both species of some interspecific pairs, indicating weather as a potential mechanism involved in synchronising populations of different species.     

On the analysis of competition at the level of the individual plant

Summary The extent to which some measure of local crowding can account for the performance of individual plants is examined with reference to populations of two species of annual plant. Only a relatively small proportion of the variation in individual plant yield could be accounted for by measures of local crowding. These included the number of close neighbours, an estimate of the area available to each plant and competitive pressure. A multiple regression that took account of both emergence time and local crowding increased the proportion of variance that could be accounted for up to 50%. Computer simulations of the growth of indivudual plants in monoculture were then caried out in order to determine whether the unexplained variation resulted from fundamental flaws in the models or from unaccounted for sources of variation in the field. The results from the simulations again indicated that only a relatively low proportion of the variation in individual plant yield could be accounted for by emergence time and local density, even though these were known to be the only variables present. These findings are discussed in relation to the relative importance of one-sided and two-sided competition, and the complex cross-correlations that occur between individuals in plant populations. These two factors will make it very difficult for field workers to determine accurately what factors determine individual plant yield and in particular to predict the effects of local crowding on the performance of individual plants.     

Specialization and habitat: spatial and environmental effects on abundance and genetic diversity of forest generalist and specialist Carabus species

Habitat specialist species are supposed to be more susceptible to variations in local environmental characteristics than generalists. To test this hypothesis, we conducted a comparative analysis on abundance and genetic diversity of forest carabids differing in their habitat requirements. Four species were sampled in forests characterized by abiotic, landscape and biotic environmental variables. A statistical framework based on canonical correspondence analysis was used for one habitat generalist and one habitat specialist species to determine the relative contribution of environmental variables in structuring inter- and intrapopulational genetic diversity depicted by microsatellites. Our results showed that sympatric species differed in their sensitivity to environmental variables. The same variables were found to be important in analyses of abundance and genetic data. However, specialization was not related to a greater sensitivity to local environmental characteristics. The strong impact of spatial variables on genetic data suggested that genetic variation among populations would largely reflect the response of individual species to dispersal opportunities more than the effect of habitat quality.     

Connectivity and cladoceran species richness in a metacommunity of shallow lakes

SUMMARY 1. The shallow ponds of the nature reserve 'De Maten' form a metacommunity, in which individual ponds are highly interconnected via a system of overflows and rivulets. This study reports on the relations between cladoceran species richness and (a) connectivity patterns and (b) local environmental variables.
2. No relation was found between local species richness and three connectivity variables or dispersal pathways.
3. Spatial configuration was related to richness, but was confounded by environmental variables for 2 of 3 years. In those 2 years, there was a significant linear relation between Secchi disc depth and species richness, suggesting an important impact of the clearwater/turbid state alternative equilibria in shallow lakes in determining cladoceran richness. Only in the year in which environmental variables were unimportant did connectivity between the ponds influence species richness.
4. These results suggest that local environmental variables related to the clearwater/turbid state alternative equilibria in shallow lakes are important in determining cladoceran species richness. Connectivity and dispersal of individuals between the different ponds only act secondarily by increasing the general species richness within a pond through dispersal from ponds with different environmental conditions.     

Variation between individuals fosters regional species coexistence

Although individual‐level variation (IV) is ubiquitous in nature, it is not clear how it influences species coexistence. Theory predicts that IV will hinder coexistence but empirical studies have shown that it can facilitate, inhibit, or have a neutral effect. We use a theoretical model to explore the consequences of IV on local and regional species coexistence in the context of spatial environmental structure. Our results show that individual variation can have a positive effect on species coexistence and that this effect will critically depend on the spatial structure of such variation. IV facilitates coexistence when a negative, concave‐up relationship between individuals’ competitive response and population growth rates propagates to a disproportionate advantage for the inferior competitor, provided that each species specialises in a habitat. While greater variation in the preferred habitat generally fosters coexistence, the opposite is true for non‐preferred habitats. Our results reconcile theory with empirical findings.     

Studies into abstract properties of individuals. IV. Emergence In different aged needle primordia of Douglas fir

Young, middle aged and older Douglas fir needle primordia, as determined by distance from the apical meristem, were measured and analyzed to compare levels and patterns of emergence related to development time. Emergence was seen in the differently aged needle primordia, generally most noticeable in the oldest and the least apparent in the youngest. There was also a negative relationship between variation in size and degree of emergence, and a positive one with variation in organization. The increasing level of emergence that appears with age can be related to the continual expression of information and the concomitant increase in complexity that marks ontogeny and is the result of diverging developmental trajectories. The histogenetic events seen in ontogeny can be interpreted as 'clocks' generating local time through the interactions among cells and tissues that make up the needle primordia. Emergent properties are manifested through the local events that mark ontogeny, and also through the expression of phylogenetic information, or the local expression of global (historical) levels of organization.     

Rethinking phenotypic plasticity and its consequences for individuals,populations and species

Much research has been devoted to identify the conditions under which selection favours flexible individuals or genotypes that are able to modify their growth, development and behaviour in response to environmental cues, to unravel the mechanisms of plasticity and to explore its influence on patterns of diversity among individuals, populations and species. The consequences of developmental plasticity and phenotypic flexibility for the performance and ecological success of populations and species have attracted a comparatively limited but currently growing interest. Here, I re-emphasize that an increased understanding of the roles of plasticity in these contexts requires a ‘whole organism'' (rather than ‘single trait'') approach, taking into consideration that organisms are integrated complex phenotypes. I further argue that plasticity and genetic polymorphism should be analysed and discussed within a common framework. I summarize predictions from theory on how phenotypic variation stemming from developmental plasticity and phenotypic flexibility may affect different aspects of population-level performance. I argue that it is important to distinguish between effects associated with greater interindividual phenotypic variation resulting from plasticity, and effects mediated by variation among individuals in the capacity to express plasticity and flexibility as such. Finally, I claim that rigorous testing of predictions requires methods that allow for quantifying and comparing whole organism plasticity, as well as the ability to experimentally manipulate the level of and capacity for developmental plasticity and phenotypic flexibility independent of genetic variation.     

Influence of climate on the presence of colour polymorphism in two montane reptile species

The coloration of ectotherms plays an important role in thermoregulation processes. Dark individuals should heat up faster and be able to reach a higher body temperature than light individuals and should therefore have benefits in cool areas. In central Europe, montane local populations of adder (Vipera berus) and asp viper (Vipera aspis) exhibit a varying proportion of melanistic individuals. We tested whether the presence of melanistic V. aspis and V. berus could be explained by climatic conditions. We measured the climatic niche position and breadth of monomorphic (including strictly patterned individuals) and polymorphic local populations, calculated their niche overlap and tested for niche equivalency and similarity. In accordance with expectations, niche overlap between polymorphic local populations of both species is high, and even higher than that of polymorphic versus monomorphic montane local populations of V. aspis, suggesting a predominant role of melanism in determining the niche of ectothermic vertebrates. However, unexpectedly, the niche of polymorphic local populations of both species is narrower than that of monomorphic ones, indicating that colour polymorphism does not always enable the exploitation of a greater variability of resources, at least at the intraspecific level. Overall, our results suggest that melanism might be present only when the thermoregulatory benefit is higher than the cost of predation.     

A search for conceptual congruence between individuals and species

A new argument that species are individuals has recently been presented based on the way species names are used and systemic logic. The alternate idea that species are a categorical item, i.e., collections of individuals, was rejected. We wanted to evaluate this approach by establishing concepts that apply to individuals in order to examine if they are also applicable to a species viewed as a categorical item. It is our thinking that if species are not such, then concepts applicable to individuals will not be applicable to species so viewed. Individuals and species are similar in the presence of conceptual boundaries, unidirectional change and the presence of past and future time. These are all central, and salient, biological phenomena. But, these are concepts that apply also to populations which, for the most part, are not the same as species. Thus, these considerations infer that species, when viewed as a collection of individuals, do not share relevant concepts with individuals. Our conclusion is that a species is a 'unity' rather than an 'individual'.     

Genetic quality of individuals impacts population dynamics

Ample evidence exists that an increase in the inbreeding level of a population reduces the value of fitness components such as fecundity and survival. It does not follow, however, that these decreases in the components of fitness impact population dynamics in a way that increases extinction risk, because virtually all species produce far more offspring than can actually survive. We analyzed the effects of the genetic quality (mean fitness) of individuals on the population growth rate of seven natural populations in each of two species of wolf spider in the genus Rabidosa , statistically controlling for environmental factors. We show that populations of different sizes, and different inbreeding levels, differ in population dynamics for both species. Differences in population growth rates are especially pronounced during stressful environmental conditions (low food availability) and the stressful environment affects smaller populations (<500 individuals) disproportionately. Thus, even in an invertebrate with an extremely high potential growth rate and strong density-dependent mortality rates, genetic factors contribute directly to population dynamics and, therefore, to extinction risk. This is only the second study to demonstrate an impact of the genetic quality of individual genotypes on population dynamics in a wild population and the first to document strong inbreeding–environment interactions for fitness among populations. Endangered species typically exist at sizes of a few hundred individuals and human activities degrade habitats making them innately more stressful (e.g. global climate change). Therefore, the interaction between genetic factors and environmental stress has important implications for efforts aimed at conserving the Earth's biodiversity.     

Dynamic process,spatial pattern and species coexistence in plants

The significance of dynamic processes of individual genets/ramets for the spatial pattern of plant species and community structure is discussed. It is suggested that under a different mode of competition (symmetric vs. asymmetric), spatial distribution of individuals, initial size distribution at the establishment stage and boundary conditions as recruitment influence differently the species coexistence pattern. It is therefore important to consider the mode of competition for the study of community structure. To know the mode and degree of intra- and interspecific competition, the dynamic processes of individual genets/ramets must be studied by following the growth, mortality and recruitment of each genet/ramet of each component species in a plant community. The models and methods of plant population ecology are therefore useful also for plant community ecology.     

Trophic ecology of adult male Odonata. I. Dietary niche metrics by foraging guild,species, body size,and location

1. Information on the dietary niches of adult odonates is sparse, as they are highly mobile and evasive animals, which makes them difficult to observe in their natural habitat. Moreover, there is a lack of knowledge on how varying behavioural traits of odonates relate to phenomena like niche partitioning. 2. This study investigated niche partitioning amongst odonate species, foraging guilds and size classes in a riverine system in the Eastern Cape province of South Africa. A combination of stable isotope and fatty acid‐based niches was used to infer odonate feeding. 3. Both fatty acid and stable isotope‐based niches showed that there was niche separation amongst odonates that forage in flight (fliers) and those that forage from a perch (perchers), amongst odonates of different size classes (damselflies, medium‐ and large‐sized dragonflies), and amongst species, although varying levels of niche overlap were observed in each case. 4. Niche sizes of odonates varied between an upstream and a downstream site. Generally greater niche overlap was recorded at the narrow upstream site (associated with low insect emergence rates) than the wider downstream site (associated with high insect emergence rates), indicating that a greater degree of resource sharing occurred at the upstream site where aquatic food was less abundant. 5. The findings of this study suggest that dietary niches of odonates can be influenced by foraging guild, body size, and/or environmental conditions, and additional study in a variety of regions is recommended to determine the greater applicability of these findings.     

Odour-genes eovariance and differential investigation of individual odours in the Mus species complex

Previous research using habituation techniques has demonstrated that greater genetic similarity between two individuals is associated with more similarity in the qualities of their individual odours ('odour-genes eovariance'). We assessed odour similarities across species in two pairs of genetically close species within the Mus species complex (M. musculus and M. domesticus; M. spicilegus and M. macedonicus). Subjects treated odours within each species pair as similar compared with an odour from the other species pair. Subjects also treated odours of M. spicilegus males from the same population as similar compared with the odour of M. spicilegus males from a different population. This confirms odour-genes eovariance across species and within populations and also supports previous findings that odour similarities are more salient than specific odour markers. When adult males were presented with odours of females from two different heterospecific species, subjects spent more time investigating the odour from his own species pair than the other species pair, indicating greater interest in the odour of the closer heterospecific and demonstrating that odour-genes eovariance is reflected in behavioural responses to odours. Implications of odour-genes eovariance as a basis for identifying degrees of genetic relatedness of unfamiliar individuals through similarities in individual odours are discussed.     

Usual populations, unusual individuals: insights into the behavior and management of asian elephants in fragmented landscapes

Background

A dearth in understanding the behavior of Asian elephants (Elephas maximus) at the scale of populations and individuals has left important management issues, particularly related to human-elephant conflict (HEC), unresolved. Evaluation of differences in behavior and decision-making among individual elephants across groups in response to changing local ecological settings is essential to fill this gap in knowledge and to improve our approaches towards the management and conservation of elephants.

Methodology/Principal Findings

We hypothesized certain behavioral decisions that would be made by Asian elephants as reflected in their residence time and movement rates, time-activity budgets, social interactions and group dynamics in response to resource availability and human disturbance in their habitat. This study is based on 200 h of behavioral observations on 60 individually identified elephants and a 184-km² grid-based survey of their natural and anthropogenic habitats within and outside the Bannerghatta National Park, southern India during the dry season. At a general population level, the behavioral decisions appeared to be guided by the gender, age and group-type of the elephants. At the individual level, the observed variation could be explained only by the idiosyncratic behaviors of individuals and that of their associating conspecific individuals. Recursive partitioning classification trees for residence time of individual elephants indicated that the primary decisions were taken by individuals, independently of their above-mentioned biological and ecological attributes.

Conclusions/Significance

Decision-making by Asian elephants thus appears to be determined at two levels, that of the population and, more importantly, the individual. Models based on decision-making by individual elephants have the potential to predict conflict in fragmented landscapes that, in turn, could aid in mitigating HEC. Thus, we must target individuals, in addition to populations, in our efforts to manage and conserve this threatened species, particularly in human-dominated landscapes.     

A Review of the Biology of <Emphasis Type="Italic">Gambusia affinis</Emphasis> and <Emphasis Type="Italic">G. holbrooki</Emphasis>

Eastern and Western Gambusia (i.e., Gambusia holbrooki and G. affinis, respectively) are considered together here because these two fish species are very closely related, similar in appearance, similar in biology and often confused. Widely divergent attitudes have developed with regard to these fish with some viewing them as being highly beneficial to humans through controlling mosquitoes and the diseases they harbor, and others expressing concern about the negative impacts that these fish may have on other species with which they interact. Because of the widespread distribution, high levels of abundance, ease of capture and captive maintenance, and divergent attitudes, a very large and diffuse literature has developed with regard to these species. In fact, few fish species have been studied as much as or more than these two species combined. There has, however, been no comprehensive review of their biology published to date. As it is not possible to provide a comprehensive review of Gambusia biology in one reasonably sized document, I provide here a review of aspects of their biology at the level of species and individual. In another review I focused instead on the levels of population and species communities and consider the impacts that these fish have on mosquitoes and other organisms (Pyke, unpublished). As would be expected of such widespread and abundant species, Gambusia affinis and G. holbrooki are clearly very tolerant, adaptable and variable in their biology, at both an individual and population level. Both individuals and populations can tolerate, and often thrive within, a wide range of conditions and the abilities of individuals to do this are enhanced if they have time to acclimate to any changes. Populations can adapt through genetic or evolutionary changes in response to conditions that vary in space or time, and there is significant genetic variation within and between populations.     

Comparing the consequences of natural selection,adaptive phenotypic plasticity,and matching habitat choice for phenotype–environment matching,population genetic structure,and reproductive isolation in meta‐populations

Organisms commonly experience significant spatiotemporal variation in their environments. In response to such heterogeneity, different mechanisms may act that enhance ecological performance locally. However, depending on the nature of the mechanism involved, the consequences for populations may differ greatly. Building on a previous model that investigated the conditions under which different adaptive mechanisms (co)evolve, this study compares the ecological and evolutionary population consequences of three very different responses to environmental heterogeneity: matching habitat choice (directed gene flow), adaptive plasticity (associated with random gene flow), and divergent natural selection. Using individual‐based simulations, we show that matching habitat choice can have a greater adaptive potential than plasticity or natural selection: it allows for local adaptation while protecting genetic polymorphism despite global mating or strong environmental changes. Our simulations further reveal that increasing environmental fluctuations and unpredictability generally favor the emergence of specialist genotypes but that matching habitat choice is better at preventing local maladaptation by individuals. This confirms that matching habitat choice can speed up the genetic divergence among populations, cause indirect assortative mating via spatial clustering, and hence even facilitate sympatric speciation. This study highlights the potential importance of directed dispersal in local adaptation and speciation, stresses the difficulty of deriving its operation from nonexperimental observational data alone, and helps define a set of ecological conditions which should favor its emergence and subsequent detection in nature.