Delimitation of evolutionary units in Cuvier’s dwarf caiman, <Emphasis Type="Italic">Paleosuchus palpebrosus</Emphasis> (Cuvier, 1807): insights from conservation of a broadly distributed species

An important goal of evolutionary and conservation biology is the identification of units below the species level, such as Evolutionarily Significant Units (ESUs), providing objectively delimited units for species conservation and management. In this study we tested the hypothesis that Cuvier’s dwarf caiman (Paleosuchus palpebrosus)—a species broadly distributed across several biomes and watersheds of South America—is comprised of different ESUs. We analyzed mitochondrial cytochrome b sequences of 206 individuals and 532 unlinked ddRAD loci of 20 individuals chosen from amongst the mitochondrial haplogroups. Analysis of the cytochrome b sequences revealed four mitochondrial clusters, while STRUCTURE analysis of ddRAD loci detected three genomic clusters with different levels of mixture between them. Using the Adaptive Evolutionary Conservation (AEC) framework we identified three ESUs: “Amazon”, “Madeira-Bolivia” and “Pantanal”; one of them composed of two different Management Units (MUs), “Madeira” and “Bolivia”. In general, based on the comparisons with other crocodilian species, genetic diversity of each lineage was moderate however, the Madeira MU showed fivefold lower genetic diversity than other geographic groups. Considering the particularities of each Paleosuchus palpebrosus conservation unit, we recommend that the conservation status of each is evaluated separately. Tropical biodiversity is largely underestimated and in this context the broadly distributed species are the most likely candidates to harbor distinct evolutionary lineages. Thus, we suggest that conservation research should not neglect species that are generally considered of Least Concern by IUCN due to the taxon’s broad geographic distribution.     

Channa siamensis (Günther, 1861), a junior synonym of Channa lucius (Cuvier in Cuvier and Valenciennes, 1831)

The holotype of Channa siamensis (Günther, 1861) was examined and compared with specimens of all other channid species currently considered to be valid (2 genera, 27 species). As all of the examined morphological characters (meristics, morphometrics, coloration, a patch of gular scales, and cephalic sensory pores) of the small-sized hototype (74.2 mm SL) agree with those for C. lucius except for slight gaps in predorsal length and interorbital width (subject to allometric changes), the authors concluded that C. siamensis is a junior synonym of C. lucius (Cuvier in Cuvier and Valenciennes, 1831). Received: April 25, 1999 / Revised: December 6, 2000 / Accepted: February 16, 2001     

Species of Monogenoidea infecting the gill lamellae of the common silver-biddy <Emphasis Type="Italic">Gerres oyena</Emphasis> (Forsskål) and the common silver belly <Emphasis Type="Italic">Gerres subfasciatus</Emphasis> Cuvier (Perciformes: Gerreidae) in Moreton Bay,Queensland, Australia

As part of a survey of the parasites infecting the fishes of Moreton Bay, Queensland, Australia, the gill lamellae of two species, the common silver-biddy Gerres oyena (Forsskål) and the common silver belly Gerres subfasciatus Cuvier (both Gerreidae), were found infected with monogenoids as follows: Metahaliotrema filamentosum Venkatanarasaiah, 1981 (Dactylogyridae) was redescribed from G. oyena and recorded from G. subfasciatus (both new host records); Metahaliotrema imparilis n. sp., Protogyrodactylus monacanthus n. sp., Protogyrodactylus vulgaris n. sp. (all Dactylogyridae), Gyrodactylus xynus n. sp. (Gyrodactylidae), and Polylabris gerres (Sanders, 1944) Mamaev & Parukin, 1976 (Microcotylidae) were reported from G. subfasciatus; and Protogyrodactylus scalmophorus n. sp., Protogyrodactylus ichthyocercus n. sp., and Protogyrodactylus similis n. sp. were recorded from G. oyena. The new species are described, and the finding of M. filamentosum and P. gerres from Moreton Bay represent new geographic records. Haliotrema digyroides Zhang, 2001 and Haliotrema subancistroides Zhang, 2001 are transferred to Metahaliotrema Yamaguti, 1953 as Metahaliotrema digyroides (Zhang, 2001) n. comb. and Metahaliotrema subancistroides (Zhang, 2001) n. comb., respectively.     

α<Subscript>1</Subscript>-Thymosin, α<Subscript>2</Subscript>-interferon,and the LKEKK syntetic peptide inhibit the binding of the B subunit of the cholera toxin to intestinal epithelial cell membranes

The ¹²⁵I-labeled B-subunit of the cholera toxin ([125I]CT-B, specific activity of 98 Ci/mmol) was prepared. This subunit was shown to be bound to the membranes which were isolated from epithelial cells of a mucous tunic of the rat thin intestine with high affinity (K _d = 3.7 nM). The binding of the labeled protein was inhibited by the unlabeled α₂-interferon (IFN-α₂), α₁-thymosin, (TM-α₁), and the LKEKK synthetic peptide corresponding to the 16–20 sequence of TM-α₁ and the 131–135 sequence of human IFN-α₂ (Ki 1.0, 1.5, and 2.0 nM, respectively), whereas the KKEKL unlabeled synthetic peptide did not inhibit the binding (K _i > 100 μМ). The LKEKK peptide and CT-B were shown to dose-dependently increase an activity of the soluble guanylate cyclase (sGC) in the concentration range from 10 to 1000 nM. Thus, the binding of TM- α₁, IFN-α₂, and the LKEKK peptide to the CT-B receptor on a surface of the epithelial cells of the mucous tunic of the rat thin intestine resulted in an increase in the intracellular level of cGMP.     

Reproduction of Oligosarcus hepsetus (Cuvier, 1829) (Characiforms) in the Serra do Mar State Park, S?o Paulo, Brazil.

The purpose of this study was to characterize the reproduction of Oligosarcus hepsetus in the Grande river (Santa Virginia Unit - Serra do Mar State Park) based on the reproductive period, length of first gonadal maturation for both sexes, sexual proportion, oocyte development, type of spawn and fecundity. The Grande river was sampled monthly from January through December 2004. The numerical frequency of the stages of maturity and the volumetric method were utilized to determine the reproductive period and fecundity, respectively. The reproduction of Oligosarcus hepsetus was characterized by a long period, relatively low fecundity, precocious length of first gonadal maturation and parceled spawning.     

Meet the new mammoth,same as the old? Resurrecting the <Emphasis Type="Italic">Mammuthus primigenius</Emphasis>

Media reporters often announce that we are on the verge of bringing back the woolly mammoth, even while there is growing consensus among scientists that resurrecting the mammoth is unlikely. In fact, current “de-extinction” efforts are not designed to bring back a mammoth, but rather adaptations of the mammoth using close relatives. For example, Harvard scientists are working on creating an Asian elephant with the thick coat of a mammoth by merging mammoth and elephant DNA. But how should such creatures be classified? Are they elephants, mammoths, or both? Answering these questions requires getting clear about the concept of reproduction. What I hope to show is that with an appropriate notion of reproduction—one for which I will argue—resurrecting a member of Mammuthus primigenius is a genuine possibility.     

Object Depots in the Genus <Emphasis Type="Italic">Pogonomyrmex</Emphasis>: Exploring the “Who,” What,When, and Where

Harvester ants of the genus Pogonomyrmex collect and deposit many items on top of their nests. The depots of P. badius consist mostly of small charcoal fragments, while those of other species are primarily pebbles. Mature colonies can have hundreds of thousands of objects in their depot. In P. badius, the distributions of midden and charcoal about the mound are not completely overlapping, but are positively correlated in areas of overlap. Charcoal depots are isometric with colony size, but the amount of charcoal per colony size varies with season and site. The absence of the depot stimulates collection of nonfood objects. Recruitment to objects only occurs in the presence of food, and foragers choose objects based on size, but not color. An overview of current knowledge concerning depots in the genus indicates that depot formation is likely the ancestral state in the North American species. Furthermore, it is likely that selection is operating indirectly on these depots through selection on many dependent tasks.     

Is sexual segregation in the guppy, <Emphasis Type="Italic">Poecilia reticulata</Emphasis>, consistentwith the predation risk hypothesis?

We examined the importance of sex differences in predation risk in generating sexual segregation in the guppy, Poecilia reticulata. We hypothesised that sex differences in predation risk will result in habitat segregation and ultimately social segregation of the sexes, with the more vulnerable sex (males in this case) using safer habitats. In accordance with the predation risk hypothesis we observed sexual segregation in a population associated with high but not low predation risk. Under high predation risk we observed a larger proportion of males in shallow marginal habitats resulting in habitat segregation and ultimately social segregation of the sexes. Furthermore, habitat segregation by sex was associated with habitat segregation by body length with shoals in deeper water having a larger mean body length. Shoaling fish species have been key models in investigating group living, and further research directed towards understanding sexual segregation in other fish species would be valuable.     

<Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis>, the Baker’s Yeast,suppresses the growth of Ehrlich carcinoma-bearing mice

This study was undertaken to evaluate the effectiveness and mechanisms of anti-tumor activity of Baker’s yeast, Saccharomyces cerevisiae, in immunocompetent mice. Swiss albino mice were inoculated intramuscularly in the right thigh with Ehrlich Ascites Carcinoma (EAC) cells. At day 8, mice bearing Solid Ehrlich Carcinoma tumor (SEC) were intratumorally (IT) injected with killed S. cerevisiae (10 × 10⁶ and 20 × 10⁶ cells) for 35 days. Histopathology of yeast-treated mice showed extensive tumor degeneration, apoptosis, and ischemic (coagulative) and liquefactive necrosis. These changes are associated with a tumor growth curve that demonstrates a significant antitumor response that peaked at 35 days. Yeast treatment (20 × 10⁶ cells) three times a week resulted in a significant decrease in tumor volume (TV) (67.1%, P < 0.01) as compared to PBS-treated mice. The effect was determined to be dependent on dose and frequency. Yeast administered three and two times per week induced significant decrease in TV as early as 9 and 25 days post-treatment, respectively. Administration of yeast significantly enhanced the recruitment of leukocytes, including macrophages, into the tumors and triggered apoptosis in SEC cells as determined by flow cytometry (78.6%, P < 0.01) at 20 × 10⁶ cells, as compared to PBS-treated mice (42.6%). In addition, yeast treatment elevated TNF-α and IFN-γ plasma levels and lowered the elevated IL-10 levels. No adverse side effects from the yeast treatment were observed, including feeding/drinking cycle and life activity patterns. Indeed, yeast-treated mice showed significant final body weight gain (+21.5%, P < 0.01) at day 35. These data may have clinical implications for the treatment of solid cancer with yeast, which is known to be safe for human consumption.     

Analyzing the Interaction of RseA and RseB, the Two Negative Regulators of the ��E Envelope Stress Response, Using a Combined Bioinformatic and Experimental Strategy

The Escherichia coli envelope stress response is controlled by the alternative sigma factor, σ^E, and is induced when unfolded outer membrane proteins accumulate in the periplasm. The response is initiated by sequential cleavage of the membrane-spanning antisigma factor, RseA. RseB is an important negative regulator of envelope stress response that exerts its negative effects onσ^E activity through its binding to RseA. In this study, we analyze the interaction between RseA and RseB. We found that tight binding of RseB to RseA required intact RseB. Using programs that performed global and local sequence alignment of RseB and RseA, we found regions of high similarity and performed alanine substitution mutagenesis to test the hypothesis that these regions were functionally important. This protocol is based on the hypothesis that functionally dependent regions of two proteins co-evolve and therefore are likely to be sequentially conserved. This procedure allowed us to identify both an N-terminal and C-terminal region in RseB important for binding to RseA. We extensively analyzed the C-terminal region, which aligns with a region of RseA coincident with the major RseB binding determinant in RseA. Both allele-specific suppression analysis and cysteine-mediated disulfide bond formation indicated that this C-terminal region of similarity of RseA and RseB identifies a contact site between the two proteins. We suggest a similar protocol can be successfully applied to pairs of non-homologous but functionally linked proteins to find specific regions of the protein sequences that are important for establishing functional linkage.The Escherichia coli σ^E-mediated envelope stress response is the major pathway to ensure homeostasis in the envelope compartment of the cell (1-3). σ^E regulon members encode periplasmic chaperones and proteases, the machinery for inserting β-barrel proteins into the outer membrane and components controlling the synthesis and assembly of LPS (4-6). This pathway is highly conserved among γ-proteobacteria (6).The σ^E response is initiated when periplasmic protein folding and assembly is compromised (7-9). During steady state growth, σ^E is inhibited by its antisigma factor, RseA, a membrane-spanning protein whose cytoplasmic domain binds to σ^E with picomolar affinity (10-13). Accumulation of unassembled porin monomers serves as a signal to activate the DegS protease to cleave RseA in its periplasmic domain (14, 15). This initiates a proteolytic cascade in which RseP cleaves periplasmically truncated RseA near or within the cytoplasmic membrane to release the RseA_cytoplasmic-σ^E complex, and cytoplasmic ATP-dependent proteases complete the degradation of RseA thereby releasing active σ^E (16-19).RseB, a second negative regulator of the envelope stress response (11, 20, 21), binds to the periplasmic domain of RseA with nanomolar affinity. RseB is an important regulator of the response (2, 22, 23). It prevents RseP from degrading intact RseA, thereby ensuring that proteolysis is initiated only when the DegS protease is activated by a stress signal (21). Additionally, RseB prevents activated DegS from cleaving RseA, suggesting that interaction of RseB with RseA must be altered before the signal transduction cascade is activated (23).The goal of the present studies was to explore how RseB binds to RseA. The interaction partner of RseB is the unstructured periplasmic domain of RseA (RseA-peri). Within RseA-peri, amino acids ∼169-186 constitute a major binding determinant to RseB (23, 24). This peptide alone binds RseB with 6 μm affinity, and deleting this region abrogates binding to RseB (23). Additional regions of RseA-peri also contribute to RseB binding, as intact RseA-peri binds with 20 nm affinity to RseB (23). Much less is known about the regions of RseB required for interaction with RseA. RseB is homodimeric two-domain protein, whose large N-terminal domain shares structural homology with LolA, a protein that transports lipoproteins to outer membrane (24, 25). The smaller C-terminal domain is connected to the N-terminal domain by a linker, and the two domains share a large interface, which may facilitate interdomain signaling. Glutaraldehyde cross-linking studies indicate that the C-terminal domain interacts with RseA, but the regions of interaction were not identified (25).In the present report, we study the interaction of RseB and RseA. We establish that both domains of RseB interact with RseA-peri. Using a global sequence alignment, we discovered several regions in RseA and RseB that had high sequence similarity, despite the low overall sequence similarity between these two proteins, a finding that was independently confirmed by a local sequence similarity algorithm. This suggested that these regions were functionally dependent, and we performed a set of mutagenesis experiments designed to test this idea. Our studies of the binding properties of these mutants revealed that regions in both the N terminus and C terminus of RseB modulate interaction with RseA. Moreover, genetic suppression analysis and cysteine-mediated disulfide bond formation suggest that the region of RseA/B with highest similarity (RseA residues 165-191 (major binding determinant in RseA) and RseB residues 233-258) are interacting partners.     

Biology of the electric eel, <Emphasis Type="Italic">Electrophorus electricus</Emphasis>, Linnaeus, 1766 (Gymnotiformes: Gymnotidae) on the floodplain of the Curiaú River,eastern Amazonia

The evaluation of the growth patterns and reproductive strategies of fish species are vitally important for the understanding of their biology and the management of stocks. The present study focused on the Amazonian electric eel (Electrophorus electricus), which is capable of producing an electrical discharge of up to 800 V. Specimens were collected on a monthly schedule from a floodplain in the eastern Amazon basin. The gonads of these specimens were examined, and the sex ratio, growth parameters, population structure, body size at first gonadal maturation, and the gonadosomatic index were determined. A balanced sex ratio was found. Males were larger than females, and both sexes presented isometric growth, which is unusual in species with an elongated anatomy. This isometry may be related to the reduction of the coelomic cavity, and its position near the head. The spawning period coincided with the start of the rainy season, and continued until high water, with the variation in gonadal development following the fluctuations in precipitation and river water levels. The asymptotic body length in both sexes was relatively large, and was inversely related to the growth coefficient (k), with a slower growth rate being recorded in the males. Mortality rates were relatively low in comparison with most species of tropical fish. The larger size of the male may be related to their role in parental care, and sexual selection on the part of the females. These findings may be important for the management of wild stocks, as well as captive rearing.     

Does the “C3 effect” offset the Δ2 effect,as regards the solution flexibility of aldoses?

The solution flexibility of carbohydrates influences a variety of molecular recognition and regulatory processes. For aldoses and other monosaccharides, this flexibility is dictated by the orientations of the various hydroxyl (OH) groups present, which influences conformer and anomer ratios, interactions among these OH groups, and interactions between them and the surrounding solvent. Depending on the number and position of axial OH groups, a variety of structures can coexist in solutions at equilibrium. In 1950, as part of his pioneering studies on the shape of pyranoside rings, Reeves described the Δ2 effect, the greater destabilization of the pyranose ring conformation when the OH group on carbon 2 (C₂) is in the axial position. It was later proposed by Angyal that the Δ2 effect could be cancelled by the presence of an axial OH on C₃, termed here the “C₃ effect.” Employing size‐exclusion chromatography, an entropically‐controlled separation technique, we have investigated whether or not the C₃ and Δ2 effects indeed do compensate for one another with respect to their influence on the solution flexibility of select aldohexoses and aldopentoses. As will be seen, while qualitatively and semiquantitatively this mutual cancellation of effects does occur in aldohexoses, it does not appear to do so in aldopentoses. An explanation for the latter appears to lie in the variety of anomers and conformers present in equilibrium solutions of those aldopentoses studied and in the relative entropic contribution of individual conformers or anomers to the total solution flexibility. © 2013 Wiley Periodicals, Inc. Biopolymers 101: 703–711, 2014.     

Theoretical study on the substitution reactions of the germylenoid H<Subscript>2</Subscript>GeLiF with SiH<Subscript>3</Subscript>X (X = F,Cl, Br)

The substitution reactions of H₂GeLiF (G) with SiH₃X (X = F, Cl, Br) were investigated using calculations performed at the QCISD/6-311++G (d, p)//B3LYP/6-311+G (d, p) level of theory. The results led to the following conclusions. (i) The substitutions are nucleophilic reactions. There are two substitution paths, I and II, which both lead to the germane H₂GeFSiH₃. The enantiomers of this germane are obtained via these two paths if an H in SiH₃X is replaced with a different group or atom. (ii) Both substitution pathways show the same order of barrier heights (SiH₃F > SiH₃Cl > SiH₃Br). The difference between the bond energies of Li–X and Si–X may explain the precedence among the substitution reactions of G with SiH₃X. Path I has a lower activation barrier than path II, indicating that path I is more favorable. (iii) Comparison between the relevant insertion and substitution reactions shows that substitutions are more favorable and that the substitution product H₂GeFSiH₃ predominates over the insertion product. (iv) The substitution reactions of H₂GeLiF with SiH₃X are exothermic.     

Translational biomaterials — the journey from the bench to the market — think ‘product’

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Feeding habits of the juvenile striped weakfish, Cynoscion guatucupa Cuvier 1830, in Bahía Blanca estuary (Argentina): seasonal and ontogenetic changes

The aim of this study was to analyze the feeding habits of the juvenile striped weakfish, Cynoscion guatucupa Cuvier, from Bahía Blanca estuary, Argentina. C. guatucupa is one of the most important regional fishing resources although in the last 10 years landings have greatly decreased. The year class strength of fish as well as stock size and yield are determined during the early life stages. Knowledge about the diet of young C. guatucupa may therefore contribute to our better understanding of the influence that the changes occurring in the biota of the estuary exert on the abundance fluctuations of this species. To this end, we investigated the ontogenetic and seasonal dietary changes of C. guatucupa between 1.00 and 12.99 cm total length (age 0+), and we related them to changes in habitat use and prey selection. Two dietary shifts were found during ontogeny. The first shift, at approximately 4 cm total length, involved a change from demersal-pelagic prey (mysid shrimps) to demersal-benthic prey (Peisos petrunkevitchi Burkenroad). The second shift, at approximately 8 cm total length, involved a progressive increase in ichthyophagy (mainly an increase consumption of the Argentine anchovy Engraulis anchoita Hubbs & Marini). Seasonal dietary changes were also found. They evidenced the changes in the availability of organisms. In autumn, the chaetognath Sagitta friderici Ritter-Zahoni, P. petrunkevitchi, and E. anchoita were the dominant prey items; in winter, the copepod Labidocera fluviatilis Dahl along with S. friderici, mysids, and P. petrunkevitchi constituted the majority of the diet; and, in summer, mysids were the most important prey item consumed. Selectivity data showed that whereas some prey items, such as the copepods Acartia tonsa Dana and Paracalanus parvus (Claus) and S. friderici, were consistently negatively selected by all size classes throughout the year, other prey items, such as fish larvae, mysids, and P. petrunkevitchi,were selected in one season and avoided in another. Additional dietary seasonal differences observed in our research indicate that the limited food supply and the low water temperatures are limiting factors for winter juveniles in BahÕa Blanca estuary. These factors may also directly influence the more-than-10 cm total length seaward migration of large numbers of C. guatucupa that is registered at the end of every autumn.     

Alcide d’Orbigny entre Cuvier et Lamarck

In the History of Science, Alcide d’Orbigny has the distinctive characteristic to be placed, between Cuvier and Lamarck, who were the two masters of Natural Science for most of the 19th century. It is in this historical context that Alcide d’Orbigny lived. Of Cuvier, he remembered ideas on disasters and species fixedness without using the same evidence, for he was not a vertebrist. Of Lamarck, he rejected the ideas on life continuity and species transformation while using the research field opened by the Zoology and Invertebrate Palaeontology founder. Alcide d’Orbigny’s originality was to use Lamarck’s Invertebrate fossils as evidence of the ideas that Cuvier had based on Vertebrate fossils.     

<Emphasis Type="Italic">Palaxius salataensis</Emphasis> Brönnimann,Cros and Zaninetti, 1972, the oldest crustacean microcoprolite from the early Carboniferous of Guangxi,South China

Palaxius salataensis Brönnimann, Cros and Zaninetti, 1972 is described from early Carboniferous stromatolite mounds of a fore-reef slope setting from Laibin, Guangxi, South China. This is the oldest occurrence of internally structured crustacean coprolites. The geographic distribution and stratigraphic range of the ichnospecies as well as paleoecological implications of this new record of P. salataensis are discussed.