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1.
欧洲黑杨基因资源材性关联基因的SNP分析   总被引:9,自引:0,他引:9  
丁明明  黄秦军  苏晓华 《遗传》2008,30(6):795-800
以115个欧洲黑杨(Populus nigra L.)无性系为材料, 利用TaqMan技术分析了欧洲黑杨基因资源参与木质素和纤维素合成的酶(4CL、PAL和CesA2)的单核苷酸多态性, 并对分型的SNPs与木材材性性状(物理性状:基本密度、纤维长、纤维宽、微纤丝角; 化学性状: 木质素含量、纤维素含量、a 纤维素含量等)进行了相关分析。结果如下: (1)在对4CL、PAL和CesA2等3个基因进行检测时, 共获得27个SNPs标记, 对其中转换(A-G, C-T)有17个位点, 颠换(A-C, G-C, G-T, A-T等)有10个位点; (2)对其中的3个SNPs进行了分型, 分别记作SNP1、SNP2和SNP3; (2)对已经分型SNPs位点与材性性状进行方差分析, 结果显示, 3个SNPs中只有SNP1与4年生欧洲黑杨综纤维素含量显著相关, 表现为负效应, 贡献率为11.11%; (3)对欧洲黑杨4CL基因的SNP1标记的不同基因型所对应的材性性状进行方差分析, 结果显示基因型为CC和CT的欧洲黑杨相对于基因型为TT的欧洲黑杨有较高的纤维素含量。  相似文献   

2.
Aims: To screen and characterize a novel fungus with powerful and selective delignification capability on wheat straw. Methods and Results: A fungus capable of efficient delignification under solid‐state fermentation (SSF) conditions on wheat straw was screened. After 5 days of incubation, 13·07% of the lignin was removed by fungal degradation, and 7·62% of the holocellulose was lost. Furthermore, 46·53% of the alkali lignin was removed after 2 days of liquid fermentation. The fungus was identified as Fusarium concolor based on its morphology and an analysis of its 18S rDNA gene sequence. The molecular weight distribution of lignin was evaluated by gel permeation chromatography. Enzyme assay indicated that the fungus produced laccase, cellobiose dehydrogenase, xylanase and cellulase during the incubation period. Intracellular lignin peroxidase, manganese peroxidase and laccase were produced during liquid fermentation. Conclusions: We have successfully screened a fungus, F. concolor, which can efficiently degrade the lignin of wheat straw, with slight damage to the cellulose, after 5 days of SSF. Significance and Impact of the Study: The newly isolated strain could be used in pretreatment of lignocellulose materials prior to biopulping, bioconversion into fuel and substrates for the chemical industry.  相似文献   

3.
Dye decolourizing peroxidase (DyP) is an emerging biocatalyst with enormous bioremediation and biotechnological potentials. This study examined the global trend of research related to DyP through a bibliometric analysis. The search term ‘dye decolourizing peroxidase’ or ‘DyP-type peroxidase’ was used to retrieve published articles between 2007 and 2019 from the Web of Science (WoS) and Scopus databases. A total of 62 articles were published within the period, with an annual growth rate of 17·6%. The highest research output was observed in 2015, which accounted for about 13% of the total output in 12 years. Germany published the highest number of articles (n = 10, 16·1%) with a total citation of 478. However, the lowest number of published articles among the top 10 countries was observed in India and Korea (n = 2, 3·2%). Research collaboration was low (collaboration index = 4·08). In addition to dye decolourizing peroxidase(s) and DyP-type peroxidase(s) (n = 33, 53·23%), the top authors keywords and research focus included lignin and lignin degradation (n = 10, 16·1 %). More so, peroxidase (n = 59, 95·2%), amino acid sequence (n = 27, 46·8%), lignin (n = 24, 38·7%) and metabolism (n = 23, 37·1%) were highly represented in keywords-plus. The most common conceptual framework from this study include characterization, lignin degradation and environmental proteomics. Apart from the inherent efficient dye-decolourizing properties, this study showed that DyP has emerging biotechnological potentials in lignin degradation and remediation of phenolic environmental pollutants, which at the moment are under explored globally.  相似文献   

4.
Decomposition processes of Camellia japonica leaf litter were investigated over an 18-month period with reference to the role of fungal succession in the decomposition of lignin and holocellulose. Decomposition and fungal succession were studied in bleached and nonbleached portions of litter, which were precolonized by ligninolytic and cellulolytic fungi, respectively. Coccomyces nipponicum and Lophodermium sp. (Rhytismataceae), which can attack lignin selectively, caused mass loss of lignin and were responsible for bleaching during the first 4 months (stage I), whereas cellulolytic fungi caused mass loss of holocellulose in adjacent nonbleached portions. Soluble carbohydrates and polyphenols also decreased rapidly during this stage. Pestalotiopsis guepini, coelomycete sp.1, and the Nigrospora state of Khuskia oryzae caused mass loss of holocellulose between 4 and 14 months (stage II) and Xylaria sp. caused mass loss of both lignin and holocellulose from 14–18 months (stage III). In stages II and III, decomposition was more rapid in bleached portions than in nonbleached portions probably due to the prior delignification of lignified holocellulose in bleached portions. Frequencies of these fungi showed different responses among species to the pattern of changes in lignin and holocellulose contents during decomposition. Total hyphal length increased in both portions over the study period, but mycelia of basidiomycetes accounted for about 2% of total hyphal length, suggesting that their role in fungal succession and decomposition was low. Lignin and nitrogen contents were consistently lower and holocellulose content was higher in bleached portions than in nonbleached portions during decomposition. The succession of ligninolytic and cellulolytic fungi was a major driving factor that promoted decomposition and precolonization by ligninolytic fungi enhanced decomposition.  相似文献   

5.
Fungal pretreatment, using lignin-degrading microorganisms to improve lignocellulosic feedstocks with minimal energy input, is a potential alternative to physiochemical pretreatment methods. Identifying the kinetics for fungal pretreatment during solid substrate cultivation is needed to help establish the processing conditions for effective scale up of this technology. In this study, a set of mathematical models were proposed for describing the interactions between holocellulose consumption, lignin degradation, cellulase, ligninolytic enzyme, and the growth of Phanerochaete chrysosporium during a 14 day fungal pretreatment process. Model parameters were estimated and validated by the System Biology Toolbox in MatLab. Developed models provided sufficiently accurate predictions for fungal growth (R 2 = 0.97), holocellulose consumption (R 2 = 0.97), lignin degradation (R 2 = 0.93) and ligninolytic enzyme production (R 2 = 0.92), and fair prediction for cellulase production (R 2 = 0.61). The models provide valuable information for understanding the interactive mechanisms in biological systems as well as for fungal pretreatment process scale up and improvement.  相似文献   

6.
分析了湖北大贵寺国家森林公园野生青檀种群64份2~3年生青檀枝条檀皮的纤维成分.结果表明,该野生青檀枝条檀皮纤维的水分、灰分、冷水抽出物、热水抽出物等指标的平均值分别为8.267%、6.273%、24.025%、26.594%;1%NaOH抽出物、苯-醇抽出物、综纤维素、酸不溶木素等指标的平均值分别为60.904%、11.011%、56.759%、9.698%;纤维素吸光值为0.373.酸不溶木素、灰分、纤维素吸光值以及1% NaOH抽出物4个指标呈现近正态分布,其它指标的分布偏斜度较大;水分与1% NaOH抽出物、灰分与酸不溶木素、综纤维素与酸不溶木素之间具有显著的相关性(p<0.05);水分与灰分、水分与热水抽出物、水分与综纤维素、苯-醇抽出物与综纤维素、苯-醇抽出物与酸不溶木素之间具有极显著的相关性(p<0.01).平均连锁值取5.627时,可以把64个样品分为23类,说明大贵寺国家森林公园野生青檀群体檀皮纤维成分存在着较高的表型多样性,具有广阔的遗传改良前景.  相似文献   

7.
Some fossil wooden samples of the Tertiary period, extracted from the crater of the kimberlite BHP-Panda pipe from the Lac de Gras region (in the Canadian sub-Arctic area), and previously identified as Sequioxylon canadense Blokhina, were chemically examined to both assess their state of preservation and discuss about the possible causes of their decay. The chemical composition of fossils (in terms of holocellulose, lignin and ash amounts) was evaluated by means of wet analyses, together with the chromatographic analysis of dichloromethane extracts, and additionally measurements of the cation exchange capacity (CEC) of fossils were also carried out. The analyses revealed the complete loss of holocellulose (except for 2 out of 9 samples), whereas lignin became the predominant component, together with ash (whose amount in one case was as high as 47.5%). Moreover, CEC data showed that all acid carboxyls were transformed into carboxylates. They represented the most important form of residual carboxyl groups in the fossils, and were even more abundant than in the reference (fresh) wood. All these occurrences evidenced a generally high level of decay for the fossils, as a consequence of water leaching during burial, which determined both the hydrolysis of esters groups and the partial depolymerisation of lignin.  相似文献   

8.
The defensive secretion of the tenebrionid beetle, Eleodes beameri, is quite unlike the benzoquinone and 1-alkene secretion of other species of Eleodes and Tenebrionidae. Twenty-three compounds were isolated from the secretion by gas-liquid chromatography (GLC) and 13 of these were identified by infrared, nuclear magnetic resonance, ultraviolet, and mass spectroscopy. Identified compounds were: 1-nonene (3·2%), 1-undecene (<0·5%), n-hexanal (15·6%), n-heptanal (0·9%), n-octanal (4·5%), trans-2-hexenal (2·0%), trans-2-heptenal (1·5%), trans-2-nonenal (28·6%), trans-2-decenal (3·4%), n-3-nonanone (0·5%), n-1-nonen-3-one (16·8%), methyl-1,4-benzoquinone (22·0%), and 1-hexanol (<0·5%). 1-Nonen-3-one is unique to E. beameri. A number of minor components remain unidentified. The morphology and ultrastructure of the glands were similar to other species of Eleodes. The gland reservoirs are a pair of strongly bilobed sacs with narrow exit ducts opening between abdominal sternites 7 and 8. There are two types of secretory cell units: Type 1 consisting of cells closely attached to the reservoir intima, with large, central vesicles drained by highly convoluted tubules. Type 2 units are composed of a pair of cells functioning together, the cuticular organelle from the microvilli-filled vesicle of the distal cell (2a) passing through the vesicle of the proximal one (2b) and then draining more or less directly into the reservoir via a cuticular tubule.  相似文献   

9.
A central composite design was used to investigate the influence of the cooking conditions (time, temperature and phenol concentration) for wheat straw with phenol-water mixtures on the properties of the pulp obtained (yield and holocellulose, -cellulose, lignin and ethanol-benzene extractable contents) and the pH of the resulting wastewater. A second-order polynomial model consisting of three independent process variables was found to accurately describe the organosolv pulping of wheat straw. The equations derived predict the yield, the holocellulose, -cellulose, lignin and ethanol-benzene extractable contents of the pulp, and the pH of the wastewater with multiple-R, R2 and adjusted-R2 high values. The process variables must be set at low variables in order to ensure a high yield and pH. Conversely, if high holocellulose and -cellulose contents, and low lignin and ethanol-benzene extractable contents are desired, then a high temperature (200°C), long cooking time (120 min), and intermediate phenol concentration (65%) must be used.  相似文献   

10.
The skeletal dry weight of the 4.4 ± 0.2 cm size class of Asterias rubens L. from Kiel Bay in the western Baltic is 0.34 ± 0.08 g. The sum of calcium and magnesium carbonates in the skeleton amounts to 94.0 ± 1.3% while the individual concentrations are 86.9 ± 1.3% CaCO3 and 7.1 ± 0.7% MgCO3. The MgCO3 is 4% lower than expected for a magnesium calcite precipitated under Baltic temperature conditions (8°C). Strontium was not determined but strontium carbonate is known to be in the region of 0.4%. The remainder is organic matter and this gives rise to 2.9 ± 1.3% organic carbon.Animals studied were at the ‘waiting stage’ and their actual growth was minimal. Uptake of 45Ca in the skeleton consists of a fast step followed by a slow step. The fast step is attributed to saturation of exchangeable skeletal pools while the slow step is due to net deposition of CaCO3. Skeletal growth at the waiting stage calculated from the second rate constant was found to be 0.76 μg CaCO3j-mg skeleton?1 · day?1 or 0.09% · day?1 compared with 9.3 μg CaCO3 · mg skeletont1&#x0304; · day?1 or 1.1% · day?1 at log phase. The isotope method is considered superior to size-frequency analysis in that it is capable of detecting differences in growth rate in individuals of the same size class and thus provides an insight into asteroid population structure.  相似文献   

11.
A central composition design was developed to study the influence of process variables (temperature, pulping time and ethanol concentration) on the properties of the pulp produced (yield and holocellulose, alpha-cellulose and lignin contents) and the pH of the resulting wastewater, in the ethanol pulping of olive tree trimmings. The proposed equations reproduce the experimental results for the dependent variables with errors less than 5% for the holocellulose and alpha-cellulose contents, yield and wastewater pH, and less than 15% for the lignin content. Obtaining pulp with acceptably high yield (37.6%), high holocellulose and alpha-cellulose contents (above 88.8% and 46.9%, respectively), and low lignin contents (below 7.2%), entails operating at a pulping temperature of 200 degrees C, using an ethanol concentration of 75% and a pulping time of 60 min.  相似文献   

12.
Phalaris aquatica L., a rich in holocellulose (69.80 %) and deficient in lignin (6.70 %) herbaceous, perennial grass species, was utilized in a two-step (biomass pretreatment-enzymatic hydrolysis) saccharification process for sugars recovery. The Taguchi methodology was employed to determine the dilute acid pretreatment and enzymatic hydrolysis conditions that optimized hemicellulose conversion (75.04 %), minimized the production of inhibitory compounds (1.41 g/L), and maximized the cellulose to glucose yield (69.69 %) of mixed particulate biomass (particles <1000 μm) under batch conditions. The effect of biomass particle size on saccharification process efficiency was also investigated. It was found that small-size biomass particles (53–106 μm) resulted in maximum hemicellulose conversion (81.12 %) and cellulose to glucose yield (93.24 %). The determined optimal conditions were then applied to a combined batch pretreatment process followed by a fed-batch enzymatic hydrolysis process that maximized glucose concentration (62.24 g/L) and yield (92.48 %). The overall efficiency of the saccharification process was 88.13 %.  相似文献   

13.
Cell-free extracts from leaves of Tanacetum vulgare synthesised geraniol and nerol (3,7-dimethylocta-trans-2-ene-1-ol and its cis isomer) in up to 11·9 and 2·4% total yields from IPP-[4-14C] and MVA-[2-14C] respectively. Optimum preparations were obtained from plant material just before the onset of flowering. The ratio of the monoterpenols varied 28-fold for different preparations under conditions where these products or their phosphate esters were not interconverted. Similar extracts incorporated α-terpineol-[14C] and terpinen-4-ol-[14C] (p-menth-1-en-8- and -4-ol respectively) in 0·05 to 2·2% yields into a compound tentatively identified as isothujone (trans-thujan-3-one), and preparations from flowerheads converted IPP-[4-14C] in 2·7% yield into geranyl and neryl β-d-glucosides. Inhibitors of IPP-isomerase had little effect on the incorporation of IPP into the monoterpenols in cell-free systems from which endogenous compounds of low molecular-weight had been removed. The inference that a pool of protein-bonded DMAPP or its biogenetic equivalent was present was supported by the demonstration that geraniol and nerol biosynthesised in the absence of the inhibitors were predominantly (65 to 100%) labelled in the moiety derived from IPP.  相似文献   

14.
Valorization of lignin, an abundant component of plant cell walls, is critical to enabling the lignocellulosic bioeconomy. Biological funneling using microbial biocatalysts has emerged as an attractive approach to convert complex mixtures of lignin depolymerization products to value-added compounds. Ideally, biocatalysts would convert aromatic compounds derived from the three canonical types of lignin: syringyl (S), guaiacyl (G), and p-hydroxyphenyl (H). Pseudomonas putida KT2440 (hereafter KT2440) has been developed as a biocatalyst owing in part to its native catabolic capabilities but is not known to catabolize S-type lignin-derived compounds. Here, we demonstrate that syringate, a common S-type lignin-derived compound, is utilized by KT2440 only in the presence of another energy source or when vanAB was overexpressed, as syringate was found to be O-demethylated to gallate by VanAB, a two-component monooxygenase, and further catabolized via extradiol cleavage. Unexpectedly, the specificity (kcat/KM) of VanAB for syringate was within 25% that for vanillate and O-demethylation of both substrates was well-coupled to O2 consumption. However, the native KT2440 gallate-cleaving dioxygenase, GalA, was potently inactivated by 3-O-methylgallate. To engineer a biocatalyst to simultaneously convert S-, G-, and H-type monomers, we therefore employed VanAB from Pseudomonas sp. HR199, which has lower activity for 3MGA, and LigAB, an extradiol dioxygenase able to cleave protocatechuate and 3-O-methylgallate. This strain converted 93% of a mixture of lignin monomers to 2-pyrone-4,6-dicarboxylate, a promising bio-based chemical. Overall, this study elucidates a native pathway in KT2440 for catabolizing S-type lignin-derived compounds and demonstrates the potential of this robust chassis for lignin valorization.  相似文献   

15.
Decomposition of plant litter during the freeze-thaw season has recently gained attention as having a significant role in nutrient cycling in many cold ecosystems. However, few studies have examined decomposition of crop remnants during the freeze-thaw season in an agronomic setting when microbial activity is presumably low. We examined decomposition of four cultivars of sorghum (Sorghum bicolor) leaves in a field in Southern Minnesota, USA using the litterbag method. Three of the four cultivars we examined expressed the brown midrib (bmr) mutation which have altered/reduced levels of lignin in their secondary cell walls compared to the wild-type (WT). Litter was buried in the fall and harvested during the spring thaw. After 160 d the bmr mutants lost 57–62% of their initial mass, compared to 51% in the WT. Mass loss agreed with presumed initial litter quality, as the bmr litter had higher initial N, and holocellulose:lignin and lower lignin, C:N and lignin:N values compared to the WT. The increased decomposition of the bmr cultivars appears to be related to increased loss of hemicellulose and holocellulose (cellulose+hemicellulose) or higher initial N concentrations. Alterations in cell-wall deposition in the bmr cultivars may increase accessibility of microbial cell-wall degrading enzymes that accelerate mass loss. Our results demonstrate that alterations in initial lignin chemistry may influence decomposition of sorghum litter in an agronomic setting.  相似文献   

16.
Iodine-cyclohexa-amylose tetrahydrate [(C6H10O5)6 ·I2·d4H2O] crystallizes in the orthorhombic space-group P212121, a  14.240 Å, b  36.014 Å, c  9.558 Å. The structure was solved by heavy-atom techniques and refined by least-squares methods to a conventional discrepancy index R  0.148 for the 2872 observed data. The six d-glucose residues are in the C1 chair conformation; the conformational angles vary in magnitude from 45 to 66°, the angles O(5)-C(5)-C(6)-O(6) are close to · 70°, and the six O(4) atoms are almost coplanar (r.m. s. displacement 0.13 Å). Only four of the six O(2) ?O(3) intramolecular hydrogen bonds have formed, which renders the molecule less symmetrical and more conical-shaped than in the previously determined α-cyclodextrin-potassium acetate complex. The iodine molecule is coaxial with the cyclohexa-amylose molecule. The I-I distance is a conventional 2.677 Å. Close interactions between the iodine atoms and the host molecule comprise carbon atoms C(5) and C(6) and oxygen atoms O(4), with interatomic distances all equal to or greater than van der Waals contacts. Intermolecular, almost-linear, short contacts O ? I-I?O with I?O distances of 3.22 and 3.07 Å indicate attractive interaction.The molecules are arranged in herring-bone “cage-type” fashion, with the four water molecules as space-filling mediators; the structure is held together by an intricate network of hydrogen bonds.  相似文献   

17.
Aim: To enhance the information pertaining to the epidemiology of a collection of 378 Listeria spp. isolates obtained from several food‐processing plants in Ireland over a 3‐ year period (2004–2007). Methods and results: The collection was characterized by pulsed‐field gel electrophoresis (PFGE). The most prevalent pulse‐type was PFGE profile I (n = 14·5%) that consisted mainly of environmental Listeria spp. samples. Serotyping of 145 Listeria monocytogenes isolates was performed. The most common serovar was 1/2a and comprised 57·4% (n = 77) of the L. monocytogenes collection. The other serovars were as follows: 4b (14·1%, n = 19), 1/2b (9·7%, n = 13), 4c (4·4%, n = 6) and 1/2c (6·7%, n = 9), respectively. Eleven isolates were identified as non‐Listeria spp., the remaining ten L. monocytogenes isolates were nontypeable. The antimicrobial susceptibility testing revealed the antibiotic that isolates displayed the most resistance to was gentamicin (5%) followed by sulfamethoxazole‐trimethoprim (2%), tetracycline and ciprofloxacin (1·5%). Conclusions: The subtyping has indicated the diversity of the Listeria spp. The presence of serotype 1/2a, 1/2b and 4b in both raw and cooked ready‐to‐eat food products is a public health concern, as these serotypes are frequently associated with foodborne outbreaks and sporadic cases of human listeriosis. In addition, the emergence of antimicrobial‐resistant L. monocytogenes isolates could have serious therapeutic consequences. Significance and Impact of Study: The molecular subtyping and the further characterization of these isolates may be valuable particularly in the context of a suspected common source outbreak in the future.  相似文献   

18.
Nonpolar volatile extractives of Cupressus stephensonii heartwood amounting to 1·3% (drywood weight basis) were analyzed for their constituents and the main component was found to be carvacrol (78%). Tropolones (17%) were composed largely of β-thujaplicin and nootkatin with γ-thujaplicin in secondary quantities. Acids were low (1·7%). Neutral constituents (3·4%) contained α-pinene (8%), 4-terpinenol (27%), and methyl 4-trans-dehydrogeranate (45%).  相似文献   

19.

Background and Aims

The mobile carbon supply to different compartments of a tree is affected by climate, but its impact on cell-wall chemistry and mechanics remains unknown. To understand better the variability in root growth and biomechanics in mountain forests subjected to substrate mass movement, we investigated root chemical and mechanical properties of mature Abies georgei var. smithii (Smith fir) growing at different elevations on the Tibet–Qinghai Plateau.

Methods

Thin and fine roots (0·1–4·0 mm in diameter) were sampled at three different elevations (3480, 3900 and 4330 m, the last corresponding to the treeline). Tensile resistance of roots of different diameter classes was measured along with holocellulose and non-structural carbon (NSC) content.

Key Results

The mean force necessary to break roots in tension decreased significantly with increasing altitude and was attributed to a decrease in holocellulose content. Holocellulose was significantly lower in roots at the treeline (29·5 ± 1·3 %) compared with those at 3480 m (39·1 ± 1·0 %). Roots also differed significantly in NSC, with 35·6 ± 4·1 mg g−1 dry mass of mean total soluble sugars in roots at 3480 m and 18·8 ± 2·1 mg g−1 dry mass in roots at the treeline.

Conclusions

Root mechanical resistance, holocellulose and NSC content all decreased with increasing altitude. Holocellulose is made up principally of cellulose, the biosynthesis of which depends largely on NSC supply. Plants synthesize cellulose when conditions are optimal and NSC is not limiting. Thus, cellulose synthesis in the thin and fine roots measured in our study is probably not a priority in mature trees growing at very high altitudes, where climatic factors will be limiting for growth. Root NSC stocks at the treeline may be depleted through over-demand for carbon supply due to increased fine root production or winter root growth.  相似文献   

20.
Twelve white-rot fungi were grown in solid-state culture on lemon grass (Cymbopogon citratus) and citronella (Cymbopogon winterianus) bagasse. The two lignocellulosic substrates had 11% permanganate lignin and a holocellulose fraction of 58%. After 5 to 6 weeks at 20°C, nine fungi produced a solid residue from lemon grass with a higher in vitro dry matter enzyme digestibility than the original bagasse; seven did the same for citronella. The best fungus for both substrates was Bondarzewia berkeleyi; it increased the in vitro dry matter enzyme digestibility to 22 and 24% for lemon grass and citronella, respectively. The increases were correlated with weight loss and lignin loss. All fungi decreased lignin contents: 36% of the original value for lemon grass and 28% for citronella. Practically all fungi showed a preference for hemicellulose over cellulose.  相似文献   

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