Arbuscular mycorrhizal and dark septate endophyte fungal associations in South Indian grasses

We examined arbuscular mycorrhizal (AM) and dark septate endophyte (DSE) fungal association in 50 south Indian grasses from four different sites. AM fungal diversity was also compared among the different sites. Forty-four of the 50 grasses examined had AM association and dual association with DSE fungi occurred in 25 grasses. We report for the first time AM and DSE fungal status in 23 and 27 grasses respectively. Arum-type AM morphology was the dominant occurring in 21 grasses with typical Paris-type colonization occurring in 6 grasses. AM morphology is reported for the first time in 35 grasses. Over the different sites, spore density in the soil ranged from 5–22 per 100 g air-dried soil. Spores of 11 AM fungal taxa were isolated from the soil samples of grasses of which nine belonged to Glomus, one to Acaulospora and one to Scutellospora. No significant relationship existed between AM fungal colonization and spore numbers. Species richness was high in site II and Glomus aggregatum, Glomus viscosum and Glomus mosseae were most frequent species at different sites. Overall species diversity indices (Simpson index, Shannon-Weaver index, species equitability index) differed significantly between sites.     

Arbuscular mycorrhizal morphology and dark septate fungal associations in medicinal and aromatic plants of Western Ghats, Southern India

We investigated roots of 107 medicinal and aromatic plants (MAPs) in the Western Ghats region of Southern India for arbuscular mycorrhizal (AM) and dark septate endophyte (DSE) associations. Of the 107 MAPs belonging to 98 genera in 52 families examined, 79 were AM and 38 harbored a DSE association. Typical Arum- and Paris-type mycorrhizas are first reported in the presumed nonmycorrhizal family Amaranthaceae. Similarly, DSE associations are recorded for the first time in nine plant families and 37 plant species. Thirty MAPs had both AM and DSE associations. The number of MAPs having Arum-type mycorrhiza was greater than those having Paris-type. This was more prominent among herbaceous plants than in trees where the Paris-type was predominant. Similarly, the Arum-type was more prevalent in annuals than in perennials. DSE associations were more frequent in herbs and perennials compared to other MAPs.     

Arbuscular mycorrhizal associations in Lycopodiaceae

This study characterizes the molecular and phylogenetic identity of fungi involved in arbuscular mycorrhizal (AM) associations in extant Huperzia and Lycopodium (Lycopodiaceae). Huperzia and Lycopodium are characterized by a life cycle with long-lived autotrophic sporophytes and long-lived mycoheterotrophic (obtain all organic carbon from fungal symbionts) gametophytes. 18S ribosomal DNA was isolated and sequenced from Glomus symbionts in autotrophic sporophytes of seven species of Huperzia and Lycopodium and mycoheterotrophic Huperzia gametophytes collected from the Páramos of Ecuador. Phylogenetic analyses recovered four Glomus A phylotypes in a single clade (MH3) that form AM associations with Huperzia and Lycopodium. In addition, phylogenetic analyses of Glomus symbionts from other nonphotosynthetic plants demonstrate that most AM fungi that form mycoheterotrophic associations belong to at least four specific clades of Glomus A. These results suggest that most mycoheterotrophic plants that form AM associations do so with restricted clades of Glomus A. Moreover, the correspondence of identity of AM symbionts in Huperzia sporophytes and gametophytes raises the possibility that photosynthetic sporophytes are a source of carbon to conspecific mycoheterotrophic gametophytes via shared fungal networks.     

Arbuscular mycorrhizal associations and occurrence of dark septate endophytes in the roots of Brazilian weed plants

The ecology of weed plants includes their interactions with soil microorganisms, such as mutualistic partners that may contribute to their adaptation and competitive success in the agricultural fields. Despite the importance of microorganisms to plant growth, knowledge on weed-symbiont associations is still incipient compared to crops. Thus, a survey for the presence of arbuscular mycorrhiza (AM) and dark septate endophyte (DSE) associations in the roots of 50 weed species was done in three distinct areas during the dry and rainy seasons. We found that 41 and 29 out of the 50 species were associated with AM fungi and DSE, respectively, and 27 species presented both associations. All the plant species not forming AM belong to families thought to be nonmycorrhizal, such as Amaranthaceae, Commelinaceae, Brassicaceae, and Cyperaceae. The most common morphotype of AM observed was the Arum-type. No significant differences were found in root length colonization between the areas or seasons. For 19 species surveyed, this is the first report on their mycorrhizal status.     

Mycorrhizal and dark septate fungal associations in shola species of Western Ghats, southern India

We analyzed mycorrhizal types and dark septate endophyte (DSE) fungal associations in a shola vegetation of Western Ghats region, southern India. Plants belonging to 29 species of 19 families were assessed for mycorrhizal type and DSE fungal association. Five mycorrhizal classes were classified based on morphological traits: arbuscular, ecto-, ectendo-, ericoid-, and orchid mycorrhizas. Arbuscular mycorrhizal (AM) association was the most predominant mycorrhizal type, occurring in 16 plant species, followed by orchid (3 species), ericoid- (2 species), and ecto- and ectendomycorrhizas (1 species each). Mycorrhizal association is reported for the first time in 19 plant species. DSE fungal association was found in six plant species. Arum- and Paris-type AM morphology was found, respectively, in 10 and 5 plant species, with intermediate type recorded in one species. In this study, some new records on the morphological types of AM in some plant families were obtained. Further occurrence of ectendomycorrhizas in Pinus oocarpa and dark septate fungal association in Eleaocarpus munronii, Symplocos cochinchiensis, Daphniphyllum neilgherrense, Euodia roxburghiana, Syzygium arnottianum, and Syzygium montanum are reported for the first time. Roots of Berberis tinctoria, Mahonia leschenaultii (Berberidaceae), Elaeagnus latifolia (Elaeagnaceae), and Elaeocarpus oblongus (Elaeocarpaceae) lacked any fungal structures.     

Arbuscular mycorrhizal fungal propagules in a salt marsh

The tolerance of indigenous arbuscular mycorrhizal fungi (AMF) to stressful soil conditions and the relative contribution of spores of these fungi to plant colonization were examined in a Portuguese salt marsh. Glomus geosporum is dominant in this salt marsh. Using tetrazolium as a vital stain, a high proportion of field-collected spores were found to be metabolically active at all sampling dates. Spore germination tests showed that salt marsh spores were not affected by increasing levels of salinity, in contrast to two non-marsh spore isolates, and had a significantly higher ability to germinate under increased levels of salinity (20) than in the absence of or at low salinity (10). Germination of salt marsh spores was not affected by soil water levels above field capacity, in contrast to one of the two non-marsh spore isolates. For the evaluation of infectivity, a bioassay was established with undisturbed soil cores (containing all types of AM fungal propagules) and soil cores containing only spores as AM fungal propagules. Different types of propagules were able to initiate and to expand the root colonization of a native plant species, but spores were slower than mycelium and/or root fragments in colonizing host roots. The AM fungal adaptation shown by this study may explain the maintenance of AMF in salt marshes.     

Arbuscular mycorrhizal fungal diversity in phosphorus-deficient Alfisols of a dry North-western agro-ecosystem of Tamil Nadu,India

Semi-arid tropical soils, characterized by low soil organic carbon (SOC) with limited available macronutrients and micronutrients for crop plants, are predicated to have a yield sustainability problem in the future due to intensive cropping and limited nutrient management adoptions. Arbuscular mycorrhizal fungi (AMF), the functional link between plant and soil, play a pivotal role in nutrient cycling, organic matter stabilization and soil structure and fertility improvement. Hence, so far unexplored or underutilized, native AMF could be a potential resource for fertility management of these semi-arid tropical soils. Hence, in the present investigation, we assessed the abundance and diversity of AMF in phosphorus-deficient agricultural soils of semi-arid tropics of southern India. Our results show that the spore density and infective propagules of AMF were relatively low in these soils. The morpho-typing of extracted AMF spores revealed that these soils were dominated by glomeraceae (six species of Glomus) while species of Gigaspora, Scutellospora and Acaulospora were found in low abundance. The diversity indices assessed for the AMF species were also globally low. The non-metric multi-dimensional scaling and hierarchical cluster analysis of species richness showed variation in the community composition of AMF in the soils. The principal component analysis of the assessed soil variables suggest that the available phosphorus (P), SOC and dehydrogenase and alkaline phosphatase activities had negative impact on spore density and infective propagules of AMF with no effect on species diversity. The regression analyses reveal that the available P is the significant soil variable that drives the AMF abundance and infectivity. This study opens the possibilities of effective utilization of native mycorrhizae for agriculture in semi-arid tropical soils.     

湖南省石松类和蕨类植物分布新记录

在2004年出版的《湖南植物志》中收录有标本考证的湖南省石松类和蕨类植物683种41变种10变型[1],截至2014年底,又陆续发表了70余个新记录[2-9]。2013年出版的《Flora of China》结合现代分子系统学和最新的研究成果,对大量植物物种进行归并和科属的重新划分,作为湖南省优势科属资源的一些种类数量也相应减少,如水龙骨科( Polypodiaceae)的鳞果星蕨属( Lepidomicrosorium Ching et K. H. Shing )和盾蕨属( Neolepisorus Ching ),鳞毛蕨科( Dryopteridaceae)的复叶耳蕨属( Arachniodes Blume)以及以武陵山区为中心分布的黔蕨属( Phanerophlebiopsis Ching)(归并到复叶耳蕨属Arachniodes Blume)等,书中仅记录湖南省分布的石松类和蕨类植物约434种(含变种、亚种和杂种)[10],数量相对较少,而湖南省分布的一些较珍稀的蕨类植物未有罗列,如川黔肠蕨也Diplaziopsis cavaleriana ( Christ) C. Chr.页、中华双扇蕨( Dipteris chinensis Christ )、全缘燕尾蕨也Cheiropleuria integrifolia ( D. C. Eaton ex Hook.) M. Kato页、睫毛蕨也Pleurosoriopsis makinoi ( Maxim. ex Makino) Fomin页[1]和心叶薄唇蕨也Leptochilus cantoniensis ( Baker) Ching页等[11]。作者根据近十年的相关文献[1-9,12],对湖南省分布的石松类和蕨类植物进行了梳理,统计出631种27变种2亚种和2杂种。自2013年开始,作者对湖南省东南部的莽山、西部的小溪以及西北部的八大公山等多个国家级自然保护区进行了野外考察,发现了湖南省石松类和蕨类植物新记录6种,分属于5科6属,它们的生境及形态特征见图1。凭证标本保存于上海辰山植物标本馆( CSH )。其中一些种类分布的海拔较低,对于湖南省蕨类植物区系特点、科属结构以及物种多样性演化等研究具有潜在价值。     

Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages

We investigated whether arbuscular mycorrhizal fungal (AMF) communities in plant roots are random subsets of the local taxon pool or whether they reflect the action of certain community assembly rules. We studied AMF small subunit rRNA gene sequence groups in the roots of plant individuals belonging to 11 temperate forest understorey species. Empirical data were compared with null models assuming random association. Distinct fungal species pools were present in young and old successional forest. In both forest types, the richness of plant-AMF associations was lower than expected by chance, indicating a degree of partner selectivity. AMF communities were generally not characteristic of individual plant species, but those associated with ecological groups of plant species - habitat generalists and forest specialists - were nonrandom subsets of the available pool of fungal taxa and differed significantly from each other. Moreover, these AMF communities were the least distinctive in spring, but developed later in the season. Comparison with a global database showed that generalist plants tend to associate with generalist AMF. Thus, the habitat range of the host and a possible interaction with season played a role in the assembly of AMF communities in individual plant root systems.     

Arbuscular mycorrhizal fungal communities are phylogenetically clustered at small scales

Next-generation sequencing technologies with markers covering the full Glomeromycota phylum were used to uncover phylogenetic community structure of arbuscular mycorrhizal fungi (AMF) associated with Festuca brevipila. The study system was a semi-arid grassland with high plant diversity and a steep environmental gradient in pH, C, N, P and soil water content. The AMF community in roots and rhizosphere soil were analyzed separately and consisted of 74 distinct operational taxonomic units (OTUs) in total. Community-level variance partitioning showed that the role of environmental factors in determining AM species composition was marginal when controlling for spatial autocorrelation at multiple scales. Instead, phylogenetic distance and spatial distance were major correlates of AMF communities: OTUs that were more closely related (and which therefore may have similar traits) were more likely to co-occur. This pattern was insensitive to phylogenetic sampling breadth. Given the minor effects of the environment, we propose that at small scales closely related AMF positively associate through biotic factors such as plant-AMF filtering and interactions within the soil biota.     

Hydroxamate siderophore synthesis by Phialocephala fortinii, a typical dark septate fungal root endophyte

The siderophore production of various isolates of Phialocephala fortinii was assessed quantitatively as well as qualitatively in batch assays under pure culture conditions at different pH values and iron(III) concentrations. We found a distinct effect of both of these parameters on siderophore synthesis and as well as on fungal growth. In comparative analyses of two of the isolates, maximum siderophore production was found at a pH in the range of pH 4.0 to 4.5 while, under the experimental conditions employed, the optimal concentration of ferric iron was determined to be between 20–40 g iron (III) l^–1 (0.36–0.72 M, respectively). HPLC analysis of the culture filtrate of most of the isolates of P. fortinii revealed the excretion of ferricrocin as main hydroxamate siderophore, followed by ferrirubin and ferrichrome C. The pattern of release of these three substances proved to be dependent on pH and iron(III) concentration of the culture medium, and to be specific for each isolate under investigation.     

Vacuolar localization of phosphorus in hyphae of Phialocephala fortinii, a dark septate fungal root endophyte

Phialocephala fortinii is a dark septate fungal endophyte that colonizes roots of many host species. Its effect on plant growth varies from being pathogenic to beneficial. The basic biology of this species has received little research, and thus the main objectives of this study were to determine cytological features of hyphae, including the nature of the vacuolar system, and whether polyphosphate was present in vacuoles. Both living hyphae and hyphae that had been rapidly frozen and freeze substituted before embedding were studied. A complex system of vacuoles, including a motile tubular vacuolar system, elongated vacuoles, and spherical vacuoles, was demonstrated in living hyphae by the fluorescent probe Oregon Green 488 carboxylic acid diacetate, using laser scanning confocal microscopy. The motile tubular vacuolar system was more prevalent at the hyphal tip than in more distal regions, whereas elongated vacuoles and spherical vacuoles were more abundant distal to the tip. All vacuoles contained polyphosphate as shown by labelling embedded samples with recombinant polyphosphate binding domain of Escherichia coli exopolyphosphatase, containing Xpress tag at the N-terminal end, followed by anti-Xpress antibody and a secondary antibody conjugated either to a fluorescent probe for laser scanning confocal microscopy or colloidal gold for transmission electron microscopy. The polyphosphate was dispersed in vacuoles. This was confirmed by staining embedded samples with 4',6-diamidino-2-phenylindole and viewing with UV light using epifluorescence microscopy. These cytological methods showed that the tubular vacuolar system had lower concentrations of polyphosphate than the spherical vacuoles. Lipid bodies were present around vacuoles.     

A survey of the mycorrhization of Southeast Asian ferns and lycophytes

The colonisation of land by plants may not have been possible without mycorrhizae, which supply the majority of land plants with nutrients, water and other benefits. In this sense, the mycorrhization of basal groups of land plants such as ferns and lycophytes is of particular interest, yet only about 9% of fern and lycophyte species have been sampled for their mycorrhization status, and no community‐level analyses exist for tropical fern communities. In the present study, we screened 170 specimens of ferns and lycophytes from Malaysia and Sulawesi (Indonesia), representing 126 species, and report the mycorrhization status for 109 species and 19 genera for the first time. Mycorrhizal colonisations were detected in 96 (56.5%) of the specimens, 85 of which corresponded to arbuscular mycorrhizae (AMF), three to dark‐septate endophytes (DSE) and four to mixed colonisations (AMF + DSE). DSE colonisations were lower than in comparable samples of ferns from the Andes, suggesting a geographical or taxonomic pattern in this type of colonisation. Epiphytes had significantly lower levels of colonisation (26.1%) than terrestrial plants (70.7%), probably due to the difficulty of establishment of mycorrhizal fungi in the canopy habitat.     

Dark septate endophyte and arbuscular mycorrhizal status of vegetation colonizing a bottomland hardwood forest after a 100 year flood

Levels of arbuscular mycorrhizal (AM) colonization and dark septate endophyte (DSE) colonization were assessed in the vegetation recolonizing a remnant bottomland hardwood forest in north central Texas following a 100 year flood. Thirty seven plant species representing 21 dicotyledonous and 2 montocotyledonous families established following floodwater recession. AM and/or DSE were found in all species. AM colonization was found in 31 out of the 37 species assessed including both monocotyledonous families (Poaceae and Cyperaceae) and 17 out of 21 dicotyledonous families (Acanthaceae, Asteraceae, Boraginaceae, Cucurbitaceae, Euphorbiaceae, Lamiaceae, Loganiaceae, Lythraceae, Malvaceae, Onagraceae, Pedaliaceae, Ranunculaceae, Sapindaceae, Scrophulariaceae, Solanaceae, Verbanaceae and Violaceae). DSE were found in 31 out of 37 species assessed including both monocotyledonous families and 15 out of 21 dicotyledonous families (Amaranthaceae, Asteraceae, Boraginaceae, Brassicaceae, Cucurbitaceae, Euphorbiaceae, Lamiaceae, Lythraceae, Malvaceae, Pedaliaceae, Phytolaccaceae, Polygonaceae, Ranunculaceae, Sapindaceae, Scrophulariaceae and Violaceae). There were no detectable differences in AM or DSE colonization levels among wetland indicator groups (p > 0.05). Levels of DSE colonization were negatively correlated with vesicular colonization and hyphal colonization for the obligate wetland species. There were no other significant relationships between AM and DSE colonization detected. Spearman rank order correlation coefficients did not differ significantly among wetland indicatory category for any level of AM or DSE colonization.     

Arbuscular mycorrhizal fungal species suppress inducible plant responses and alter defensive strategies following herbivory

In a greenhouse experiment using Plantago lanceolata, plants grown with different arbuscular mycorrhizal (AM) fungal species differed in constitutive levels of chemical defense depending on the species of AM fungi with which they were associated. AM fungal inoculation also modified the induced chemical response following herbivory by the specialist lepidopoteran herbivore Junonia coenia, and fungal species varied in how they affected induced responses. On average, inoculation with AM fungi substantially reduced the induced chemical response as compared with sterile controls, and inoculation with a mixture of AM fungi suppressed the induced response of P. lanceolata to herbivory. These results suggest that AM fungi can exert controlling influence over plant defensive phenotypes, and a portion of the substantial variation among experimental tests of induced chemical responses may be attributable to AM fungi.